Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0687
(623 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.) 73 2e-15
SB_41548| Best HMM Match : ResIII (HMM E-Value=0.27) 61 8e-10
SB_5453| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 1e-09
SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35) 41 0.001
SB_47951| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_3314| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.035
SB_48632| Best HMM Match : DUF265 (HMM E-Value=7.6e-22) 33 0.25
SB_19368| Best HMM Match : DEAD (HMM E-Value=4) 33 0.25
SB_45627| Best HMM Match : AAA (HMM E-Value=0) 32 0.43
SB_40956| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.43
SB_7424| Best HMM Match : AAA (HMM E-Value=0) 31 0.76
SB_3919| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_50533| Best HMM Match : SH3_2 (HMM E-Value=2.3e-05) 29 2.3
SB_16982| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_55690| Best HMM Match : AAA (HMM E-Value=0) 29 2.3
SB_3385| Best HMM Match : 3_5_exonuc (HMM E-Value=0.0015) 29 3.1
SB_47345| Best HMM Match : Neural_ProG_Cyt (HMM E-Value=8.3) 29 3.1
SB_41077| Best HMM Match : LRR_1 (HMM E-Value=1.8e-05) 29 4.1
SB_6010| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5) 29 4.1
SB_3115| Best HMM Match : AAA (HMM E-Value=0) 29 4.1
SB_5070| Best HMM Match : TPR_2 (HMM E-Value=1.4e-13) 28 5.4
SB_31682| Best HMM Match : SAP (HMM E-Value=0.031) 28 7.1
SB_15631| Best HMM Match : SAP (HMM E-Value=0.031) 28 7.1
SB_5674| Best HMM Match : FlaC_arch (HMM E-Value=0.97) 28 7.1
SB_39230| Best HMM Match : SNF2_N (HMM E-Value=1.40004e-41) 27 9.4
SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23) 27 9.4
SB_4423| Best HMM Match : 7tm_1 (HMM E-Value=5.5e-08) 27 9.4
>SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2077
Score = 72.9 bits (171), Expect(2) = 2e-15
Identities = 33/56 (58%), Positives = 44/56 (78%), Gaps = 1/56 (1%)
Frame = +1
Query: 292 VLRPDLWPD-ESIGLDESQLNAYKFALTKEFAVIQGPPGTGKTFLGVKIASTLLRN 456
+L + WP+ ++ LD+SQL A + ALTKEFAVIQGPPGTGKT++G+K+A LL N
Sbjct: 843 ILDTNSWPNAHALNLDKSQLRAVQTALTKEFAVIQGPPGTGKTYIGLKVAKVLLHN 898
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Frame = +2
Query: 23 QITEINIAVAFQNPVSNKI--FSEAYLMVESEVFFEPYHRVLKVLQNSRPDELPMKKYIV 196
++ E I ++F N ++ I + Y MVE+ +FE Y VL+ L+ P +P ++YIV
Sbjct: 706 ELEEGLIDISFHNHAAHGINLTDDLYEMVETTAYFESYRHVLEGLKEIDPQSMPFQRYIV 765
Query: 197 DVDNETQPPRYLNS 238
++E P YL +
Sbjct: 766 RCESEVDAPAYLRN 779
Score = 27.1 bits (57), Expect(2) = 2e-15
Identities = 8/12 (66%), Positives = 12/12 (100%)
Frame = +1
Query: 475 PMLIICYTNHAL 510
P+L++C+TNHAL
Sbjct: 934 PILVVCFTNHAL 945
>SB_41548| Best HMM Match : ResIII (HMM E-Value=0.27)
Length = 514
Score = 60.9 bits (141), Expect = 8e-10
Identities = 30/60 (50%), Positives = 37/60 (61%)
Frame = +1
Query: 331 LDESQLNAYKFALTKEFAVIQGPPGTGKTFLGVKIASTLLRNLSLEGTPMLIICYTNHAL 510
