Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0678
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36462| Best HMM Match : efhand (HMM E-Value=5.8e-09)                69   3e-12
SB_47179| Best HMM Match : Carboxyl_trans (HMM E-Value=0)              56   2e-08
SB_49196| Best HMM Match : efhand (HMM E-Value=3.4e-39)                33   0.20 
SB_44952| Best HMM Match : efhand (HMM E-Value=3.4e-39)                33   0.20 
SB_36414| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.20 
SB_7126| Best HMM Match : efhand (HMM E-Value=2e-26)                   33   0.27 
SB_3425| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.4  
SB_58660| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_23574| Best HMM Match : efhand (HMM E-Value=2e-05)                  28   5.7  
SB_57618| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_49134| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_38969| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_37793| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_22989| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_18984| Best HMM Match : DNA_topoisoIV (HMM E-Value=0)               28   7.6  
SB_8146| Best HMM Match : efhand (HMM E-Value=1.2e-16)                 28   7.6  
SB_6736| Best HMM Match : efhand (HMM E-Value=2.6e-21)                 28   7.6  
SB_20632| Best HMM Match : Cu_bind_like (HMM E-Value=0.51)             28   7.6  

>SB_36462| Best HMM Match : efhand (HMM E-Value=5.8e-09)
          Length = 402

 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 42/99 (42%), Positives = 57/99 (57%), Gaps = 13/99 (13%)
 Frame = +2

Query: 263 AYNSGYPGQAAYGGMPPGQ--LEIG-HGP----YP---SIGVGGT---ITPQVQQWFRAV 403
           +YN GY G   YG  P G    + G +GP    YP   S   GG    + P + QWF+AV
Sbjct: 51  SYNPGYGGHQGYGQQPHGYGGQQYGQYGPPPSAYPGQFSAPTGGPPPGVDPSLWQWFQAV 110

Query: 404 DKDQSGFITSTELRSALVNAQGQTFSETACNLMIGCSTK 520
           D+D++G IT++ELR+ALVN+    F+E  C +MIG   K
Sbjct: 111 DQDRTGKITASELRAALVNSNWSQFNEETCRMMIGMFDK 149


>SB_47179| Best HMM Match : Carboxyl_trans (HMM E-Value=0)
          Length = 622

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 35/90 (38%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
 Frame = +2

Query: 275 GYPGQAAYGGMPPGQLEIGHGPYPSIGVGGT--ITPQVQQWFRAVDKDQSGFITSTELRS 448
           GYP Q      PPG    G+G  PS   G      P +  WF AVD+D+SG I+S EL  
Sbjct: 427 GYPPQQP--SYPPG----GYGGPPSAPYGAPPGADPTLWNWFIAVDRDRSGAISSDELEQ 480

Query: 449 ALVNAQGQTFSETACNLMIGCSTKTATGRL 538
           AL+N     F++  C LMIG      +G +
Sbjct: 481 ALMNNNWSRFNQETCRLMIGLFDHDQSGTI 510


>SB_49196| Best HMM Match : efhand (HMM E-Value=3.4e-39)
          Length = 659

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 15/43 (34%), Positives = 27/43 (62%)
 Frame = +2

Query: 377 QVQQWFRAVDKDQSGFITSTELRSALVNAQGQTFSETACNLMI 505
           ++++ FR  DKD +GFI++ ELR  + N  G+  ++   + MI
Sbjct: 74  EIREAFRVFDKDGNGFISAAELRHVMTNL-GEKLTDEEVDEMI 115


>SB_44952| Best HMM Match : efhand (HMM E-Value=3.4e-39)
          Length = 250

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 15/43 (34%), Positives = 27/43 (62%)
 Frame = +2

Query: 377 QVQQWFRAVDKDQSGFITSTELRSALVNAQGQTFSETACNLMI 505
           ++++ FR  DKD +GFI++ ELR  + N  G+  ++   + MI
Sbjct: 74  EIREAFRVFDKDGNGFISAAELRHVMTNL-GEKLTDEEVDEMI 115


>SB_36414| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 299

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 15/43 (34%), Positives = 27/43 (62%)
 Frame = +2

Query: 377 QVQQWFRAVDKDQSGFITSTELRSALVNAQGQTFSETACNLMI 505
           ++++ FR  DKD +GFI++ ELR  + N  G+  ++   + MI
Sbjct: 85  EIREAFRVFDKDGNGFISAAELRHVMTNL-GEKLTDEEVDEMI 126


>SB_7126| Best HMM Match : efhand (HMM E-Value=2e-26)
          Length = 213

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = +2

Query: 377 QVQQWFRAVDKDQSGFITSTELRSALVNAQGQTFSETACNLMI 505
           ++++ FR  DKD +GFI++ ELR  + N  G+  ++     MI
Sbjct: 49  EIREAFRVFDKDGNGFISAAELRHVMTNL-GEKLTDEEVEEMI 90


