Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0681
         (709 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g44320.1 68418.m05427 eukaryotic translation initiation facto...   117   7e-27
At4g20980.1 68417.m03037 eukaryotic translation initiation facto...   114   5e-26
At3g63200.1 68416.m07100 patatin-related low similarity to patat...    29   4.0  
At1g52040.1 68414.m05871 jacalin lectin family protein nearly id...    29   4.0  
At4g38600.1 68417.m05464 HECT-domain-containing protein / ubiqui...    28   7.0  
At4g21220.1 68417.m03069 bacterial transferase hexapeptide repea...    28   7.0  
At5g50300.1 68418.m06228 xanthine/uracil/vitamin C permease fami...    27   9.2  

>At5g44320.1 68418.m05427 eukaryotic translation initiation factor 3
           subunit 7, putative / eIF-3 zeta, putative / eIF3d,
           putative similar to initiation factor 3d [Arabidopsis
           thaliana] GI:12407755, SP|O15371 Eukaryotic translation
           initiation factor 3 subunit 7 (eIF-3 zeta) (eIF3 p66)
           (eIF3d) {Homo sapiens}; contains Pfam profile PF05091:
           Eukaryotic translation initiation factor 3 subunit 7
           (eIF-3)
          Length = 588

 Score =  117 bits (282), Expect = 7e-27
 Identities = 53/83 (63%), Positives = 64/83 (77%)
 Frame = +1

Query: 1   WRQKLDTQRGAVLANELRNNSCKLAKWTVQALLAGSDQIKFGYVSRAQVRDNSRHVILGT 180
           WRQKL+TQRGAVLANEL+NN  KLAKWT QALLA +D +K G+VSR   RD+  HVIL  
Sbjct: 423 WRQKLETQRGAVLANELKNNGNKLAKWTAQALLANADMMKIGFVSRVHPRDHFNHVILSV 482

Query: 181 QQFKPHEFAAQINLSMDNAWGIL 249
             +KP +FA QINL+ +N WGI+
Sbjct: 483 LGYKPKDFAGQINLNTNNMWGIV 505



 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 24/52 (46%), Positives = 38/52 (73%), Gaps = 2/52 (3%)
 Frame = +3

Query: 255 IIDICMKQKDGKYLIMKDPNKPLIRLYDIPDNTFESDASEE--SGDEQADTP 404
           I+D+CMK  +GKY+++KDP+KP +R+Y++P + F++D  EE    DEQ   P
Sbjct: 508 IVDLCMKLSEGKYVLVKDPSKPQVRIYEVPADAFDNDYVEEPLPEDEQVQPP 559


>At4g20980.1 68417.m03037 eukaryotic translation initiation factor 3
           subunit 7, putative / eIF-3 zeta, putative / eIF3d,
           putative similar to initiation factor 3d [Arabidopsis
           thaliana] GI:12407755, SP|O15371 Eukaryotic translation
           initiation factor 3 subunit 7 (eIF-3 zeta) (eIF3 p66)
           (eIF3d) {Homo sapiens}; contains Pfam profile PF05091:
           Eukaryotic translation initiation factor 3 subunit 7
           (eIF-3)
          Length = 591

 Score =  114 bits (275), Expect = 5e-26
 Identities = 52/83 (62%), Positives = 62/83 (74%)
 Frame = +1

Query: 1   WRQKLDTQRGAVLANELRNNSCKLAKWTVQALLAGSDQIKFGYVSRAQVRDNSRHVILGT 180
           WRQKL+TQRGAVLA EL+NN  KLAKWT QALLA +D +K G+VSR   RD+  HVIL  
Sbjct: 428 WRQKLETQRGAVLATELKNNGNKLAKWTAQALLANADMMKIGFVSRVHPRDHFNHVILSV 487

Query: 181 QQFKPHEFAAQINLSMDNAWGIL 249
             +KP +FA QINL+  N WGI+
Sbjct: 488 LGYKPKDFAGQINLNTSNMWGIV 510



 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 21/41 (51%), Positives = 34/41 (82%)
 Frame = +3

Query: 255 IIDICMKQKDGKYLIMKDPNKPLIRLYDIPDNTFESDASEE 377
           I+D+CMK  +GKY+++KDP+KP +R+Y++P + FE+D  EE
Sbjct: 513 IVDLCMKLSEGKYVLVKDPSKPQVRIYEVPPDAFENDYVEE 553


>At3g63200.1 68416.m07100 patatin-related low similarity to
           patatin-like latex protein allergen Hev b 7 - Hevea
           brasiliensis, EMBL:AF113546; contains patatin domain
           PF01734
          Length = 384

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +3

Query: 255 IIDICMKQKDGKYLIMKDPNKP-LIRLYDI 341
           +++   +++DGK L MKD  KP L+  YD+
Sbjct: 137 VLETAFRREDGKVLTMKDTCKPLLVPCYDL 166


>At1g52040.1 68414.m05871 jacalin lectin family protein nearly
           identical to myrosinase-binding protein homolog
           GI:2997767 from [Arabidopsis thaliana]; contains Pfam
           profile PF01419 jacalin-like lectin domain; identical to
           cDNA myrosinase-binding protein homolog  GI:2997766
          Length = 462

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
 Frame = +1

Query: 100 AGSDQIKFGYVS--RAQVRDNSRHVILGTQQFK--PHEFAAQINLSMDNAWG 243
           +G   +KF Y    + + RD+ +  +LGT++F+    ++   I +S+D  +G
Sbjct: 189 SGVAYVKFEYEKDGKRETRDHGKMTLLGTEEFEVDSDDYITSIEVSVDKVFG 240


>At4g38600.1 68417.m05464 HECT-domain-containing protein /
           ubiquitin-transferase family protein similar to
           SP|Q14669Thyroid receptor interacting protein 12
           (TRIP12) {Homo sapiens}; contains Pfam profile PF00632:
           HECT-domain (ubiquitin-transferase)
          Length = 1888

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 18/39 (46%), Positives = 21/39 (53%)
 Frame = +2

Query: 8   RSWTRSAAPCSPTSCGTTPASSPSGPCRHYXRARTRSSS 124
           R+   SAAP S +S    P S+ SGP     RAR  SSS
Sbjct: 8   RAEATSAAPSSSSSSPPPPPSA-SGPTTRSKRARLSSSS 45


>At4g21220.1 68417.m03069 bacterial transferase hexapeptide
           repeat-containing protein similar to
           UDP-3-O-[3-hydroxymyristoyl] glucosamine
           N-acyltransferase (EC 2.3.1.-) (FirA protein)
           {Escherichia coli} SP|P21645; contains Pfam profile
           PF00132: Bacterial transferase hexapeptide (three
           repeats)
          Length = 304

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -3

Query: 266 YVDDHRRM---PQALSMDRLIWAANSCGLNCCVPRMTWRE 156
           YVD+H  M   PQ L++   I      G N C+ R +WRE
Sbjct: 162 YVDEHGNMVKKPQTLNVK--IGNRVEIGANTCIDRGSWRE 199


>At5g50300.1 68418.m06228 xanthine/uracil/vitamin C permease family
           protein contains Pfam profile PF00860: Permease family
          Length = 530

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 23  SAAPCSPTSCGTTPASSPSGP 85
           S A CS   C T  +SSP GP
Sbjct: 68  SGATCSINDCSTVASSSPPGP 88


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,724,065
Number of Sequences: 28952
Number of extensions: 196249
Number of successful extensions: 620
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)