Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0690
(623 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 152 2e-37
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 152 2e-37
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 152 2e-37
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 152 2e-37
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 52 2e-07
At1g35550.1 68414.m04414 elongation factor Tu C-terminal domain-... 46 2e-05
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 46 2e-05
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 43 2e-04
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 39 0.002
At2g31060.1 68415.m03790 elongation factor family protein contai... 31 0.62
At2g46830.1 68415.m05843 myb-related transcription factor (CCA1)... 31 0.82
At1g47840.1 68414.m05325 hexokinase, putative similar to hexokin... 29 3.3
At2g42410.1 68415.m05249 zinc finger (C2H2 type) family protein ... 28 4.4
At5g60730.1 68418.m07620 anion-transporting ATPase family protei... 27 7.7
At5g07670.1 68418.m00878 F-box family protein similar to unknown... 27 7.7
At1g01060.2 68414.m00007 myb family transcription factor contain... 27 7.7
At1g01060.1 68414.m00006 myb family transcription factor contain... 27 7.7
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 152 bits (368), Expect = 2e-37
Identities = 66/93 (70%), Positives = 80/93 (86%)
Frame = +2
Query: 257 PANXTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFT 436
P TTEVKSVEMHHE+L EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P KGAA+FT
Sbjct: 270 PTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFT 329
Query: 437 AQVIVLNHPGQISNGYTPVLDCHTPTLPANFAE 535
+QVI++NHPGQI NGY PVLDCHT + F+E
Sbjct: 330 SQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSE 362
Score = 98.7 bits (235), Expect = 3e-21
Identities = 49/80 (61%), Positives = 57/80 (71%)
Frame = +3
Query: 6 GDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPXQDVYKIG 185
GDNM+E ST + W+KG L+EALD I P RP+DKPLRLP QDVYKIG
Sbjct: 198 GDNMIERSTNLDWYKG------------PTLLEALDQINEPKRPSDKPLRLPLQDVYKIG 245
Query: 186 GIGTVPVGRVETGVLKPGTI 245
GIGTVPVGRVETG++KPG +
Sbjct: 246 GIGTVPVGRVETGMIKPGMV 265
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 152 bits (368), Expect = 2e-37
Identities = 66/93 (70%), Positives = 80/93 (86%)
Frame = +2
Query: 257 PANXTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFT 436
P TTEVKSVEMHHE+L EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P KGAA+FT
Sbjct: 270 PTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFT 329
Query: 437 AQVIVLNHPGQISNGYTPVLDCHTPTLPANFAE 535
+QVI++NHPGQI NGY PVLDCHT + F+E
Sbjct: 330 SQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSE 362
Score = 98.7 bits (235), Expect = 3e-21
Identities = 49/80 (61%), Positives = 57/80 (71%)
Frame = +3
Query: 6 GDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPXQDVYKIG 185
GDNM+E ST + W+KG L+EALD I P RP+DKPLRLP QDVYKIG
Sbjct: 198 GDNMIERSTNLDWYKG------------PTLLEALDQINEPKRPSDKPLRLPLQDVYKIG 245
Query: 186 GIGTVPVGRVETGVLKPGTI 245
GIGTVPVGRVETG++KPG +
Sbjct: 246 GIGTVPVGRVETGMIKPGMV 265
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 152 bits (368), Expect = 2e-37
Identities = 66/93 (70%), Positives = 80/93 (86%)
Frame = +2
Query: 257 PANXTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFT 436
P TTEVKSVEMHHE+L EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P KGAA+FT
Sbjct: 270 PTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFT 329
Query: 437 AQVIVLNHPGQISNGYTPVLDCHTPTLPANFAE 535
+QVI++NHPGQI NGY PVLDCHT + F+E
Sbjct: 330 SQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSE 362
