Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0675
         (675 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g48120.1 68418.m05944 expressed protein low similarity to MMS...    30   1.6  
At4g19960.1 68417.m02923 potassium transporter family protein si...    27   8.7  

>At5g48120.1 68418.m05944 expressed protein low similarity to MMS19
           [Mus musculus] GI:14029390
          Length = 1152

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 241 FHANSSNVNNYYVMTPCKSENTFYTIDINCMIKNKCI 351
           F+  S  V+N+Y+ T C+    F +ID NC    KC+
Sbjct: 644 FYIESFLVSNFYLETTCQVNGNFESID-NCSQLLKCL 679


>At4g19960.1 68417.m02923 potassium transporter family protein
           similar to potassium transporter [Arabidopsis thaliana]
           gi|2654088|gb|AAB87687; KUP/HAK/KT Transporter family
           member, PMID:11500563; contains Pfam profile PF02705: K+
           potassium transporter
          Length = 842

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +2

Query: 8   CMPGASCTHILNKILNVTHCPNTTIIIMIG 97
           C P     H   K L   +CP+   I+M+G
Sbjct: 424 CFPRVKIVHTSKKFLGQIYCPDINWILMLG 453


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,136,352
Number of Sequences: 28952
Number of extensions: 241582
Number of successful extensions: 431
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)