Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0687
(623 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g47010.1 68418.m05794 RNA helicase, putative similar to type ... 44 8e-05
At1g08840.1 68414.m00984 DNA replication helicase, putative simi... 44 8e-05
At2g38770.1 68415.m04760 expressed protein 38 0.004
At4g15570.1 68417.m02379 tRNA-splicing endonuclease positive eff... 35 0.050
At1g16800.1 68414.m02018 tRNA-splicing endonuclease positive eff... 34 0.067
At2g03270.1 68415.m00280 DNA-binding protein, putative similar t... 34 0.088
At5g35970.1 68418.m04332 DNA-binding protein, putative similar t... 33 0.20
At5g66910.1 68418.m08434 disease resistance protein (CC-NBS-LRR ... 31 0.47
At1g03000.1 68414.m00271 AAA-type ATPase family protein contains... 31 0.47
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 30 1.1
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 30 1.4
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 30 1.4
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 30 1.4
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 30 1.4
At5g25370.1 68418.m03009 phospholipase D, putative (PLDZETA) ide... 29 1.9
At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1) id... 29 1.9
At4g24710.1 68417.m03536 AAA-type ATPase family protein similar ... 29 1.9
At4g30100.1 68417.m04280 tRNA-splicing endonuclease positive eff... 29 2.5
At2g19120.1 68415.m02232 tRNA-splicing endonuclease positive eff... 29 2.5
At5g53540.1 68418.m06653 MSP1 protein, putative / intramitochond... 29 3.3
At4g27680.1 68417.m03980 MSP1 protein, putative / intramitochond... 29 3.3
At1g73960.1 68414.m08565 expressed protein similar to TATA bindi... 29 3.3
At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial a... 28 4.4
At3g27120.1 68416.m03393 spastin ATPase, putative similar to SWI... 28 4.4
At3g21090.1 68416.m02666 ABC transporter family protein similar ... 28 4.4
At2g22740.2 68415.m02696 SET domain-containing protein (SUVH6) i... 28 4.4
At2g22740.1 68415.m02695 SET domain-containing protein (SUVH6) i... 28 4.4
At5g64580.1 68418.m08116 AAA-type ATPase family protein similar ... 28 5.8
At5g45150.1 68418.m05543 ribonuclease III family protein similar... 28 5.8
At5g37160.1 68418.m04461 tRNA-splicing endonuclease positive eff... 28 5.8
At5g22330.1 68418.m02605 TATA box-binding protein-interacting pr... 28 5.8
At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta... 28 5.8
At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a) 28 5.8
At4g29520.1 68417.m04211 expressed protein 28 5.8
At3g05780.1 68416.m00649 Lon protease, putative similar to Lon p... 28 5.8
At1g17840.1 68414.m02208 ABC transporter family protein similar ... 28 5.8
At1g07510.1 68414.m00804 FtsH protease, putative similar to AAA-... 28 5.8
At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3... 27 7.7
At5g17730.1 68418.m02079 AAA-type ATPase family protein contains... 27 7.7
At5g15250.1 68418.m01786 FtsH protease, putative similar to FtsH... 27 7.7
At3g19740.1 68416.m02499 AAA-type ATPase family protein contains... 27 7.7
At2g37280.1 68415.m04573 ABC transporter family protein similar ... 27 7.7