L+ SQ A AL+ A++QGPPG GKTFLGVKI LL P+L++ Y NHAL
Sbjct: 376 LESSQSEALVHALSNRLAIVQGPPGCGKTFLGVKIVQLLLSLQPQLTGPVLLLTYKNHAL 435
Score = 37.5 bits (83), Expect = 0.009
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +2
Query: 95 LMVESEVFFEPYHRVLKVLQNSRPDELPMKKYIVDVDNETQPPRYLNS 238
+MVES +F VL LQ ++ P+K IV ++ T P YL+S
Sbjct: 293 VMVESPTYFHALRPVLNSLQKFEMEDFPLKNEIVHANSSTNLPAYLDS 340
>SB_5453| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2578
Score = 60.5 bits (140), Expect = 1e-09
Identities = 30/60 (50%), Positives = 36/60 (60%)
Frame = +1
Query: 331 LDESQLNAYKFALTKEFAVIQGPPGTGKTFLGVKIASTLLRNLSLEGTPMLIICYTNHAL 510
L+ SQ A AL A++QGPPG GKTFLGVKI LL P+L++ Y NHAL
Sbjct: 517 LESSQSEALLHALNNRLAIVQGPPGCGKTFLGVKIVQLLLSLQPQLTGPVLLLTYKNHAL 576
Score = 36.7 bits (81), Expect = 0.015
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +2
Query: 95 LMVESEVFFEPYHRVLKVLQNSRPDELPMKKYIVDVDNETQPPRYLNS 238
+MVES +F VL LQ ++ P+K IV + ++ P YLNS
Sbjct: 436 VMVESPTYFHALRPVLNSLQKFEMEDFPLKNEIVHAVSSSELPLYLNS 483
>SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)
Length = 2748
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/55 (32%), Positives = 30/55 (54%)
Frame = +1
Query: 328 GLDESQLNAYKFALTKEFAVIQGPPGTGKTFLGVKIASTLLRNLSLEGTPMLIIC 492
GLD+ Q +A + ALT ++ G PGTGK++ V IA + + +++C
Sbjct: 2150 GLDDDQAHAVRTALTHPLTMVYGQPGTGKSWTAVAIACHFVNQNRADAAGHVLLC 2204
>SB_47951| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 437
Score = 37.9 bits (84), Expect = 0.007
Identities = 22/36 (61%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = +1
Query: 331 LDESQLNAYKFALTK-EFAVIQGPPGTGKTFLGVKI 435
LD SQ A FAL + E AVI GPPGTGKT V+I
Sbjct: 235 LDLSQREAVGFALRQPEVAVIHGPPGTGKTTTVVEI 270
>SB_3314| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 663
Score = 35.5 bits (78), Expect = 0.035
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = +1
Query: 388 IQGPPGTGKTFLGVKIASTLLRNLSLEGTPMLIICYTNHAL 510
+ GPPGTGKT + V+I S + N + T L++ ++N AL
Sbjct: 590 VVGPPGTGKTDVAVQIISNIYHNFPEQRT--LLVTHSNQAL 628
>SB_48632| Best HMM Match : DUF265 (HMM E-Value=7.6e-22)
Length = 455
Score = 32.7 bits (71), Expect = 0.25
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +1
Query: 322 SIGLDESQLNAYKFALTKEFAVIQGPPGTGKTFLGVKIASTL 447
++ +++Q+ ++ A K+ ++ GPPG GKT L K+ L
Sbjct: 34 NLATNKTQVTQFEMAAYKKHVLLTGPPGIGKTTLCSKVKQAL 75
>SB_19368| Best HMM Match : DEAD (HMM E-Value=4)
Length = 217
Score = 32.7 bits (71), Expect = 0.25
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +1
Query: 331 LDESQLNAYKFALTKE-FAVIQGPPGTGKTFLGVKIASTLLRNLSLEGTPMLIICYTNHA 507
L+ Q A ALT E +A+I G PGTGKT + L++ L G +L+ YT+ A
Sbjct: 109 LNAGQKRAVCKALTAEDYALILGMPGTGKT----TTIACLVKVLIASGKSVLLTSYTHTA 164
Query: 508 LIN 516
+ N
Sbjct: 165 VDN 167
>SB_45627| Best HMM Match : AAA (HMM E-Value=0)
Length = 628
Score = 31.9 bits (69), Expect = 0.43
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +1
