Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0680
         (596 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                97   9e-21
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)              86   2e-17
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 84   7e-17
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           77   1e-14
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     33   0.18 
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.23 
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               32   0.31 
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    32   0.31 
SB_57699| Best HMM Match : efhand (HMM E-Value=1e-08)                  31   0.93 
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              30   1.6  
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_32009| Best HMM Match : PKD (HMM E-Value=1.9e-19)                   29   3.8  
SB_28831| Best HMM Match : GCK (HMM E-Value=3.1)                       29   3.8  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.8  
SB_20174| Best HMM Match : DedA (HMM E-Value=3.7)                      28   5.0  
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              28   5.0  
SB_59700| Best HMM Match : SCP (HMM E-Value=1.6e-14)                   27   8.7  
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)              27   8.7  

>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 97.1 bits (231), Expect = 9e-21
 Identities = 44/49 (89%), Positives = 46/49 (93%)
 Frame = +1

Query: 106 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 252
           M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score = 85.8 bits (203), Expect = 2e-17
 Identities = 37/63 (58%), Positives = 48/63 (76%)
 Frame = +2

Query: 320 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 499
           +D+ L +F+T    +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG    GQ
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60

Query: 500 TRE 508
           TRE
Sbjct: 61  TRE 63


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 84.2 bits (199), Expect = 7e-17
 Identities = 37/39 (94%), Positives = 38/39 (97%)
 Frame = +2

Query: 311 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 427
           GITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 22  GITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60



 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 18/19 (94%), Positives = 19/19 (100%)
 Frame = +3

Query: 252 GKGSFKYAWVLDKLKAERD 308
           GKGSFKYAWVLDKLKAER+
Sbjct: 2   GKGSFKYAWVLDKLKAERE 20


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 31/66 (46%), Positives = 46/66 (69%)
 Frame = +2

Query: 311 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 490
           G T+++    F+T   + T++DAPGH+ F+ NMI+G +QAD  VL+++A  GEFE G  +
Sbjct: 207 GNTVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFER 266

Query: 491 NGQTRE 508
            GQTRE
Sbjct: 267 GGQTRE 272



 Score = 33.1 bits (72), Expect = 0.18
 Identities = 12/24 (50%), Positives = 19/24 (79%)
 Frame = +1

Query: 190 YKCGGIDKRTIEKFEKEAQEMGKD 261
           Y  G +DKRT+EK+E+EA+E  ++
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRE 189



 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +1

Query: 511 ALLAFTLGVKQLIVGVNQMDXTEPPYSE 594
           A+LA T GVK L++ VN+MD     ++E
Sbjct: 274 AMLAKTAGVKHLVILVNKMDDPTVKWNE 301


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 12/52 (23%), Positives = 26/52 (50%)
 Frame = +2

Query: 311 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 466
           GI++  ++  F      + I+D PGH+DF ++     +  D  ++++    G
Sbjct: 64  GISVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +2

Query: 362 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 466
           +T ID PGH  F      G +  D  VL+VAA  G
Sbjct: 78  ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +2

Query: 311 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 457
           GIT  I  +  +     +  +D PGH  F      G    D  +++VAA
Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +1

Query: 106 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 201
           M K+    N+ VI HVD GKST T  L+ K G
Sbjct: 12  MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43



 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 356 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 466
           + + +ID+PGH DF   +       D A+++V   +G
Sbjct: 99  FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135


>SB_57699| Best HMM Match : efhand (HMM E-Value=1e-08)
          Length = 676

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -2

Query: 319 CDTXSRSAFSLSNTQAYLKDPFPF-PGPPSRTSRWYV 212
           C T S   + +   QA + DPFP  PG   +  +W++
Sbjct: 135 CQTLSAEVYLVKRCQAKVPDPFPLHPGTSPKNRKWWL 171


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 368 IIDAPGHRDFIKNMITGTSQADCAVLIV 451
           IID PGH  F      G+S  D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709


>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +1

Query: 121 THINIVVIGHVDSGKSTTTGHLIY 192
           T I + V+G+V+SGKST  G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134


>SB_32009| Best HMM Match : PKD (HMM E-Value=1.9e-19)
          Length = 3083

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = -2

Query: 337 PESNIDCDTXSRSAFSLSNTQAYLKDPFPFPGPPSRTSRWYVCQ 206
           P+   DCD  +R  + ++N   YL DP    G P R   WY CQ
Sbjct: 611 PKVKQDCD-GNRHCY-VNNGITYLGDPCV--GSPKRFQMWYSCQ 650


>SB_28831| Best HMM Match : GCK (HMM E-Value=3.1)
          Length = 320

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 21/86 (24%), Positives = 37/86 (43%)
 Frame = -2

Query: 481 TSFEFTGTGSYDEHSAISLRGSCDHVLDEISVSRSINDGNIVLASFELPESNIDCDTXSR 302
           T      TG  ++H+A+    S +    EI    SIN G+I  +  ++ E  +   +   
Sbjct: 163 TGSHLDATGCGEDHAALIAEASAEEPEKEIKRENSIN-GSIDSSWSKISEEELKSHSCRD 221

Query: 301 SAFSLSNTQAYLKDPFPFPGPPSRTS 224
           +  S +++      P P P P  R+S
Sbjct: 222 TLHSAADSTG---KPVPSPSPSGRSS 244


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 130  NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 228
            N  ++ HVD GKST    L+   G I K +  K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975


>SB_20174| Best HMM Match : DedA (HMM E-Value=3.7)
          Length = 228

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +1

Query: 124 HINIVVIGHVDSGKSTTTGHLIY---KCGGIDKRTIEKFEKEAQEMGKDPSNML 276
           H+   VIGH+    ST  GHLI     C  + + + + F+++   + K  +N+L
Sbjct: 169 HLTSTVIGHLQHLTSTVIGHLIVIDGDCHSLTEISNQGFDRKTNLLCKLGTNIL 222


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 371 IDAPGHRDFIKNMITGTSQADCAVLIVA 454
           +D PGH   +  M+ G +  D A+L++A
Sbjct: 69  VDCPGHDILMATMLNGAAVMDAALLLIA 96


>SB_59700| Best HMM Match : SCP (HMM E-Value=1.6e-14)
          Length = 427

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 19/51 (37%), Positives = 24/51 (47%)
 Frame = -2

Query: 382 RSINDGNIVLASFELPESNIDCDTXSRSAFSLSNTQAYLKDPFPFPGPPSR 230
           RSI D +   + FEL E N       R   SL N Q+   +P   P PP+R
Sbjct: 26  RSIEDNSENNSPFELSERNCLKSRKIRKLPSLENLQS-PNNPIGEPSPPAR 75


>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
          Length = 203

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +2

Query: 362 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR 505
           +T++D PGH   IK +I G      A +I   GT   E G  ++G+ +
Sbjct: 104 MTLVDCPGHASLIKTIIGG------AQIIGECGT--IEGGFGQSGKVK 143


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,088,973
Number of Sequences: 59808
Number of extensions: 348614
Number of successful extensions: 843
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)