At1g51500.1 68414.m05796 ABC transporter family protein similar ... 27 7.7
At1g50140.1 68414.m05623 AAA-type ATPase family protein contains... 27 7.7
>At5g47010.1 68418.m05794 RNA helicase, putative similar to type 1
RNA helicase pNORF1 [Homo sapiens] GI:1885356
Length = 1254
Score = 44.0 bits (99), Expect = 8e-05
Identities = 20/62 (32%), Positives = 39/62 (62%)
Frame = +1
Query: 331 LDESQLNAYKFALTKEFAVIQGPPGTGKTFLGVKIASTLLRNLSLEGTPMLIICYTNHAL 510
L+ SQ+NA K L K ++IQGPPGTGKT ++ ++ +++ +G +++C ++
Sbjct: 489 LNASQVNAVKSVLQKPISLIQGPPGTGKTV----TSAAIVYHMAKQGQGQVLVCAPSNVA 544
Query: 511 IN 516
++
Sbjct: 545 VD 546
>At1g08840.1 68414.m00984 DNA replication helicase, putative similar
to helicase [Xenopus laevis] gi|18845092|gb|AAL79550
Length = 1296
Score = 44.0 bits (99), Expect = 8e-05
Identities = 25/70 (35%), Positives = 38/70 (54%)
Frame = +1
Query: 307 LWPDESIGLDESQLNAYKFALTKEFAVIQGPPGTGKTFLGVKIASTLLRNLSLEGTPMLI 486
+W ++S+ D+ Q K K++A+I G PGTGKT V LL + G+ +L+
Sbjct: 882 IWSEKSLNNDQRQA-ILKILTAKDYALILGMPGTGKTSTMVHAVKALL----IRGSSILL 936
Query: 487 ICYTNHALIN 516
YTN A+ N
Sbjct: 937 ASYTNSAVDN 946
>At2g38770.1 68415.m04760 expressed protein
Length = 1509
Score = 38.3 bits (85), Expect = 0.004
Identities = 22/63 (34%), Positives = 33/63 (52%)
Frame = +1
Query: 322 SIGLDESQLNAYKFALTKEFAVIQGPPGTGKTFLGVKIASTLLRNLSLEGTPMLIICYTN 501
S+ +Q+ A + ++ GPPGTGKT V+I + L N + T LII ++N
Sbjct: 863 SVKFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRT--LIITHSN 920
Query: 502 HAL 510
AL
Sbjct: 921 QAL 923
>At4g15570.1 68417.m02379 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 818
Score = 34.7 bits (76), Expect = 0.050
Identities = 17/30 (56%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = +1
Query: 331 LDESQLNAYKFALT-KEFAVIQGPPGTGKT 417
L++SQ A L+ K F +IQGPPGTGKT
Sbjct: 258 LNKSQKEAIDVGLSRKSFVLIQGPPGTGKT 287
>At1g16800.1 68414.m02018 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 1939
Score = 34.3 bits (75), Expect = 0.067
Identities = 25/50 (50%), Positives = 29/50 (58%), Gaps = 7/50 (14%)
Frame = +1
Query: 334 DESQLNAYKFA-----LTKEF--AVIQGPPGTGKTFLGVKIASTLLRNLS 462
+ESQL A A L K F ++IQGPPGTGKT V I S LL + S
Sbjct: 1104 NESQLQAISVAIGSSNLMKAFDISLIQGPPGTGKTRTIVAIISGLLASAS 1153
>At2g03270.1 68415.m00280 DNA-binding protein, putative similar to
Swiss-Prot:Q60560 DNA-binding protein SMUBP-2
(Immunoglobulin MU binding protein 2) (SMUBP-2) (Insulin
II gene enhancer-binding protein)(RIPE3B-binding complex
3B2 P110 subunit) (RIP-1)[Mesocricetus auratus];
identical to putative helicase (atpc-2 gene) cDNA
NCBI_gi:11191230
Length = 639
Score = 33.9 bits (74), Expect = 0.088
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Frame = +1
Query: 331 LDESQLNAYKFALT-KEFAVIQGPPGTGKTFLGVKI 435
LD+SQ +A AL+ K+ ++ GPPGTGKT V+I
Sbjct: 190 LDQSQKDAITKALSSKDVFLLHGPPGTGKTTTVVEI 225
>At5g35970.1 68418.m04332 DNA-binding protein, putative similar to
SWISS-PROT:Q60560 DNA-binding protein SMUBP-2
(Immunoglobulin MU binding protein 2, SMUBP-2)
[Mesocricetus auratus]
Length = 961
Score = 32.7 bits (71), Expect = 0.20
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +1
Query: 334 DESQLNAYKFALTKE--FAVIQGPPGTGKTFLGVKIASTLLRNLSLEGTPMLIICYTNHA 507
