Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0672
         (620 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67430.1 68414.m07675 60S ribosomal protein L17 (RPL17B) simi...   114   5e-26
At1g27400.1 68414.m03340 60S ribosomal protein L17 (RPL17A) simi...   113   9e-26
At5g61490.1 68418.m07715 hypothetical protein                          28   5.7  
At3g01320.1 68416.m00045 paired amphipathic helix repeat-contain...    27   7.6  
At2g15270.1 68415.m01741 expressed protein                             27   7.6  

>At1g67430.1 68414.m07675 60S ribosomal protein L17 (RPL17B) similar
           to ribosomal protein GI:19101 from [Hordeum vulgare]
          Length = 175

 Score =  114 bits (274), Expect = 5e-26
 Identities = 56/85 (65%), Positives = 65/85 (76%), Gaps = 1/85 (1%)
 Frame = +1

Query: 1   MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAXRKMPLRRAVRYLKNVIEKKECIPF 180
           M +YS+EPDN  KSCKARGS+LRVHFKNT ETA A RK+PL +A RYL++VI  K+ IPF
Sbjct: 1   MVKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPF 60

Query: 181 RRFNGGVGRCAQAK-QFGTTQGRWP 252
            RF  GVGR AQAK +    QGRWP
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWP 85



 Score =  114 bits (274), Expect = 5e-26
 Identities = 58/92 (63%), Positives = 69/92 (75%), Gaps = 1/92 (1%)
 Frame = +3

Query: 240 GSLAQKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYM 419
           G    KSA+F+L LL+NAESNA+ K LDVD L I HIQVN+A   RRRTYRAHGRINPYM
Sbjct: 82  GRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYM 141

Query: 420 SSPCHIEVCLSEREDAVARVAPTD-DAPAKKS 512
           S+PCHIE+ LSE+E+ V +   T   A +KKS
Sbjct: 142 SNPCHIELILSEKEEPVKKEPETQLAAKSKKS 173


>At1g27400.1 68414.m03340 60S ribosomal protein L17 (RPL17A) similar
           to GB:P51413 from [Arabidopsis thaliana]; similar to
           ESTs gb|L33542 and gb|AA660016
          Length = 176

 Score =  113 bits (272), Expect = 9e-26
 Identities = 55/85 (64%), Positives = 65/85 (76%), Gaps = 1/85 (1%)
 Frame = +1

Query: 1   MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAXRKMPLRRAVRYLKNVIEKKECIPF 180
           M +YS+EPDN  KSCKARG++LRVHFKNT ETA A RK+PL +A RYL++VI  K+ IPF
Sbjct: 1   MVKYSQEPDNITKSCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPF 60

Query: 181 RRFNGGVGRCAQAK-QFGTTQGRWP 252
            RF  GVGR AQAK +    QGRWP
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWP 85



 Score =  113 bits (272), Expect = 9e-26
 Identities = 56/90 (62%), Positives = 66/90 (73%)
 Frame = +3

Query: 240 GSLAQKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYM 419
           G    KSA+F+L LL+NAESNA+ K LDVD L I HIQVN+A   RRRTYRAHGRINPYM
Sbjct: 82  GRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYM 141

Query: 420 SSPCHIEVCLSEREDAVARVAPTDDAPAKK 509
           S+PCHIE+ LSE+E+ V +   T  A   K
Sbjct: 142 SNPCHIELILSEKEEPVKKEPETQLAAKSK 171


>At5g61490.1 68418.m07715 hypothetical protein
          Length = 260

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +3

Query: 180 PSLQRRRWSLCSSKAVWHNTGSLAQKSAEFLLQLLRNAESNADN 311
           PS+QR   SL S KAVW      A  + E + +L+ NAE + ++
Sbjct: 143 PSVQRMVMSLTSDKAVWD-----AVMNNEVVRELISNAERSEED 181


>At3g01320.1 68416.m00045 paired amphipathic helix repeat-containing
            protein low similarity to transcription co-repressor Sin3
            [Xenopus laevis] GI:4960210; contains Pfam profile
            PF02671: Paired amphipathic helix repeat
          Length = 1378

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +1

Query: 13   SREPDNPAKSCKARGSNLRVHFKNTYETAMAXRKMPLRRAVRYLKNVIEKKE 168
            SR+P     S       + VH +N Y   +    +P R +++ + N+IEK E
Sbjct: 1222 SRKPGRVIDSVYYENVRVLVHEENIYR--LECSSLPSRLSIQLMDNIIEKPE 1271


>At2g15270.1 68415.m01741 expressed protein
          Length = 194

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +2

Query: 500 SEEKLSKKKLARQKEKMMRE 559
           +EEK SKK+L RQK+K  ++
Sbjct: 123 AEEKTSKKRLKRQKKKQKKQ 142


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,808,380
Number of Sequences: 28952
Number of extensions: 256927
Number of successful extensions: 732
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)