Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0682
(615 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 1e-05
SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 7e-04
SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.011
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.046
SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22) 32 0.42
SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082) 32 0.42
SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0) 28 6.9
SB_17542| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_51558| Best HMM Match : DSS1_SEM1 (HMM E-Value=0.2) 27 9.1
SB_21281| Best HMM Match : CRA_rpt (HMM E-Value=5.7) 27 9.1
>SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 128
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/24 (87%), Positives = 22/24 (91%)
Frame = -2
Query: 416 DVVAVSQAPSPESNPDSPLPVTTM 345
DVVAVSQAPSPESNP+SP PV TM
Sbjct: 105 DVVAVSQAPSPESNPNSPSPVVTM 128
>SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 212
Score = 41.1 bits (92), Expect = 7e-04
Identities = 18/21 (85%), Positives = 19/21 (90%)
Frame = -2
Query: 407 AVSQAPSPESNPDSPLPVTTM 345
AVSQAPSPESNP+SP PV TM
Sbjct: 52 AVSQAPSPESNPNSPSPVVTM 72
>SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 162
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/26 (73%), Positives = 19/26 (73%)
Frame = +2
Query: 2 VVICLSQRLSHACLSASRIKAIPRMA 79
VVICLSQRLSHACLS S RMA
Sbjct: 136 VVICLSQRLSHACLSISTCTVKLRMA 161
>SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 37.1 bits (82), Expect = 0.011
Identities = 19/26 (73%), Positives = 19/26 (73%)
Frame = +2
Query: 2 VVICLSQRLSHACLSASRIKAIPRMA 79
VVICLSQRLSHACLS S RMA
Sbjct: 112 VVICLSQRLSHACLSISTRTVKLRMA 137
>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 337
Score = 35.1 bits (77), Expect = 0.046
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = -3
Query: 406 PFLRLPLRNRTLIPRYP 356
PFLRLPLRNRTLI R+P
Sbjct: 224 PFLRLPLRNRTLILRHP 240
>SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22)
Length = 1797
Score = 31.9 bits (69), Expect = 0.42
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +3
Query: 6 LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 140
L CL D A+ ++ + +Y W+N+ +LV L ++ CG+S
Sbjct: 447 LMTCLYDKAVFLTDEEYAAKYGRWVNVQMLVEEPELHFIAKCGSS 491
>SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082)
Length = 1304
Score = 31.9 bits (69), Expect = 0.42
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +3
Query: 6 LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 140
L CL D A+ ++ + +Y W+N+ +LV L ++ CG+S
Sbjct: 866 LMTCLYDKAVFLTDEEYAAKYGRWVNVQMLVEEPELHFIAKCGSS 910
>SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
Length = 441
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 425 PSLDVVAVSQAPSPESNPDSPLP 357
P+ DV+A Q P P S D PLP
Sbjct: 75 PAEDVMAAHQEPKPTSAIDQPLP 97
>SB_17542| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 181
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -2
Query: 560 TCPPNCSSLKYLKCTHSVTRPRKSPVSLFFVTTSRAG 450
TC C+++ +L C S + P KS +FF G
Sbjct: 113 TCLCRCTAMSFLVCARSRSSPGKSHDRVFFSAVDNHG 149
>SB_51558| Best HMM Match : DSS1_SEM1 (HMM E-Value=0.2)
Length = 878
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -2
Query: 611 IFSIRYXSWNYRGCWHQTCPPNCSSLKYLKCTHSVTRPR 495
IF I SWN+R + ++ P S K ++ RPR
Sbjct: 155 IFGINLPSWNFRNAYARSGPWRVSGWKPFGMRSTMWRPR 193
>SB_21281| Best HMM Match : CRA_rpt (HMM E-Value=5.7)
Length = 403
Score = 27.5 bits (58), Expect = 9.1
Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Frame = +2
Query: 266 RSHGQVPATHLSNVRLINFRW*FLRLPWLSRVTGNQGSIPEREPEKRLPHPRKAAGAQIT 445
R P L RL F L + W N+ +IP RE E+R AAGA I
Sbjct: 49 RHEAWAPYRQLEEERLFAFGEHRLSMDWEGWRMLNEEAIPRREVEER-KKAATAAGASIA 107
Query: 446 -HSRH 457
H +H
Sbjct: 108 EHIKH 112
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,941,332
Number of Sequences: 59808
Number of extensions: 400471
Number of successful extensions: 1081
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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