D SQ A + K+ ++QGPPGTGKT + ++ + ++ +G +L+ TN A
Sbjct: 488 DSSQRRAIALGVNKKRPVMIVQGPPGTGKTGMLKEVITLAVQ----QGERVLVTAPTNAA 543
Query: 508 LIN 516
+ N
Sbjct: 544 VDN 546
>At5g66910.1 68418.m08434 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 815
Score = 31.5 bits (68), Expect = 0.47
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +1
Query: 325 IGLDESQLNAYKFALTKEFAVIQGPPGTGKTFLGVKI 435
+GLD + K L V+ GPPG GKT L K+
Sbjct: 173 VGLDWPLVELKKKLLDNSVVVVSGPPGCGKTTLVTKL 209
>At1g03000.1 68414.m00271 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 941
Score = 31.5 bits (68), Expect = 0.47
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +1
Query: 385 VIQGPPGTGKTFLGVKIASTLLRN-LSLEGTPMLIICY 495
++ GPPGTGKT L +A+ N LS++G P LI Y
Sbjct: 695 LLYGPPGTGKTLLAKAVATECSLNFLSVKG-PELINMY 731
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +1
Query: 358 KFALTKEFAVI-QGPPGTGKTFLGVKIASTLLRN-LSLEGTPMLIICY 495
KF ++ V+ GPPG GKT L IA+ N +S++G +L + +
Sbjct: 509 KFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWF 556
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +1
Query: 385 VIQGPPGTGKTFLGVKIASTLLRN 456
++ GPPGTGKT L IAS + N
Sbjct: 177 LLYGPPGTGKTLLARAIASNIDAN 200
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +1
Query: 358 KFALTKEFAVI-QGPPGTGKTFLGVKIASTLLRN-LSLEGTPMLIICY 495
KF ++ V+ GPPG GKT L IA+ N +S++G +L + +
Sbjct: 508 KFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF 555
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +1
Query: 358 KFALTKEFAVI-QGPPGTGKTFLGVKIASTLLRN-LSLEGTPMLIICY 495
KF ++ V+ GPPG GKT L IA+ N +S++G +L + +
Sbjct: 508 KFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF 555
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +1
Query: 385 VIQGPPGTGKTFLGVKIASTLLRN 456
++ GPPGTGKT L IAS + N
Sbjct: 177 LLYGPPGTGKTLLARAIASNIDAN 200
>At5g25370.1 68418.m03009 phospholipase D, putative (PLDZETA)
identical to phospholipase D zeta SP:P58766 from
[Arabidopsis thaliana]; similar to phospholipase D
[Lycopersicon esculentum] GI:12060550; contains Pfam
profile PF00614: Phospholipase D. Active site motif
Length = 820
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 20 YQITEINIAVAFQNPVSNKIFSEAYLMVESEVFFEPYHRVLKVL-QNSRP 166
+ I++I V PVS + AYL V + +P R L +L +N RP
Sbjct: 93 HSISKIIFTVKEDEPVSASLIGRAYLPVTEVITGQPIDRWLDILDENRRP 142
>At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1)
identical to peroxisome biogenesis protein PEX1
[Arabidopsis thaliana] gi|12006272|gb|AAG44817; contains
Pfam profile PF00004: ATPase, AAA family; identical to
cDNA peroxisome biogenesis protein PEX1 (PEX1) mRNA,
partial cds GI:12006271
Length = 1130
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +1
Query: 385 VIQGPPGTGKT-FLGVKIASTLLRNLSLEGTPML 483
++ GPPG GKT +G A+ LR +S++G +L
Sbjct: 882 LLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL 915
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +1
Query: 385 VIQGPPGTGKTFLGVKIASTLLRNLSLEGTPMLIICYT 498
+I GPPG+GKT L A L +L+ C T
Sbjct: 597 LIYGPPGSGKTILARAAAKYFEEQKDLLAHVILVSCST 634
>At4g24710.1 68417.m03536 AAA-type ATPase family protein similar to
HPV16 E1 protein binding protein [Homo sapiens]
gi|2232019|gb|AAB64095; contains Pfam domain, PF00004:
ATPase, AAA family ('A'TPases 'A'ssociated with diverse
cellular 'A'ctivities)
Length = 467
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +1
Query: 385 VIQGPPGTGKTFLGVKIASTLLRNLSLEGTPMLIICYTNHALINSW 522
++ GPPGTGKT L +A L + +I H+L + W
Sbjct: 206 LLHGPPGTGKTSLCKALAQKLSIRCNSRYPHCQLIEVNAHSLFSKW 251
>At4g30100.1 68417.m04280 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 1311
Score = 29.1 bits (62), Expect = 2.5
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +1
Query: 379 FAVIQGPPGTGKT 417
F ++QGPPGTGKT
Sbjct: 661 FTLVQGPPGTGKT 673
>At2g19120.1 68415.m02232 tRNA-splicing endonuclease positive
effector-related similar to Endonuclease sen1
(Swiss-Prot:Q92355) [Schizosaccharomyces pombe]; similar
to tRNA-splicing endonuclease positive effector
(Swiss-Prot:Q00416) [Saccharomyces cerevisiae]
Length = 1090
Score = 29.1 bits (62), Expect = 2.5
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +1
Query: 379 FAVIQGPPGTGKT 417
F ++QGPPGTGKT
Sbjct: 497 FTLVQGPPGTGKT 509
>At5g53540.1 68418.m06653 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 403
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 331 LDESQLNAY-KFALTKEFAVIQGPPGTGKTFLGVKIA 438
L +L AY K ++ ++ GPPGTGKT L IA
Sbjct: 107 LKRPELFAYGKLLGPQKGVLLYGPPGTGKTMLAKAIA 143
>At4g27680.1 68417.m03980 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 398
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 331 LDESQLNAY-KFALTKEFAVIQGPPGTGKTFLGVKIA 438
L +L AY K ++ ++ GPPGTGKT L IA
Sbjct: 104 LKRPELFAYGKLLGPQKGVLLYGPPGTGKTMLAKAIA 140
>At1g73960.1 68414.m08565 expressed protein similar to TATA binding
protein associated factor (GI:2827282) [Homo sapiens];
similar to Transcription initiation factor TFIID 150 kDa
subunit (TAFII-150) (TAFII150) (Swiss-Prot:Q24325)
[Drosophila melanogaster]
Length = 1390
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/27 (55%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -1
Query: 476 GVPSRDKF-LSSVEAILTPKNVFPVPG 399
GVP L VEA + PKNVF VPG
Sbjct: 997 GVPKEKPLQLVDVEACIEPKNVFLVPG 1023
>At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial
almost identical to Lon protease homolog 2
mitochondrial precursor SP:P93655, GI:1848290 from
[Arabidopsis thaliana]
Length = 940
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 388 IQGPPGTGKTFLGVKIASTLLR 453
+ GPPG GKT +G IA L R
Sbjct: 462 LSGPPGVGKTSIGRSIARALNR 483
>At3g27120.1 68416.m03393 spastin ATPase, putative similar to
SWISS-PROT:Q9QYY8 spastin (Fragment) [Mus musculus];
contains Pfam domain, PF00004: ATPase, AAA family
Length = 287
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1
Query: 394 GPPGTGKTFLGVKIA 438
GPPGTGKT +G IA
Sbjct: 50 GPPGTGKTMIGKAIA 64
>At3g21090.1 68416.m02666 ABC transporter family protein similar to
ATP-binding cassette, sub-family G (WHITE), member 2
GB:NP_036050 from [Mus musculus]
Length = 691
Score = 28.3 bits (60), Expect = 4.4
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +1
Query: 343 QLNAYKFALTKEFAVIQGPPGTGKTFLGVKIASTLLRNLSLEGTPML 483
+LN Y A I GP G+GK+ L +A L RN+ + G +L
Sbjct: 48 RLNGY--AEPGRIMAIMGPSGSGKSTLLDSLAGRLARNVVMTGNLLL 92
>At2g22740.2 68415.m02696 SET domain-containing protein (SUVH6)
identical to SUVH6 [Arabidopsis thaliana] GI:13517753;
contains Pfam profiles PF00856: SET domain, PF05033:
Pre-SET motif, PF02182: YDG/SRA domain
Length = 790
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 343 QLNAYKFALTKEFAVIQGPPGTGKTFLGVKIA 438
+++ KF K FAV PPG G + VKIA
Sbjct: 44 RMSGLKFKRRKVFAVRDFPPGCGSRAMEVKIA 75
>At2g22740.1 68415.m02695 SET domain-containing protein (SUVH6)
identical to SUVH6 [Arabidopsis thaliana] GI:13517753;
contains Pfam profiles PF00856: SET domain, PF05033:
Pre-SET motif, PF02182: YDG/SRA domain
Length = 790
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 343 QLNAYKFALTKEFAVIQGPPGTGKTFLGVKIA 438
+++ KF K FAV PPG G + VKIA
Sbjct: 44 RMSGLKFKRRKVFAVRDFPPGCGSRAMEVKIA 75
>At5g64580.1 68418.m08116 AAA-type ATPase family protein similar to
zinc dependent protease [Arabidopsis thaliana]
GI:7650138; contains Pfam profile PF00004: ATPase AAA
family
Length = 855
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 385 VIQGPPGTGKTFLGVKIA 438
++ GPPGTGKT L IA
Sbjct: 353 LLHGPPGTGKTLLAKAIA 370
>At5g45150.1 68418.m05543 ribonuclease III family protein similar to
CAF protein (RNA helicase/RNAseIII) [Arabidopsis
thaliana] GI:6102610; contains Pfam profiles PF00035:
Double-stranded RNA binding motif, PF00636 RNase3 domain
Length = 957
Score = 27.9 bits (59), Expect = 5.8
Identities = 9/30 (30%), Positives = 21/30 (70%)
Frame = +2
Query: 38 NIAVAFQNPVSNKIFSEAYLMVESEVFFEP 127
++ +AF+NP++N++ E ++ E+ + EP
Sbjct: 760 SLPIAFENPLTNELTQEQMVIDENSPYVEP 789
>At5g37160.1 68418.m04461 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 871
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 385 VIQGPPGTGKTFLGVKIASTLLR 453
+I GPPGTGKT + STL++
Sbjct: 269 LIWGPPGTGKTKTVATLLSTLMQ 291
>At5g22330.1 68418.m02605 TATA box-binding protein-interacting
protein-related similar to TATA box-binding
protein-interacting protein SP:O35753 from [ Mus
musculus]
Length = 458
Score = 27.9 bits (59), Expect = 5.8
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +1
Query: 319 ESIGLDESQLNAYKFALTKEFAVIQGPPGTGKTFLGVKIASTL 447
E+ GL + K A + ++ GPPGTGKT L + I+ L
Sbjct: 50 EAAGLVVDMIKQKKMA--GKALLLAGPPGTGKTALALGISQEL 90
>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,
putative almost identical to 26S proteasome AAA-ATPase
subunit RPT6a GI:6652888 from [Arabidopsis thaliana];
almost identical to a member of conserved Sug1 CAD
family AtSUG1 GI:13537115 from [Arabidopsis thaliana]
Length = 419
Score = 27.9 bits (59), Expect = 5.8
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +1
Query: 274 EEIQFPVLRPDLWPDESIGLDESQLNAYKFALTKEFAVIQGPPGTGKTFLGVKIA 438
E I+ P+ P+L+ ES+G+ + + ++ GPPGTGKT L +A
Sbjct: 175 EVIELPIKHPELF--ESLGIAQPK-----------GVLLYGPPGTGKTLLARAVA 216
>At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)
Length = 419
Score = 27.9 bits (59), Expect = 5.8
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +1
Query: 274 EEIQFPVLRPDLWPDESIGLDESQLNAYKFALTKEFAVIQGPPGTGKTFLGVKIA 438
E I+ P+ P+L+ ES+G+ + + ++ GPPGTGKT L +A
Sbjct: 175 EVIELPIKHPELF--ESLGIAQPK-----------GVLLYGPPGTGKTLLARAVA 216
>At4g29520.1 68417.m04211 expressed protein
Length = 306
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +3
Query: 441 NATQKFIPRRHTDVDYLLYKSRPD 512
NA QK I TDV +YKS+PD
Sbjct: 126 NACQKVIGYSDTDVAEYIYKSKPD 149
>At3g05780.1 68416.m00649 Lon protease, putative similar to Lon
protease homolog 2 SP:P93655
Length = 924
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 388 IQGPPGTGKTFLGVKIASTLLR 453
+ GPPG GKT +G IA L R
Sbjct: 445 LSGPPGVGKTSIGRSIARALDR 466
>At1g17840.1 68414.m02208 ABC transporter family protein similar to
ABC transporter GI:10280532 from [Homo sapiens]
Length = 703
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 361 FALTKEFAVIQGPPGTGKTFLGVKIASTLLRNLSLEGTPML 483
+A + GP G+GK+ + +AS L N L GT +L
Sbjct: 76 YAEPGSLTALMGPSGSGKSTMLDALASRLAANAFLSGTVLL 116
>At1g07510.1 68414.m00804 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 813
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 382 AVIQGPPGTGKTFLGVKIA-STLLRNLSLEGTPML 483
A++ GPPGTGKT L A + + LS+ G+ +
Sbjct: 363 ALLVGPPGTGKTLLAKATAGESAVPFLSISGSDFM 397
>At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3)
identical to 26S proteasome AAA-ATPase subunit RPT3
GI:6652882 from [Arabidopsis thaliana]
Length = 408
Score = 27.5 bits (58), Expect = 7.7
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 385 VIQGPPGTGKTFLGVKIAS 441
++ GPPGTGKT L +A+
Sbjct: 193 LLYGPPGTGKTMLAKAVAN 211
>At5g17730.1 68418.m02079 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 470
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 385 VIQGPPGTGKTFLGVKIASTL 447
++ GPPGTGKT L IA+ L
Sbjct: 249 LLYGPPGTGKTSLVAAIANYL 269
>At5g15250.1 68418.m01786 FtsH protease, putative similar to
FtsH-like protein Pftf precursor GI:4325041 from
[Nicotiana tabacum]
Length = 687
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 385 VIQGPPGTGKTFLGVKIA 438
++ GPPGTGKT L IA
Sbjct: 260 LLTGPPGTGKTLLAKAIA 277
>At3g19740.1 68416.m02499 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 439
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +1
Query: 394 GPPGTGKTFLGVKIASTLLRN-LSLEGTPM 480
GPPGTGKT L +A+ N +S+ G+ +
Sbjct: 192 GPPGTGKTLLAKALATEAGANFISITGSTL 221
>At2g37280.1 68415.m04573 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1413
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +1
Query: 385 VIQGPPGTGKTFLGVKIASTLLRNLSLEGTPMLIICYTNHAL 510
++ GPPG GKT L ++ L NL G I Y H L
Sbjct: 169 LLLGPPGCGKTTLLKALSGNLENNLKCYGE----ISYNGHGL 206
>At1g51500.1 68414.m05796 ABC transporter family protein similar to
GB:AAF61569 from [Bombyx mori]
Length = 687
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 388 IQGPPGTGKTFLGVKIASTLLRNLSLEGTPML 483
I GP G+GK+ L +A L RN+ + G +L
Sbjct: 60 IMGPSGSGKSTLLDSLAGRLARNVIMTGNLLL 91
>At1g50140.1 68414.m05623 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 640
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +1
Query: 394 GPPGTGKTFLGVKIASTLLRN-LSLEGTPM 480
GPPGTGKT L +A+ N +S+ G+ +
Sbjct: 393 GPPGTGKTLLAKALATEAGANFISITGSTL 422
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,218,868
Number of Sequences: 28952
Number of extensions: 305044
Number of successful extensions: 942
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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