Query: 358 KFALTKEFAVI-QGPPGTGKTFLGVKIASTLLRN-LSLEGTPMLIICY 495
KF +T V+ GPPG GKT L IA+ N +S++G +L + +
Sbjct: 338 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWF 385
>SB_40956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1086
Score = 31.9 bits (69), Expect = 0.43
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +1
Query: 367 LTKEFAVIQGPPGTGKTFLGVKIASTLLRN-LSLEGTPMLIICYTNHA 507
L + ++ GPPGTGKT + +A+ N LS++G P LI Y +
Sbjct: 842 LRRSGVLLYGPPGTGKTLMAKAVATECSLNFLSVKG-PELINMYVGQS 888
>SB_7424| Best HMM Match : AAA (HMM E-Value=0)
Length = 294
Score = 31.1 bits (67), Expect = 0.76
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 382 AVIQGPPGTGKTFLGVKIASTL-LRNLSLEGTPML 483
A++ GPPGTGKT L +A + LS+ G+ L
Sbjct: 84 AILSGPPGTGKTLLAKAVAGEAGVPFLSISGSEFL 118
>SB_3919| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +1
Query: 274 EEIQFPVLRPDLWPDESIGLDESQLNAYKFALTKEFAVIQGPPGTGKTFLGVKIA 438
E I+ PV P+L+ E++G+D+ + ++ GPPGTGKT L +A
Sbjct: 191 EVIELPVKHPELF--EALGIDQPK-----------GVLLYGPPGTGKTLLARAVA 232
>SB_50533| Best HMM Match : SH3_2 (HMM E-Value=2.3e-05)
Length = 156
Score = 29.5 bits (63), Expect = 2.3
Identities = 9/24 (37%), Positives = 19/24 (79%)
Frame = -1
Query: 587 QTXTLTWAS*SDYTLGHREQSLQE 516
+T TW S +++TLGHR++++++
Sbjct: 104 ETQLYTWGSNTNFTLGHRDENMRQ 127
>SB_16982| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1031
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +2
Query: 59 NPVSNKIFSEAYLMVESEVFFEPYHRVLKVLQNSRPDELPMK 184
N I + Y MVE+ +FE VL+ LQ P +P +
Sbjct: 670 NQAVGDISANVYTMVETVAYFESCRHVLQGLQEIDPQSMPFQ 711
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 185 KYIVDVDNETQPPRYLNS 238
KYIV +NE +PP YL S
Sbjct: 782 KYIVYCENEIEPPAYLRS 799
>SB_55690| Best HMM Match : AAA (HMM E-Value=0)
Length = 1031
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +1
Query: 385 VIQGPPGTGKTFL-GVKIASTLLRNLSLEGTPML 483
++ GPPGTGKT L GV L +S++G +L
Sbjct: 705 LLYGPPGTGKTLLAGVVAKECGLNFISIKGPELL 738
>SB_3385| Best HMM Match : 3_5_exonuc (HMM E-Value=0.0015)
Length = 437
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +3
Query: 330 PRRISVKCIQIRFDQRVRRHPRSSWYRKNVFRGQNCFNATQKFIPRR 470
PR + C + +RH +S+W + ++ GQ + AT ++ R
Sbjct: 272 PRSLQAMCAIFLGEHLSKRHQQSNWKKSDLSPGQVAYAATDAWVSLR 318
>SB_47345| Best HMM Match : Neural_ProG_Cyt (HMM E-Value=8.3)
Length = 151
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +1
Query: 439 STLLRNLSLEGTPMLIICYTNHAL 510
+T LR ++ P+L++CYTNHAL
Sbjct: 6 TTNLRQINRH-RPILVVCYTNHAL 28
>SB_41077| Best HMM Match : LRR_1 (HMM E-Value=1.8e-05)
Length = 1200
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +1
Query: 325 IGLDESQLNAYKFALTKEFAVIQGPPGTGKTFLGVKIASTLLRNLSLEGTPMLIICY 495
+GLD+ + K A K +++G G GKTFL K+ +L+ E +P I +
Sbjct: 352 MGLDDFLNDILKVAAGKHL-LLKGKAGVGKTFLTHKLKESLVVGTPEELSPFRFIIH 407
>SB_6010| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2202
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +1