Score = 98.7 bits (235), Expect = 3e-21
Identities = 49/80 (61%), Positives = 57/80 (71%)
Frame = +3
Query: 6 GDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPXQDVYKIG 185
GDNM+E ST + W+KG L+EALD I P RP+DKPLRLP QDVYKIG
Sbjct: 198 GDNMIERSTNLDWYKG------------PTLLEALDQINEPKRPSDKPLRLPLQDVYKIG 245
Query: 186 GIGTVPVGRVETGVLKPGTI 245
GIGTVPVGRVETG++KPG +
Sbjct: 246 GIGTVPVGRVETGMIKPGMV 265
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 152 bits (368), Expect = 2e-37
Identities = 66/93 (70%), Positives = 80/93 (86%)
Frame = +2
Query: 257 PANXTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFT 436
P TTEVKSVEMHHE+L EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P KGAA+FT
Sbjct: 270 PTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFT 329
Query: 437 AQVIVLNHPGQISNGYTPVLDCHTPTLPANFAE 535
+QVI++NHPGQI NGY PVLDCHT + F+E
Sbjct: 330 SQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSE 362
Score = 98.7 bits (235), Expect = 3e-21
Identities = 49/80 (61%), Positives = 57/80 (71%)
Frame = +3
Query: 6 GDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPXQDVYKIG 185
GDNM+E ST + W+KG L+EALD I P RP+DKPLRLP QDVYKIG
Sbjct: 198 GDNMIERSTNLDWYKG------------PTLLEALDQINEPKRPSDKPLRLPLQDVYKIG 245
Query: 186 GIGTVPVGRVETGVLKPGTI 245
GIGTVPVGRVETG++KPG +
Sbjct: 246 GIGTVPVGRVETGMIKPGMV 265
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 52.4 bits (120), Expect = 2e-07
Identities = 24/49 (48%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Frame = +3
Query: 96 LIEALDAILP-PARPTDKPLRLPXQDVYKIGGIGTVPVGRVETGVLKPG 239
L++A+D +P P R DKP +P +DV+ I G GTV GR+E GV+K G
Sbjct: 249 LMDAVDEYIPDPVRVLDKPFLMPIEDVFSIQGRGTVATGRIEQGVIKVG 297
Score = 31.5 bits (68), Expect = 0.47
Identities = 19/59 (32%), Positives = 30/59 (50%)
Frame = +2
Query: 278 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVL 454
V VEM + L GDNVG ++ + ++++RG V +K K F A++ VL
Sbjct: 316 VTGVEMFKKILDNGQAGDNVGLLLRGLKREDIQRGMVI--AKPGSCKTYKKFEAEIYVL 372
>At1g35550.1 68414.m04414 elongation factor Tu C-terminal
domain-containing protein similar to SP|P13905
Elongation factor 1-alpha (EF-1-alpha) {Arabidopsis
thaliana}; contains Pfam profile PF03143: Elongation
factor Tu C-terminal domain
Length = 104
Score = 46.4 bits (105), Expect = 2e-05
Identities = 18/28 (64%), Positives = 21/28 (75%)
Frame = +2
Query: 452 LNHPGQISNGYTPVLDCHTPTLPANFAE 535
+NH GQI NGYTPVLDCHT + F+E
Sbjct: 1 MNHLGQIKNGYTPVLDCHTSHIAVKFSE 28
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 46.0 bits (104), Expect = 2e-05
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Frame = +3
Query: 96 LIEALDAILP-PARPTDKPLRLPXQDVYKIGGIGTVPVGRVETGVLKPG 239
L++A+D +P P R T+ P L +DV+ I G GTV GRVE G +K G
Sbjct: 269 LMDAVDDYIPIPQRQTELPFLLAVEDVFSITGRGTVATGRVERGTVKVG 317
Score = 34.7 bits (76), Expect = 0.050
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +2
Query: 278 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 388
V VEM + L EA+ GDNVG ++ + +++RG V
Sbjct: 333 VTGVEMFQKILDEALAGDNVGLLLRGIQKADIQRGMV 369
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +3
Query: 87 GKCLIEALDAILPPARPTDKPLRLPXQDVYKIGGIGTVPV-GRVETGVLKPGT 242
G CL++A+D++ P R KPL +P D + G V G++E G ++PG+
Sbjct: 447 GPCLLDAVDSVKSPDRDVSKPLLMPICDAVRSTSQGQVSACGKLEAGAVRPGS 499
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 39.1 bits (87), Expect = 0.002
Identities = 20/51 (39%), Positives = 30/51 (58%)
Frame = +3
Query: 87 GKCLIEALDAILPPARPTDKPLRLPXQDVYKIGGIGTVPVGRVETGVLKPG 239
G E LD+I P R + P R+P D +K +GTV +G+VE+G ++ G
Sbjct: 310 GPSFFEVLDSIEIPPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSIREG 358
Score = 31.5 bits (68), Expect = 0.47
Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +2
