Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0690
(623 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 149 2e-36
SB_16935| Best HMM Match : Cadherin (HMM E-Value=0) 29 2.3
SB_11877| Best HMM Match : efhand (HMM E-Value=7.8e-07) 29 2.3
SB_37810| Best HMM Match : DUF548 (HMM E-Value=1.7) 29 4.1
SB_12491| Best HMM Match : rve (HMM E-Value=1.6e-18) 28 5.4
SB_58418| Best HMM Match : DUF1110 (HMM E-Value=3.7) 28 5.4
SB_34860| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 149 bits (360), Expect = 2e-36
Identities = 66/91 (72%), Positives = 76/91 (83%)
Frame = +2
Query: 257 PANXTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFT 436
P+N TTEVKSVEMHHE+L EA+PGDNVGFNVKNVSVK+++RG VAGD KNNPPK FT
Sbjct: 141 PSNITTEVKSVEMHHESLAEALPGDNVGFNVKNVSVKDIKRGNVAGDFKNNPPKPCKSFT 200
Query: 437 AQVIVLNHPGQISNGYTPVLDCHTPTLPANF 529
AQVIV+NHPG+I GY+PVLDCHT + F
Sbjct: 201 AQVIVMNHPGEIHAGYSPVLDCHTAHIACKF 231
Score = 117 bits (281), Expect = 9e-27
Identities = 55/84 (65%), Positives = 64/84 (76%), Gaps = 6/84 (7%)
Frame = +3
Query: 12 NMLEPSTKMPWFKGWQVER------KEGKADGKCLIEALDAILPPARPTDKPLRLPXQDV 173
NM+ +++MPWFK W +ER KE A G L E LD+ILPP+RP+ PLRLP QDV
Sbjct: 53 NMITGTSQMPWFKQWTIERVDPATKKEANASGVTLFEGLDSILPPSRPSGLPLRLPLQDV 112
Query: 174 YKIGGIGTVPVGRVETGVLKPGTI 245
YKIGGIGTVPVGRVETGVLKPGT+
Sbjct: 113 YKIGGIGTVPVGRVETGVLKPGTV 136
>SB_16935| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2204
Score = 29.5 bits (63), Expect = 2.3
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Frame = +2
Query: 314 EAVPGDNVGFNVKNVSVKEL--RRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYT 487
E N+ FN+++ ++ + ++ N P A + T + IV N P G
Sbjct: 955 EKAQNHNITFNIRDTPYSQISVNQTFIIAVINVNEPPSAINLTNKNIVENSPRGTVIGRL 1014
Query: 488 PVLDCHTPTLPANFAENPR 544
V D P LP +F N R
Sbjct: 1015 IVEDPDEPFLPQSFVCNLR 1033
>SB_11877| Best HMM Match : efhand (HMM E-Value=7.8e-07)
Length = 390
Score = 29.5 bits (63), Expect = 2.3
Identities = 22/62 (35%), Positives = 30/62 (48%)
Frame = +3
Query: 6 GDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPXQDVYKIG 185
G+N E K + W V+R +D + E LD ILP RP P+ D++K G
Sbjct: 12 GENCFENERKAA-VRSW-VQRLNHHSDARTERENLD-ILPSIRPATVPIGFRNGDIHK-G 67
Query: 186 GI 191
GI
Sbjct: 68 GI 69
>SB_37810| Best HMM Match : DUF548 (HMM E-Value=1.7)
Length = 282
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 248 CLXPANXTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAG 394
CL P+N ++SV ++ LQ++ +G N N K + +AG
Sbjct: 148 CLMPSNLVINMQSVVGYNNKLQKSTDSMTLGANAINTETKPVGAHNMAG 196
>SB_12491| Best HMM Match : rve (HMM E-Value=1.6e-18)
Length = 1106
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +2
Query: 248 CLXPANXTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAG 394
CL P+N +SV ++ LQ+A +G N N K + +AG
Sbjct: 170 CLMPSNLVINTQSVVGYNNKLQKATDFMKLGANAINTETKPVGAHNMAG 218
>SB_58418| Best HMM Match : DUF1110 (HMM E-Value=3.7)
Length = 474
Score = 28.3 bits (60), Expect = 5.4
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = -2
Query: 397 VTSNITTTQF-LDGHVLYVETYIVSRYSFLESFVVHLHRLDFSSXVGGGKTTMVPGFNTP 221
+ N++ T L+G +V+ V Y E VVH RL S+ GG T V +T
Sbjct: 42 LAGNLSRTHLRLEGLPTFVDDVYVFGYLRREDCVVHGGRLSCSTGEGGAAKTTVHRISTA 101
Query: 220 V 218
V
Sbjct: 102 V 102
>SB_34860| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 114
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +2
Query: 260 ANXTTEVKSVEMHHEALQ-EAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPP 415
A+ TT A+Q E PG ++G + + VKEL++ AG + PP
Sbjct: 49 ASATTSTTGSHQAMSAMQSEEEPGASMGHRTERLKVKELKQMKRAGLTPLRPP 101
>SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3367
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 587 GLTSVRLPSTTVNFFLDFLQNLQAMW 510
G+T++ LPS++ +DF NLQ W
Sbjct: 2463 GITTIPLPSSSSTPIIDFEVNLQGEW 2488
>SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 476
Score = 27.5 bits (58), Expect = 9.4
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = +3
Query: 3 HGDNMLEPSTKMPWFKGWQVERKE 74
H DN + PWF+ W +++E
Sbjct: 192 HNDNKTHSTQTGPWFRAWSNQKRE 215
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,215,154
Number of Sequences: 59808
Number of extensions: 505529
Number of successful extensions: 1583
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1579
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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