>SB_3425| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 304

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +2

Query: 380 VQQWFRAVDKDQSGFITSTELRSALVNAQGQTFSETACNLMIGCSTKTATGRL 538
           ++Q FR  D++  G+I++ ELR A V   G   ++     +IG   +   G+L
Sbjct: 219 LRQAFRVFDRNGDGYISAEELRVA-VTTLGDALTQDEAEELIGMLDQDGDGKL 270


>SB_58660| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 960

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 383 QQWFRAVDKDQSGFITSTELRSALVNAQGQTFSETACNLMIG 508
           + +F   DKD+ GFI   EL  AL +   Q+ +    N ++G
Sbjct: 315 RHYFTKNDKDKDGFINHRELLKALRDLYAQSITVEQVNAILG 356


>SB_23574| Best HMM Match : efhand (HMM E-Value=2e-05)
          Length = 69

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 392 FRAVDKDQSGFITSTELRSALVNAQGQTFSETACNLMIG 508
           F+  D++ +G I + ELR  L +   +   E   NLM+G
Sbjct: 11  FKVFDRNGNGLIGAAELRHLLASLGDKLSDEEVDNLMVG 49


>SB_57618| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +2

Query: 323 EIGHGPYPSIGVGGTITPQVQQWFRA----VDKDQSGFITSTELRSAL 454
           E GHG  P  GVGG       +  R+    +D   S F+ +TE +S++
Sbjct: 96  EAGHGKGPCDGVGGAAKRMADEAVRSGKVVIDDAHSFFVWATEYQSSV 143


>SB_49134| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1060

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +2

Query: 323  EIGHGPYPSIGVGGTITPQVQQWFRA----VDKDQSGFITSTELRSAL 454
            E GHG  P  GVGG       +  R+    +D   S F+ +TE +S++
Sbjct: 917  EAGHGKGPCDGVGGAAKRMADEAVRSGKVVIDDAHSFFVWATEYQSSV 964


>SB_38969| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 200

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +2

Query: 323 EIGHGPYPSIGVGGTITPQVQQWFRA----VDKDQSGFITSTELRSAL 454
           E GHG  P  GVGG       +  R+    +D   S F+ +TE +S++
Sbjct: 32  EAGHGKGPCDGVGGAAKRMADEAVRSGKVVIDDAHSFFVWATEYQSSV 79


>SB_37793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 698

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +2

Query: 323 EIGHGPYPSIGVGGTITPQVQQWFRA----VDKDQSGFITSTELRSAL 454
           E GHG  P  GVGG       +  R+    +D   S F+ +TE +S++
Sbjct: 470 EAGHGKGPCDGVGGAAKRMADEAVRSGKVVIDDAHSFFVWATEYQSSV 517


>SB_22989| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 278

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +2

Query: 323 EIGHGPYPSIGVGGTITPQVQQWFRA----VDKDQSGFITSTELRSAL 454
           E GHG  P  GVGG       +  R+    +D   S F+ +TE +S++
Sbjct: 66  EAGHGKGPCDGVGGAAKRMADEAVRSGKVVIDDAHSFFVWATEYQSSV 113


>SB_18984| Best HMM Match : DNA_topoisoIV (HMM E-Value=0)
          Length = 1182

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +2

Query: 323 EIGHGPYPSIGVGGTITPQVQQWFRA----VDKDQSGFITSTELRSAL 454
           E GHG  P  GVGG       +  R+    +D   S F+ +TE +S++
Sbjct: 176 EAGHGKGPCDGVGGAAKRMADEAVRSGKVVIDDAHSFFVWATEYQSSV 223


>SB_8146| Best HMM Match : efhand (HMM E-Value=1.2e-16)
          Length = 285

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +2

Query: 371 TPQVQQWFRAVDKDQSGFITSTELRSAL 454
           T +++  F+++DKD  GFIT  +L+  +
Sbjct: 72  TQEIRMAFKSMDKDGDGFITFGDLKKTM 99


>SB_6736| Best HMM Match : efhand (HMM E-Value=2.6e-21)
          Length = 198

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/29 (34%), Positives = 21/29 (72%)
 Frame = +2

Query: 368 ITPQVQQWFRAVDKDQSGFITSTELRSAL 454
           +T ++++ F+ +D+D SG+I   E+ +AL
Sbjct: 66  VTLRLEKIFQEIDEDNSGYIDHNEISNAL 94


>SB_20632| Best HMM Match : Cu_bind_like (HMM E-Value=0.51)
          Length = 388

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +2

Query: 323 EIGHGPYPSIGVGGTITPQVQQWFRA----VDKDQSGFITSTELRSAL 454
           E GHG  P  GVGG       +  R+    +D   S F+ +TE +S++
Sbjct: 176 EAGHGKGPCDGVGGAAKRMADEAVRSGKVVIDDAHSFFVWATEYQSSV 223


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,168,761
Number of Sequences: 59808
Number of extensions: 427461
Number of successful extensions: 1112
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)