Query: 257 PANXTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFT 436
P +V ++ + ++ A PG+N+ + + +++ G+V S NP +F
Sbjct: 365 PNKEQVKVVAIYCDEDKVKRAGPGENLRVRITGIEDEDILSGFVL-SSIVNPVPAVTEFV 423
Query: 437 AQVIVLN--HPGQISNGYTPVLDCH 505
AQ+ +L + GY +L H
Sbjct: 424 AQLQILELLDNAIFTAGYKAILHIH 448
>At2g31060.1 68415.m03790 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain, PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 527
Score = 31.1 bits (67), Expect = 0.62
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Frame = +3
Query: 48 KGW--QVERKEGKADGKCLIEALDAIL----PPARPTDKPLRLPXQDVYKIGGIGTVPVG 209
+GW K+ D K + + LDA++ PP D+P + + K +G + G
Sbjct: 82 EGWASSTYTKDPPVDAKNMADLLDAVVRHVQPPKANLDEPFLMLVSMMEKDFYLGRILTG 141
Query: 210 RVETGVLKPG 239
RV +GV++ G
Sbjct: 142 RVTSGVVRVG 151
>At2g46830.1 68415.m05843 myb-related transcription factor (CCA1)
identical to myb-related transcription factor (CCA1)
GI:4090569 from [Arabidopsis thaliana]
Length = 608
Score = 30.7 bits (66), Expect = 0.82
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 69 KEGKADGKCLIEALDAILPPARPTDKP 149
KE +A G + +ALD +PP RP KP
Sbjct: 74 KEAEAKGVAMGQALDIAIPPPRPKRKP 100
>At1g47840.1 68414.m05325 hexokinase, putative similar to hexokinase
1 [Arabidopsis thaliana] Swiss-Prot:Q42525
Length = 493
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 18 LEPSTKMPWFKGWQVERKEGKADGKCLIEALDA 116
++ T W KG++V EGK CL EA++A
Sbjct: 189 IDSGTLSKWTKGFKVSGMEGKNVVACLNEAMEA 221
>At2g42410.1 68415.m05249 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 214
Score = 28.3 bits (60), Expect = 4.4
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Frame = -2
Query: 202 GTVPIPPILYTSXWGRRRGLSVGRAGGRM----ASRASMRHFPSAL 77
G +P PP YT + RR S GG M RA +R PS L
Sbjct: 40 GLIPWPPKNYTCSFCRREFRSAQALGGHMNVHRRDRAKLRQIPSWL 85
>At5g60730.1 68418.m07620 anion-transporting ATPase family protein
low similarity to SP|O43681 Arsenical pump-driving
ATPase (EC 3.6.3.16) (Arsenite-translocating ATPase)
(Arsenical resistance ATPase) (Arsenite-transporting
ATPase) (ARSA) (ASNA-I) {Homo sapiens}; contains Pfam
profile PF02374: Anion-transporting ATPase
Length = 391
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +1
Query: 478 RLHTSLGLPHSHIACKFCRKSKKKLTVVLG 567
RL + LP S CKFC +K+ T VLG
Sbjct: 324 RLIVNQLLPQSESDCKFCSIRRKEQTRVLG 353
>At5g07670.1 68418.m00878 F-box family protein similar to unknown
protein (pir||C71419) ; similar to SKP1 interacting
partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 476
Score = 27.5 bits (58), Expect = 7.7
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Frame = -2
Query: 433 KICSTLRWVVF----GVTSNITTTQFLDGHV--LYVETYIVSRYSFLESFVVHLHRLD 278
K+C R +VF G+ ++I + G V LY+E + S LES ++H H L+
Sbjct: 360 KMCEAAREIVFQDCWGLDNDIFSLAMAFGRVKLLYLEGCSLLTTSGLESVILHWHELE 417
>At1g01060.2 68414.m00007 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain;
identical to cDNA LATE ELONGATED HYPOCOTYL MYB
transcription factor GI:3281845
Length = 645
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 69 KEGKADGKCLIEALDAILPPARPTDKP 149
KE + G + +ALD +PP RP KP
Sbjct: 74 KEAEVKGIPVCQALDIEIPPPRPKRKP 100
>At1g01060.1 68414.m00006 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain;
identical to cDNA LATE ELONGATED HYPOCOTYL MYB
transcription factor GI:3281845
Length = 645
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 69 KEGKADGKCLIEALDAILPPARPTDKP 149
KE + G + +ALD +PP RP KP
Sbjct: 74 KEAEVKGIPVCQALDIEIPPPRPKRKP 100
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,436,797
Number of Sequences: 28952
Number of extensions: 345601
Number of successful extensions: 1106
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -