Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0670
(765 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46754| Best HMM Match : zf-C2H2 (HMM E-Value=1.5e-29) 31 0.77
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35) 29 3.1
SB_28410| Best HMM Match : zf-CCCH (HMM E-Value=7.9e-05) 29 3.1
SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045) 29 4.1
SB_14427| Best HMM Match : Cadherin (HMM E-Value=0) 29 5.4
SB_1745| Best HMM Match : LexA_DNA_bind (HMM E-Value=1.9) 29 5.4
SB_59437| Best HMM Match : AAA (HMM E-Value=7.4e-08) 28 7.2
SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_13913| Best HMM Match : WH2 (HMM E-Value=8.8e-05) 28 9.5
SB_37029| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45) 28 9.5
SB_11693| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_46754| Best HMM Match : zf-C2H2 (HMM E-Value=1.5e-29)
Length = 487
Score = 31.5 bits (68), Expect = 0.77
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Frame = +2
Query: 293 DGPELDSE---SKKAASVTPKHTPVKRMSLPSPGSTPFPNKSSQKERLLNITRSIEKSRR 463
DGP D+ SKKA+S +PK T VK S+ S P +K S + + +E++
Sbjct: 288 DGPLSDASGKSSKKASSKSPKVTKVKESSITSQ-KAPKSSKQSSSKSTKGTKKRVEEASS 346
Query: 464 SS 469
+S
Sbjct: 347 TS 348
>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
Length = 2049
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 260 TPLKREGTFTKDGPELDSESKKAASVTPKHTPVKRMS 370
T REGT P L +K + S +P PVKR++
Sbjct: 1937 TSASREGTRKAKRPRLTDSAKSSRSASPATKPVKRVA 1973
>SB_28410| Best HMM Match : zf-CCCH (HMM E-Value=7.9e-05)
Length = 905
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 499 SNVCSPVDNPTIFSQQRKKVIKSNLKGIKQE 591
++ PV N + QQ K++ SN++G+KQE
Sbjct: 627 TSTVKPVVNSKLQQQQTLKLLSSNIEGLKQE 657
>SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)
Length = 2506
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 374 PSPGSTPFPNKSSQKERLLNITRSIEKSRRS 466
PSP TP P +++ + LL +T S EK + +
Sbjct: 2382 PSPPDTPKPKRTTHRRSLLKMTSSDEKVKET 2412
>SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2325
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +2
Query: 224 YS*RYLELTGTVTPLKREGTFTKDGPELDSESKKAASVTPKHTPVK 361
+S ++ +GT +P EG F K LD E++ + SVT T K
Sbjct: 1513 FSYTVIKQSGTGSPFSTEGDFLKTVRSLDYETRNSWSVTVTSTDNK 1558
>SB_1745| Best HMM Match : LexA_DNA_bind (HMM E-Value=1.9)
Length = 398
Score = 28.7 bits (61), Expect = 5.4
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Frame = +2
Query: 314 ESKKAASVTPKHTPVKRMSLPSPGSTPFPNKSSQKERLLNITRS-IEKSRRSSLVEVVPR 490
++K+A +H +R L FP+K QKE L ++ I+ R L
Sbjct: 97 QAKEAQEDKERHVTEERKELLLQEIRRFPSKKKQKELLEQERQNRIKMYRERILTNNKSD 156
Query: 491 TTKVMFAVQLITQLFSVSREKRLLSQT 571
T V L+ + ++K+LL +T
Sbjct: 157 ETLVQVQEDLLKLFGKIKKDKKLLKET 183
>SB_59437| Best HMM Match : AAA (HMM E-Value=7.4e-08)
Length = 568
Score = 28.3 bits (60), Expect = 7.2
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 1/89 (1%)
Frame = +2
Query: 299 PELDSESKKAASVTPKHT-PVKRMSLPSPGSTPFPNKSSQKERLLNITRSIEKSRRSSLV 475
P + S VTPK T PVK + P P K Q+E + S+EK ++S
Sbjct: 27 PTKSTPSPIKKQVTPKKTTPVKALKEPESKKARTPEKIKQEETIAT-PSSLEK-KKSGYR 84
Query: 476 EVVPRTTKVMFAVQLITQLFSVSREKRLL 562
+ R + I Q+ + K LL
Sbjct: 85 SFMSREGPKALGSKEIPQIVDICPVKELL 113
>SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1417
Score = 28.3 bits (60), Expect = 7.2
Identities = 24/98 (24%), Positives = 45/98 (45%)
Frame = +2
Query: 254 TVTPLKREGTFTKDGPELDSESKKAASVTPKHTPVKRMSLPSPGSTPFPNKSSQKERLLN 433
+ TP+K + T P + S +P TP+K PSP +T P + +R+ +
Sbjct: 1320 STTPIKPSPSTTPIKPSPSTTSTTPIKPSPSTTPIK----PSPSTT--PGVHDRGDRVQH 1373
Query: 434 ITRSIEKSRRSSLVEVVPRTTKVMFAVQLITQLFSVSR 547
R ++S ++++ V V+ + +I L+S R
Sbjct: 1374 QGR--DESGMAAIISGVVAAIVVLLVLAIIAALWSRRR 1409
>SB_13913| Best HMM Match : WH2 (HMM E-Value=8.8e-05)
Length = 493
Score = 27.9 bits (59), Expect = 9.5
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Frame = +2
Query: 290 KDGPELDSESKKAASVTPKHTPVKRMSLPSPGSTPFPNKSSQKERLLNITRSIEKSRRSS 469
K+ PE ++ K+ TP+ + +R+S P KSS+KE+L + R + R +
Sbjct: 244 KELPEEEATPKEVKE-TPRRSS-RRLSAPQNEEKVETPKSSKKEKLSELKRRLATPMREA 301
Query: 470 L-VEVVPRTTKVMFAVQLITQLFSVSREKRLLSQT 571
+ + + TK +L T L V + K L +T
Sbjct: 302 IEAGIALKQTK----KKLATPLREVIKSKPKLKET 332
>SB_37029| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45)
Length = 1102
Score = 27.9 bits (59), Expect = 9.5
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 6/96 (6%)
Frame = +2
Query: 254 TVTPLKREGTFTKDGPELDSESK--KAASVTPKHTPVKRMSLPSPGSTPFPNKSSQKERL 427
TV P + T+ G E + + +++ PK+ P +R++ P G P K +
Sbjct: 519 TVKPFRAPSTY---GTEYSGRANLLRLSTIQPKYRPCRRLTYPGGGRRSVPTKDLVR-IY 574
Query: 428 LNITRSI--EKSRR--SSLVEVVPRTTKVMFAVQLI 523
+++ RS+ E R SL+ VP V + LI
Sbjct: 575 ISLIRSVPTEDLVRIYISLIRSVPTEDLVRIYISLI 610
>SB_11693| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 201
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +1
Query: 514 PVDNPTIFSQQRKKVIKSNLKGIKQEFCC*RERAEIHDLPPASVRTLQSDA 666
P NP + S +R I+ ++GI +EF ++ +LP ++ L ++A
Sbjct: 61 PDGNPRLLSAERGMTIRDLVQGIAKEFNL-DNNYQVRELPSKNILNLDANA 110
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,151,930
Number of Sequences: 59808
Number of extensions: 335414
Number of successful extensions: 1101
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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