Query: 331 LDESQLNAYKFALTKEFAVIQGPP 402
L++ Q +A K ALT+ F +IQGPP
Sbjct: 1990 LNKYQEDAIKEALTQPFTLIQGPP 2013
>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
Length = 612
Score = 28.7 bits (61), Expect = 4.1
Identities = 9/12 (75%), Positives = 12/12 (100%)
Frame = +1
Query: 475 PMLIICYTNHAL 510
P+L++CYTNHAL
Sbjct: 138 PILVVCYTNHAL 149
>SB_3115| Best HMM Match : AAA (HMM E-Value=0)
Length = 913
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 382 AVIQGPPGTGKTFLGVKIAS 441
A++ GPPGTGKT L +A+
Sbjct: 161 ALLVGPPGTGKTLLAKAVAT 180
>SB_5070| Best HMM Match : TPR_2 (HMM E-Value=1.4e-13)
Length = 732
Score = 28.3 bits (60), Expect = 5.4
Identities = 9/40 (22%), Positives = 22/40 (55%)
Frame = +1
Query: 373 KEFAVIQGPPGTGKTFLGVKIASTLLRNLSLEGTPMLIIC 492
K +++ PG GK+ + +++A +L+ G ++ +C
Sbjct: 31 KRLLILKALPGAGKSAVAIQLAHYILKTQQYHGYQVVFVC 70
>SB_31682| Best HMM Match : SAP (HMM E-Value=0.031)
Length = 158
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -2
Query: 415 FFRYQEDLG*RRTLWSKRICMHLTEIRLGLLIHLAIG 305
F+ Q+D G T WS C L I GL IH +G
Sbjct: 6 FYDVQDDSGKTTTKWSSLDCDDLETIIRGLDIHAFLG 42
>SB_15631| Best HMM Match : SAP (HMM E-Value=0.031)
Length = 158
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -2
Query: 415 FFRYQEDLG*RRTLWSKRICMHLTEIRLGLLIHLAIG 305
F+ Q+D G T WS C L I GL IH +G
Sbjct: 6 FYDVQDDSGKTTTKWSSLDCDDLETIIRGLDIHAFLG 42
>SB_5674| Best HMM Match : FlaC_arch (HMM E-Value=0.97)
Length = 273
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -2
Query: 415 FFRYQEDLG*RRTLWSKRICMHLTEIRLGLLIHLAIG 305
F+ Q+D G T WS C L I GL IH +G
Sbjct: 154 FYDVQDDSGKTTTKWSSLDCDDLETIIRGLDIHAFLG 190
>SB_39230| Best HMM Match : SNF2_N (HMM E-Value=1.40004e-41)
Length = 1682
Score = 27.5 bits (58), Expect = 9.4
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +1
Query: 346 LNAYKFALTKEFAVIQGPPGTGKTFLGVKIASTLLRNLSLEGTPMLIICYTNHALINSWR 525
+ AYK ++ G GKT V + TL N LE T L++ N L+N W+
Sbjct: 810 VKAYKKGEPGSGCILAHCMGLGKTLQVVTLVHTLFNNKELEFTTALVVAPLN-TLLN-WQ 867
>SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23)
Length = 4240
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/77 (22%), Positives = 34/77 (44%)
Frame = +3
Query: 330 PRRISVKCIQIRFDQRVRRHPRSSWYRKNVFRGQNCFNATQKFIPRRHTDVDYLLYKSRP 509
P R +R+D + R PR+ R+N+ NCF H + L+ +
Sbjct: 1209 PERRKESISNVRYDSKTRETPRNFTSRENM----NCFGENVFENGVDHVEAVSLMEEPDS 1264
Query: 510 DQFLEGLLSVTQSIVRL 560
+ L+ + S+ +S+ ++
Sbjct: 1265 PEALQAMASLKESVTQV 1281
>SB_4423| Best HMM Match : 7tm_1 (HMM E-Value=5.5e-08)
Length = 1167
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -3
Query: 210 SLSTSTMYFFMGSSSGLEFCKTLSTLW*GSKNTSLSTIKY 91
SL ++ M F MG+ + +FC TLS L SLS +Y
Sbjct: 613 SLRSNAMMFLMGNMAFGDFCFTLSLLLMTIAQVSLSFQEY 652
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,144,889
Number of Sequences: 59808
Number of extensions: 431356
Number of successful extensions: 1082
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -