Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0684
(632 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) simi... 127 5e-30
At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) simi... 125 2e-29
At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) simi... 124 4e-29
At4g16030.1 68417.m02432 60S ribosomal protein L19, putative sim... 46 3e-05
At3g27260.1 68416.m03407 DNA-binding bromodomain-containing prot... 31 0.84
At5g01770.1 68418.m00096 transducin family protein / WD-40 repea... 29 1.9
At3g30842.1 68416.m03968 ABC transporter protein, putative simil... 29 3.4
At2g40420.1 68415.m04985 amino acid transporter family protein s... 29 3.4
At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol p... 28 5.9
At5g04710.1 68418.m00480 aspartyl aminopeptidase, putative simil... 28 5.9
At2g25320.1 68415.m03029 meprin and TRAF homology domain-contain... 28 5.9
At5g67310.1 68418.m08488 cytochrome P450 family protein 27 7.8
At3g56200.1 68416.m06246 amino acid transporter family protein l... 27 7.8
At3g04340.1 68416.m00459 FtsH protease family protein similar to... 27 7.8
>At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) similar
to ribosomal protein L19 GB:CAA45090 from [Homo sapiens]
Length = 209
Score = 127 bits (307), Expect = 5e-30
Identities = 56/82 (68%), Positives = 68/82 (82%)
Frame = +2
Query: 11 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 190
M SLK+QKRLAASVM+CGK KVWLDPNE +I+ NSRQNIRK++KDG +I+KP +HSR
Sbjct: 1 MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
Query: 191 ARVRKNTEARRKGRHCGFGKRK 256
+R R EA+RKGRH G+GKRK
Sbjct: 61 SRARALNEAKRKGRHSGYGKRK 82
Score = 104 bits (249), Expect = 6e-23
Identities = 53/95 (55%), Positives = 60/95 (63%), Gaps = 2/95 (2%)
Frame = +1
Query: 253 KGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEY 432
KGT AR+P K LW +KKIDRH+YH +YMK KGNVFKNKRVLME
Sbjct: 82 KGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMYHDMYMKVKGNVFKNKRVLMES 141
Query: 433 IHRKKAEKARTKMLSDQAEARR--NKVRRHASAAR 531
IH+ KAEKAR K L+DQ EA+R NK R AR
Sbjct: 142 IHKMKAEKAREKTLADQFEAKRIKNKASRERKFAR 176
>At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) similar
to ribosomal protein L19 GI:36127 from [Homo sapiens]
Length = 214
Score = 125 bits (302), Expect = 2e-29
Identities = 56/82 (68%), Positives = 68/82 (82%)
Frame = +2
Query: 11 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 190
M SLKLQKRLAASVM+CGK KVWLDPNE ++I+ NSRQNIRK++KDG +I+KP +HSR
Sbjct: 1 MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
Query: 191 ARVRKNTEARRKGRHCGFGKRK 256
+R RK A+ KGRH G+GKRK
Sbjct: 61 SRARKMKIAKMKGRHSGYGKRK 82
Score = 103 bits (247), Expect = 1e-22
Identities = 52/95 (54%), Positives = 59/95 (62%), Gaps = 2/95 (2%)
Frame = +1
Query: 253 KGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEY 432
KGT AR+P K LW KKID+H+YH +YM+ KGNVFKNKRVLME
Sbjct: 82 KGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMYHDMYMRVKGNVFKNKRVLMES 141
Query: 433 IHRKKAEKARTKMLSDQAEARR--NKVRRHASAAR 531
IH+ KAEKAR K LSDQ EA+R NK R AR
Sbjct: 142 IHKSKAEKAREKTLSDQFEAKRAKNKASRERKHAR 176
>At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) similar
to L19 from several species
Length = 208
Score = 124 bits (300), Expect = 4e-29
Identities = 54/82 (65%), Positives = 70/82 (85%)
Frame = +2
Query: 11 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 190
M SLKLQKRLA+SV++CGK+KVWLDPNE ++I+ NSRQNIRK++KDG +I+KP +HSR
Sbjct: 1 MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
Query: 191 ARVRKNTEARRKGRHCGFGKRK 256
+R R+ A+RKGRH G+GKRK
Sbjct: 61 SRARQLNIAKRKGRHSGYGKRK 82
Score = 105 bits (253), Expect = 2e-23
Identities = 54/95 (56%), Positives = 59/95 (62%), Gaps = 2/95 (2%)
Frame = +1
Query: 253 KGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEY 432
KGT AR+P K LW KKIDRH+YH +YMK KGNVFKNKRVLME
Sbjct: 82 KGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMYHDMYMKVKGNVFKNKRVLMES 141
Query: 433 IHRKKAEKARTKMLSDQAEARR--NKVRRHASAAR 531
IH+ KAEKAR K LSDQ EA+R NK R AR
Sbjct: 142 IHKSKAEKAREKTLSDQFEAKRAKNKASRERKHAR 176
>At4g16030.1 68417.m02432 60S ribosomal protein L19, putative
similar to 60S ribosomal protein L19-3
(Swiss-Prot:P49693) [Arabidopsis thaliana]
Length = 101
Score = 45.6 bits (103), Expect = 3e-05
Identities = 20/38 (52%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Frame = +1
Query: 346 KKIDRHLY-HSLYMKAKGNVFKNKRVLMEYIHRKKAEK 456
KKID+ +Y H ++MK KG V+KNK VLME +H+ E+
Sbjct: 29 KKIDKLVYYHDMFMKVKGKVYKNKCVLMESMHKSSRER 66
>At3g27260.1 68416.m03407 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 813
Score = 30.7 bits (66), Expect = 0.84
Identities = 19/64 (29%), Positives = 32/64 (50%)
Frame = +1
Query: 391 KGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVRRHASAARNVLPPRRRNCCRP 570
KG+ + ++ E + +KK EKAR + ++ AE R + A+A R+R R
Sbjct: 562 KGDPERLRKEREELVLQKKKEKARLQAEAEAAEDARRQAEAEAAAEAAAEAKRKRELERE 621
Query: 571 FARE 582
AR+
Sbjct: 622 AARQ 625
>At5g01770.1 68418.m00096 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein mip1
(SP:P87141) [Schizosaccharomyces pombe]
Length = 1354
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = -2
Query: 268 HWQYLSLTKATVTTLSTCLCVFADTGAGVDCYRFLDDETILDHL 137
H L + A V L T L V D+G GV F DDE I++ +
Sbjct: 641 HTNLLQVRAAAVFALGTLLDVGFDSGKGVCDEEFDDDENIVEDI 684
>At3g30842.1 68416.m03968 ABC transporter protein, putative similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, ABC1 protein [Nicotiana
plumbaginifolia] GI:14331118; contains Pfam profile
PF00005: ABC transporter
Length = 1406
Score = 28.7 bits (61), Expect = 3.4
Identities = 9/24 (37%), Positives = 19/24 (79%)
Frame = -1
Query: 482 WSLSIFVLAFSAFFLWMYSMSTRL 411
W +S+ ++AFS FF+++Y+ S ++
Sbjct: 1377 WVVSLTLIAFSMFFVFIYAFSVKI 1400
>At2g40420.1 68415.m04985 amino acid transporter family protein
similar to neuronal glutamine transporter [Rattus
norvegicus] GI:6978016; contains Pfam profile PF01490:
Transmembrane amino acid transporter protein
Length = 440
Score = 28.7 bits (61), Expect = 3.4
Identities = 20/76 (26%), Positives = 34/76 (44%)
Frame = -2
Query: 364 DACQSSWQFCTSGAIFLEPFVFVPIVPSVAYAHWQYLSLTKATVTTLSTCLCVFADTGAG 185
D S + T+ + + F F V VA+ L++ AT ++ C +++ TG
Sbjct: 218 DGGLSFFSLFTASPVIVTAFTFHFNVHPVAFELKDPLNVLSATRISVILCATIYSATG-- 275
Query: 184 VDCYRFLDDETILDHL 137
+ CY D T+ D L
Sbjct: 276 LFCYLLFGDSTMTDVL 291
>At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol
protease, putative similar to cysteine proteinase RD21A
precursor (thiol protease) GI:435619, SP:P43297 from
[Arabidopsis thaliana]
Length = 463
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -3
Query: 171 GFLMTRPSLIILRMFCLELVFAISLISFGSNH 76
GFL P +++L M + +S+IS+ NH
Sbjct: 2 GFLKLSPMILLLAMIGVSYAMDMSIISYDENH 33
>At5g04710.1 68418.m00480 aspartyl aminopeptidase, putative similar
to SP|Q9ULA0 Aspartyl aminopeptidase (EC 3.4.11.21)
{Homo sapiens}; contains Pfam profile PF02127:
Aminopeptidase I zinc metalloprotease (M18)
Length = 526
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 87 GSNHTFFLPHRITEAASLFCSLRELI 10
G+N+ F R+ AS FC+LR LI
Sbjct: 298 GANNEFIFSGRLDNLASSFCALRALI 323
>At2g25320.1 68415.m03029 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 1663
Score = 27.9 bits (59), Expect = 5.9
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -3
Query: 501 IAAGLSLVAKHLRPGLLSLLPVDVLH-EHTLVLEHITLRL 385
IA L KHL+P L+SL+P V H EH L + RL
Sbjct: 974 IALVLDRAPKHLQPDLVSLVPKLVEHSEHPLAALALIERL 1013
>At5g67310.1 68418.m08488 cytochrome P450 family protein
Length = 507
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -2
Query: 400 HYPSPSCRVSGIDACQSSWQFCTSGAIFLEPFVF 299
H S C V+G D + +W F + AI +P V+
Sbjct: 382 HASSTDCEVAGFDIPRRTWLFINAWAIQRDPNVW 415
>At3g56200.1 68416.m06246 amino acid transporter family protein low
similarity to N system amino acids transporter NAT-1
[Mus musculus] GI:7406950; belongs to INTERPRO:IPR002422
amino acid/polyamine transporter, family II
Length = 435
Score = 27.5 bits (58), Expect = 7.8
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
Frame = -2
Query: 352 SSWQFCTSGAIFLEPFVFVPIVPSVAYAHWQYLSLTKATVTTLSTCLCVFADTGAGVDCY 173
S WQ T+ + + F F V + + L + AT ++ C ++ T G+ Y
Sbjct: 220 SFWQLFTASPVIVTAFTFHFNVHPIGFELKDPLQVIPATKISVILCAAIYFAT--GLFGY 277
Query: 172 RFLDDETILDHLT--DVLSGVGVCDLIDFI 89
D T+ D L D SG + L++ I
Sbjct: 278 LLFGDATMSDILVNFDQSSGSSIGSLLNDI 307
>At3g04340.1 68416.m00459 FtsH protease family protein similar to
chloroplast FtsH protease [Arabidopsis thaliana]
GI:1483215; contains Pfam profiles PF01434: Peptidase
family M41, PF00004: ATPase AAA family
Length = 960
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +1
Query: 343 AKKIDRHLYHSLYMKAKGNVFKNKRVL 423
A K+++ +Y Y KAKG + KN+RVL
Sbjct: 870 AGKVEK-IYDLAYEKAKGMLLKNRRVL 895
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,780,094
Number of Sequences: 28952
Number of extensions: 297729
Number of successful extensions: 877
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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