Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0670
(765 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g62330.1 68416.m07002 zinc knuckle (CCHC-type) family protein... 31 0.64
At1g17440.2 68414.m02133 transcription initiation factor IID (TF... 31 0.64
At1g17440.1 68414.m02132 transcription initiation factor IID (TF... 31 0.64
At1g26150.1 68414.m03192 protein kinase family protein similar t... 30 1.9
At4g29440.1 68417.m04203 expressed protein contains Pfam profil... 29 2.6
At4g37890.1 68417.m05358 zinc finger (C3HC4-type RING finger) fa... 29 3.4
At5g55660.1 68418.m06940 expressed protein similar to unknown pr... 28 5.9
At3g09000.1 68416.m01053 proline-rich family protein 28 5.9
At2g38160.1 68415.m04684 expressed protein 28 5.9
At1g72160.1 68414.m08343 SEC14 cytosolic factor family protein /... 28 5.9
>At3g62330.1 68416.m07002 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 479
Score = 31.5 bits (68), Expect = 0.64
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Frame = +2
Query: 311 SESKKAASVTP---KHTPVKRMSLPSPGSTPFPNKSSQKERLLNITRSIEKSRRSSLVEV 481
S S + SV P +++ +R LPS GS+ FP +S ++++ ++ R E++R
Sbjct: 195 SRSPRRTSVGPSRARNSEPQRQQLPSHGSSSFPERSGRQDKFVD-NRFREETRVRENQRN 253
Query: 482 VPR 490
VPR
Sbjct: 254 VPR 256
>At1g17440.2 68414.m02133 transcription initiation factor IID
(TFIID) subunit A family protein similar to SP|Q16514
Transcription initiation factor TFIID 20/15 kDa subunits
(TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
profile PF03847: Transcription initiation factor TFIID
subunit A
Length = 683
Score = 31.5 bits (68), Expect = 0.64
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +2
Query: 311 SESKKAASVTPKHTPVKRMSLPSPGS-TPFPNKSSQKERLLNITRSIEKSRRSSLVEVVP 487
+E ++S++PK PSP S TP P+ SSQ+++L+ T I S S+ +
Sbjct: 2 AEPIPSSSLSPKSLQSPNPMEPSPASSTPLPSSSSQQQQLM--TAPISNSVNSAASPAMT 59
Query: 488 RTTKVMFAVQ 517
TT +Q
Sbjct: 60 VTTTEGIVIQ 69
>At1g17440.1 68414.m02132 transcription initiation factor IID
(TFIID) subunit A family protein similar to SP|Q16514
Transcription initiation factor TFIID 20/15 kDa subunits
(TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
profile PF03847: Transcription initiation factor TFIID
subunit A
Length = 683
Score = 31.5 bits (68), Expect = 0.64
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +2
Query: 311 SESKKAASVTPKHTPVKRMSLPSPGS-TPFPNKSSQKERLLNITRSIEKSRRSSLVEVVP 487
+E ++S++PK PSP S TP P+ SSQ+++L+ T I S S+ +
Sbjct: 2 AEPIPSSSLSPKSLQSPNPMEPSPASSTPLPSSSSQQQQLM--TAPISNSVNSAASPAMT 59
Query: 488 RTTKVMFAVQ 517
TT +Q
Sbjct: 60 VTTTEGIVIQ 69
>At1g26150.1 68414.m03192 protein kinase family protein similar to
Pto kinase interactor 1 GI:3668069 from [Lycopersicon
esculentum]
Length = 760
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +2
Query: 299 PELDSESKKAASVTPKHTPVKRMSLPSPGSTPFPNKSSQKERLL 430
P S+SK+ +P P + + P P P P+ SS LL
Sbjct: 243 PPSPSDSKRPVHPSPPSPPEETLPPPKPSPDPLPSNSSSPPTLL 286
>At4g29440.1 68417.m04203 expressed protein contains Pfam profile:
PF03398 eukaryotic protein of unknown function, DUF292
Length = 1090
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +2
Query: 275 EGTFTKDGPELDSESKKAASVTPKHTPVKR-MSLPSPGSTPFPNKSSQKERLLNITRSIE 451
+G +K E D+E+ P + ++ +LPS GS+P +K+S K + ++
Sbjct: 659 QGDDSKTQEESDAETPTGLKFGPLASGLENETTLPSYGSSPPRDKTSSKSIKEYLPTEVD 718
Query: 452 KSRRSSL 472
SR SSL
Sbjct: 719 PSRSSSL 725
>At4g37890.1 68417.m05358 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 739
Score = 29.1 bits (62), Expect = 3.4
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Frame = +2
Query: 299 PELDSESKKAASVTPKHTPVKRMSLPSPGSTPFPNKSSQKERLLNITRSIEKSR---RSS 469
P+L ++ + T +P+ +S+ S STP KS LL K R R++
Sbjct: 82 PKLQCDTSGDVTPTRNRSPLSFLSVSSSSSTPSSPKSPASFSLLKSKLCFTKVRILNRNN 141
Query: 470 LVEVVPRTTKVMFAVQLITQLFSVSREK 553
V + +K+ F ++L + S+S K
Sbjct: 142 QVNIFKNNSKLTF-LRLCYEQSSISSSK 168
>At5g55660.1 68418.m06940 expressed protein similar to unknown
protein (pir||T08929)
Length = 778
Score = 28.3 bits (60), Expect = 5.9
Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 1/114 (0%)
Frame = +2
Query: 290 KDGPELDSESKKAASVTPKHTPVKRMSLPSPGSTPFPNKSSQKERLLNITRSIEKSRRSS 469
K G S+ K++A + K+ ++P+ S P K++QK +S + S S
Sbjct: 588 KRGSRTSSDKKESAGKSRS----KKTAVPTKSSPP--KKATQKRSAGKRKKSDDDSDTSP 641
Query: 470 LVEVVPRTTKVMFAVQLITQLFSVSREKRLLSQT-*RGSNKSFVVEENELKFTI 628
+ T+ Q L SVS+EK ++ + +G +K+ + ELK I
Sbjct: 642 KASSKRKKTEKPAKEQAAAPLKSVSKEKPVIGKRGGKGKDKNKEPSDEELKTAI 695
>At3g09000.1 68416.m01053 proline-rich family protein
Length = 541
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +2
Query: 260 TPLKREGTFTKDGPELDSESKKAASVTPKHTPVKRMSLPSPGSTPFPNKSSQK 418
TP +R T T GP + S + +P T PS G++P P +S +
Sbjct: 243 TPTRRPSTPT--GPSIVSSKAPSRGTSPSPTVNSLSKAPSRGTSPSPTLNSSR 293
>At2g38160.1 68415.m04684 expressed protein
Length = 299
Score = 28.3 bits (60), Expect = 5.9
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Frame = +2
Query: 263 PLKREGTFTKDGPELDS--ESKKAASVTP------KHTPVKRMSLPSPGSTPFPNKSSQK 418
PL R +K P S ++ AA V P + TP R +LPS T S+QK
Sbjct: 113 PLTRSVKVSKPTPRTVSSKQANTAAEVKPSIKPSRQATPTSRATLPSTRLT----NSAQK 168
Query: 419 ERLLNITRSIEKSRRSSLVEVVPRTTKV 502
+IT SI+ + R+S PR++ V
Sbjct: 169 SNSESITTSIKSNTRAS---AFPRSSSV 193
>At1g72160.1 68414.m08343 SEC14 cytosolic factor family protein /
phosphoglyceride transfer family protein similar to
GI:807956 from [Saccharomyces cerevisiae]similar to
polyphosphoinositide binding protein Ssh2p (GI:2739046)
{Glycine max}; contains Pfam PF00650 : CRAL/TRIO domain;
contains Pfam PF03765 : CRAL/TRIO, N-terminus
Length = 490
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +2
Query: 350 TPVKRMSLPSPGSTPFPNKSSQKERLLNITRSIEKSRRSSLVEVVPRTTK 499
T V LPSP TP S ++ L T ++EK ++ E TTK
Sbjct: 9 TLVTPEKLPSPSLTPSEVSESTQDALPTETETLEKVTETNPPETADTTTK 58
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,597,624
Number of Sequences: 28952
Number of extensions: 241319
Number of successful extensions: 818
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -