Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0684
         (632 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)              140   6e-34
SB_40626| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_34562| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_20414| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_29188| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_8510| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.6  
SB_51402| Best HMM Match : Peptidase_M13_N (HMM E-Value=1.9e-12)       27   9.6  

>SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score =  140 bits (340), Expect = 6e-34
 Identities = 63/85 (74%), Positives = 74/85 (87%)
 Frame = +2

Query: 2   RVRMSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAV 181
           +V + +L+LQKRLAAS+++CGKKK+WLDPNE NEIAN NSRQN+RK+IKDGL+IKKP  V
Sbjct: 26  KVHVGTLRLQKRLAASLLKCGKKKIWLDPNECNEIANANSRQNVRKLIKDGLIIKKPEIV 85

Query: 182 HSRARVRKNTEARRKGRHCGFGKRK 256
           HSRARVRK  EAR KGRH G GKRK
Sbjct: 86  HSRARVRKADEARSKGRHSGHGKRK 110



 Score =  134 bits (325), Expect = 4e-32
 Identities = 64/112 (57%), Positives = 79/112 (70%)
 Frame = +1

Query: 253 KGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEY 432
           KGTANARMPQK +W                AKKID H+YHSLYMK+KGNVFKNKRVLMEY
Sbjct: 110 KGTANARMPQKTIWIRRMRVLRRLLRKYREAKKIDNHMYHSLYMKSKGNVFKNKRVLMEY 169

Query: 433 IHRKKAEKARTKMLSDQAEARRNKVRRHASAARNVLPPRRRNCCRPFAREDE 588
           IH+KKAEKAR+K+LSDQAEARRNK +       + +  +R++    +A+E+E
Sbjct: 170 IHKKKAEKARSKLLSDQAEARRNKNKAAKQRRDDRMEQKRKDMLSAYAKEEE 221


>SB_40626| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 979

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/74 (21%), Positives = 30/74 (40%)
 Frame = +1

Query: 349 KIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVRRHASAA 528
           +  R  Y +LY   KGN F +   L++       E+ R K         + ++R+  +  
Sbjct: 70  EFQRKRYGNLYQLLKGNTFTDAEDLVKLWDAAHYEEERAKKRKPLTPLAKFRIRQRFTPP 129

Query: 529 RNVLPPRRRNCCRP 570
           + + P  R+    P
Sbjct: 130 KTICPKGRQKSTLP 143


>SB_34562| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 978

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +1

Query: 433 IHRKKAEKARTKMLSDQAEARRNKVRRHASAAR-NVLPPRRRNCCRPFARE 582
           +H K  EKA      D   +R N V RH   A  ++ P   +NC + F RE
Sbjct: 443 VHNK--EKAYQCDHCDMRFSRTNDVTRHVQVAHTDIAPHECKNCSKLFGRE 491


>SB_20414| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -2

Query: 364 DACQSSWQFCTSGAIFLEPF-VFVPIVPSVAYAHW 263
           D  + S Q C     FLEP  VF P+ PS A+AH+
Sbjct: 192 DIVEKSQQACREHEAFLEPMGVFSPLPPS-AHAHF 225


>SB_29188| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 468

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 206 NTEARRKGRHCGFGKRKVLPMRVCHRRNYGYKDKGF 313
           N    RK R  GFGK+  L    C +   GY+ + F
Sbjct: 2   NLSKHRKDRFLGFGKKTSLLQDSCEQPYRGYRGRCF 37


>SB_8510| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 18/59 (30%), Positives = 24/59 (40%)
 Frame = -1

Query: 371 WYRCLSIFLAVLYFRSNFLRTLCLCTHSSFCGIRALAVPFSYQSHSDDPFYVPLCFCGH 195
           WY CLS+        SN  R       + FC + A A+  S +  S  P + P C   H
Sbjct: 51  WYACLSLGFQA----SNHPRGNIFVPGADFCHLVAPAIQVSSEYRSKVPSWSPPCSKSH 105


>SB_51402| Best HMM Match : Peptidase_M13_N (HMM E-Value=1.9e-12)
          Length = 1206

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 379 RVSGIDACQSSWQFCTSGAIFLEPFVF 299
           RV+G+    S WQ CT+ A  L+  VF
Sbjct: 493 RVAGVKKSPSRWQQCTNAANNLDGLVF 519


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,028,493
Number of Sequences: 59808
Number of extensions: 433881
Number of successful extensions: 1302
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1299
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)