Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0676
(691 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10) 31 0.67
SB_4293| Best HMM Match : TFIID-18kDa (HMM E-Value=0) 30 1.5
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_50624| Best HMM Match : F5_F8_type_C (HMM E-Value=6e-10) 29 4.7
SB_33032| Best HMM Match : Prothymosin (HMM E-Value=0.78) 29 4.7
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_39943| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-07) 28 8.2
>SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10)
Length = 1163
Score = 31.5 bits (68), Expect = 0.67
Identities = 21/98 (21%), Positives = 41/98 (41%)
Frame = -3
Query: 578 HRILSDSLHQLRLLVLSHQYVFSFVHCRILLVF*YNIRVYSFG*CCDVYL*FVVDLIQFL 399
H S H +++H Y FS + F + F Y ++ F
Sbjct: 981 HFFFSIITHHFFFSIITHHYFFSIITHHFF--FSIITHHFFFSIITHHYFFSIITHHYFF 1038
Query: 398 LVIVQTF*FYSIVTHCVYYVVVSDCFTSSQVRIKYSFL 285
++I + F+SI+TH ++ +++D + S + Y F+
Sbjct: 1039 VIITHHY-FFSIITHHFFFSIITDHYFFSIITHHYFFV 1075
Score = 29.5 bits (63), Expect = 2.7
Identities = 28/119 (23%), Positives = 49/119 (41%)
Frame = -3
Query: 644 LHTFKDMTLLIPKLALPLSNRSHRILSDSLHQLRLLVLSHQYVFSFVHCRILLVF*YNIR 465
L T +LLI + +++ H S H +++H Y FS + F
Sbjct: 889 LITTSSQSLLITTSSQVITH--HDFFSIITHHDFFSIITHHYFFSIITDHYF--FSIITH 944
Query: 464 VYSFG*CCDVYL*FVVDLIQFLLVIVQTF*FYSIVTHCVYYVVVSDCFTSSQVRIKYSF 288
Y F Y+ ++ F +I F F+SI+TH ++ +++ F S + Y F
Sbjct: 945 HYFFVIITHHYIFSIITHHYFFSIITHHF-FFSIITHHFFFSIITHHFFFSIITHHYFF 1002
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/83 (22%), Positives = 35/83 (42%)
Frame = -3
Query: 578 HRILSDSLHQLRLLVLSHQYVFSFVHCRILLVF*YNIRVYSFG*CCDVYL*FVVDLIQFL 399
H S H ++++H Y FS + F Y F Y FV+ ++
Sbjct: 1026 HYFFSIITHHYFFVIITHHYFFSIITHHFF--FSIITDHYFFSIITHHYF-FVIITHHYI 1082
Query: 398 LVIVQTF*FYSIVTHCVYYVVVS 330
I+ F+SI+TH ++ +++
Sbjct: 1083 FPIITHHDFFSIITHHYFFSIIT 1105
>SB_4293| Best HMM Match : TFIID-18kDa (HMM E-Value=0)
Length = 160
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +1
Query: 172 FQKEISNMMHGFGDNPNPNAATVLLVEKL 258
F KE+ MM+GFGD+ P +V L+E L
Sbjct: 30 FHKELRCMMYGFGDDQCPYTESVDLLEDL 58
>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6863
Score = 29.1 bits (62), Expect = 3.6
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 8/73 (10%)
Frame = +2
Query: 473 YTRRREGSDNEQKRTHIDVI---KLIDEADEVSQIKFDAIDY--LREVRASELT--ESCL 631
+ +RR+ ++ E+ + ++I KLI++ DE+S+ +DY L E ++ +T ES
Sbjct: 3817 HIQRRKSAELEKSQLEEEIISCKKLIEQVDEISERDIKTMDYTLLNEFKSESVTALESSE 3876
Query: 632 *KYGA-YHKLDGS 667
HK+DG+
Sbjct: 3877 NAVATLMHKIDGT 3889
>SB_50624| Best HMM Match : F5_F8_type_C (HMM E-Value=6e-10)
Length = 353
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = -3
Query: 683 HGTXKN---YHLAYDRLHTFKDMTLLIPKLALPLSNRSHRILSDSLH 552
HGT K + + Y FK+ TL + + L N+S ++ D LH
Sbjct: 20 HGTGKGQECFVICYVISQAFKEWTLCFEAMEMDLENKSKGLMPDYLH 66
>SB_33032| Best HMM Match : Prothymosin (HMM E-Value=0.78)
Length = 508
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Frame = -2
Query: 228 VRVRVISKSVHHVRYFFLKVR--PFSTC-FHSIVSHFVSNSQ 112
VR+ +I++ +HVR F K PF+TC F+ S+F++ +
Sbjct: 161 VRIAIIAEKDYHVRTCFDKKSDFPFTTCVFYHPASYFITGDK 202
>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5834
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 220 SGYLQIRASCSIFLFESSSLLHMFP*YSKSFCLQFSG 110
S Y ++ A S+F+F SS+ + +CLQF+G
Sbjct: 1499 SEYWRVSAENSMFIFGSSAFHERLSITTMGYCLQFNG 1535
>SB_39943| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-07)
Length = 411
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/61 (22%), Positives = 29/61 (47%)
Frame = -3
Query: 413 LIQFLLVIVQTF*FYSIVTHCVYYVVVSDCFTSSQVRIKYSFL*DTPKLLQNNFSTKSTV 234
L L ++++F FY I V V+ C+ S +++++ D + +NN T+
Sbjct: 127 LASLFLRVLKSFNFYRIPVLTVCSAVIIICYVSIWIKMRFGKTFDNERASRNNAKLAKTL 186
Query: 233 A 231
+
Sbjct: 187 S 187
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,772,628
Number of Sequences: 59808
Number of extensions: 347729
Number of successful extensions: 866
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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