Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0681
(709 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54784| Best HMM Match : No HMM Matches (HMM E-Value=.) 135 3e-32
SB_22619| Best HMM Match : TSP_1 (HMM E-Value=8.5e-14) 34 0.13
SB_18608| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.92
SB_9147| Best HMM Match : Sushi (HMM E-Value=0) 30 2.1
SB_21168| Best HMM Match : WD40 (HMM E-Value=6.3e-15) 29 4.9
SB_18606| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_22899| Best HMM Match : Glyco_transf_8 (HMM E-Value=9.5e-15) 28 6.5
SB_27815| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 28 8.5
>SB_54784| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 553
Score = 135 bits (327), Expect = 3e-32
Identities = 59/83 (71%), Positives = 69/83 (83%)
Frame = +1
Query: 1 WRQKLDTQRGAVLANELRNNSCKLAKWTVQALLAGSDQIKFGYVSRAQVRDNSRHVILGT 180
WRQKLD+QRGAVLA EL+NNSCKLAKWT ++LAGS+ +K GYVSR D S+H ILGT
Sbjct: 386 WRQKLDSQRGAVLATELKNNSCKLAKWTANSILAGSEYLKLGYVSRVNFLDTSKHTILGT 445
Query: 181 QQFKPHEFAAQINLSMDNAWGIL 249
QQF+P EFA QI L+MDNAWG+L
Sbjct: 446 QQFRPREFATQIALNMDNAWGVL 468
Score = 68.1 bits (159), Expect = 7e-12
Identities = 28/45 (62%), Positives = 38/45 (84%)
Frame = +3
Query: 255 IIDICMKQKDGKYLIMKDPNKPLIRLYDIPDNTFESDASEESGDE 389
IIDICMKQ +GK LI+KDP+K +IR+YDIP++TFE+D ++ DE
Sbjct: 471 IIDICMKQPEGKLLILKDPSKGVIRIYDIPNSTFETDEEDDDDDE 515
>SB_22619| Best HMM Match : TSP_1 (HMM E-Value=8.5e-14)
Length = 506
Score = 33.9 bits (74), Expect = 0.13
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Frame = +2
Query: 20 RSAAPCSPTSCGTTPASSPSGPCRHYX-------RARTRSSSVTCPARRC 148
R PC P +C + SS GPC H R RT++ S CP RC
Sbjct: 83 RRPPPCPPRNCAVSAWSS-WGPCTHQCGNAGTQTRTRTKTVSEACPGGRC 131
>SB_18608| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 574
Score = 31.1 bits (67), Expect = 0.92
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Frame = +3
Query: 315 KPLIRLYDIPDNTFESDASEESGDEQAD---TPFAPLYSYGNSKRV*NSTLSIQRARELT 485
K L R+ D+ D E+ ++ +S EQ+ +PF L++ GNSKR +S S + E+
Sbjct: 325 KRLGRVLDVRDLASEASSTMDSESEQSSVNASPFRKLHTQGNSKRS-HSGESNCNSLEIG 383
Query: 486 VTIEYAISKGHISENVKSSGVKK 554
A S+ +S N +K
Sbjct: 384 TMSSKAQSRYSVSRNNSQDSPEK 406
>SB_9147| Best HMM Match : Sushi (HMM E-Value=0)
Length = 1656
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/44 (25%), Positives = 20/44 (45%)
Frame = +2
Query: 5 DRSWTRSAAPCSPTSCGTTPASSPSGPCRHYXRARTRSSSVTCP 136
++SW++ C+P CG P + G ++ + TCP
Sbjct: 1232 NKSWSKVEFTCNPVPCGPLPLPARGGSASSTGTTFSQRYTFTCP 1275
>SB_21168| Best HMM Match : WD40 (HMM E-Value=6.3e-15)
Length = 476
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 324 IRLYDIPDNTFESDASEESGDEQADT 401
IR Y +PD T + +ESGDE T
Sbjct: 429 IRRYGLPDQTDTESSEDESGDEYGGT 454
>SB_18606| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1401
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +2
Query: 2 GDRSWTRSAAPCSPTSCGTTPASSPSGPCRHY 97
G RS + P SPT GTT AS+P P H+
Sbjct: 860 GRRSKSSPEIPVSPTVLGTT-ASAPVSPVHHH 890
>SB_22899| Best HMM Match : Glyco_transf_8 (HMM E-Value=9.5e-15)
Length = 847
Score = 28.3 bits (60), Expect = 6.5
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = -3
Query: 284 VLLLHAYVDDHR--RMPQALSMDRLIW-AANSCGLNCCVPRMTWRELSRTCARD 132
VLL H Y D R +P A ++ RLI + CC P W+E R +++
Sbjct: 328 VLLWHLYADTGRWKPLPFAYNVRRLIHHPMKAFHFACCPPPKPWKEHCRPSSKE 381
>SB_27815| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 67
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -1
Query: 538 LFTFSEMCPFEIAYSIVTV 482
L T S CP E++YSI TV
Sbjct: 6 LITISTFCPSEVSYSITTV 24
>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
Length = 1467
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 23 SAAPCSPTSCGTTPASSPSGPCRHYXRARTRSSSVTCPA 139
S +P SP+ T+P SPS P Y A + S S T P+
Sbjct: 425 SMSPASPSYSPTSPGYSPSSPSSGYSPA-SPSYSPTSPS 462
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,026,908
Number of Sequences: 59808
Number of extensions: 288587
Number of successful extensions: 901
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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