Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0669
(489 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g08410.1 68418.m00990 ferredoxin-thioredoxin reductase, putat... 31 0.32
At3g53350.1 68416.m05886 myosin heavy chain-related low similari... 31 0.55
At5g52280.1 68418.m06488 protein transport protein-related low s... 30 0.96
At3g10180.1 68416.m01219 kinesin motor protein-related similar t... 30 0.96
At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein heli... 30 0.96
At3g53350.3 68416.m05888 myosin heavy chain-related low similari... 29 1.3
At3g53350.2 68416.m05887 myosin heavy chain-related low similari... 29 1.3
At1g20410.1 68414.m02545 expressed protein 29 1.7
At1g04600.1 68414.m00454 myosin, putative similar to myosin (GI:... 29 1.7
At5g32440.1 68418.m03825 expressed protein 28 2.9
At2g24420.2 68415.m02918 DNA repair ATPase-related contains 2 tr... 28 2.9
At2g24420.1 68415.m02917 DNA repair ATPase-related contains 2 tr... 28 2.9
At1g67230.1 68414.m07652 expressed protein 28 2.9
At5g15580.1 68418.m01824 expressed protein unknown protein F14P3... 28 3.9
At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-rel... 28 3.9
At3g46840.1 68416.m05084 subtilase family protein contains simil... 28 3.9
At3g44050.1 68416.m04718 kinesin motor protein-related KLP2 prot... 28 3.9
At2g34930.1 68415.m04288 disease resistance family protein conta... 28 3.9
At1g20530.1 68414.m02558 hypothetical protein 28 3.9
At1g12460.1 68414.m01440 leucine-rich repeat transmembrane prote... 28 3.9
At4g01290.1 68417.m00170 expressed protein 27 5.1
At3g29380.1 68416.m03691 transcription factor IIB (TFIIB) family... 27 5.1
At1g64320.1 68414.m07289 myosin heavy chain-related similar to m... 27 5.1
At5g44180.1 68418.m05406 homeobox transcription factor, putative... 27 6.8
At3g46850.1 68416.m05085 subtilase family protein contains simil... 27 6.8
At3g13270.1 68416.m01670 hypothetical protein contains similarit... 27 6.8
At2g28620.1 68415.m03479 kinesin motor protein-related 27 6.8
At1g56080.1 68414.m06439 expressed protein 27 6.8
At3g19050.1 68416.m02420 kinesin motor protein-related contains ... 27 9.0
>At5g08410.1 68418.m00990 ferredoxin-thioredoxin reductase, putative
similar to ferredoxin-thioredoxin reductase, variable
chain (FTR-V, Ferredoxin- thioredoxin reductase subunit
A, FTR-A) [Zea mays] SWISS-PROT:P80680
Length = 184
Score = 31.5 bits (68), Expect = 0.32
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -1
Query: 444 VSSNSFLASWSSCSYIPLMLETSRVTTSCVVCISRRNPEFSL 319
+S + S SS ++P+ L TS + C ISR+NP+ ++
Sbjct: 29 LSGRKSINSSSSSIFVPISLSTSYGRSKCAFSISRKNPKSTI 70
>At3g53350.1 68416.m05886 myosin heavy chain-related low similarity
to filamin-interacting protein S-FILIP [Rattus
norvegicus] GI:21392397, nonmuscle heavy chain myosin
II-A [Mus musculus] GI:17978023
Length = 396
Score = 30.7 bits (66), Expect = 0.55
Identities = 22/80 (27%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Frame = +2
Query: 251 REDALQNLNDRLAAYIDKVRQLESENSGLRREIQTTQEVVTREVSNIKGMYEHELQDAR- 427
R A LN+ ++ +LES S L+ E++ +E + R + +K + E +DA+
Sbjct: 55 RRSARIPLNEIQKKRTGRIPELESTISQLQEELKKAKEELNRSEA-LKREAQEEAEDAKH 113
Query: 428 KLLDDTSREKAKLEIDLKRL 487
+L+D + E +++E +L++L
Sbjct: 114 QLMDINASEDSRIE-ELRKL 132
Score = 28.3 bits (60), Expect = 2.9
Identities = 17/83 (20%), Positives = 37/83 (44%)
Frame = +2
Query: 203 RSSKQST*SYQAKPFAREDALQNLNDRLAAYIDKVRQLESENSGLRREIQTTQEVVTREV 382
RS++ Q K R L++ +L + K ++ + + L+RE Q E ++
Sbjct: 56 RSARIPLNEIQKKRTGRIPELESTISQLQEELKKAKEELNRSEALKREAQEEAEDAKHQL 115
Query: 383 SNIKGMYEHELQDARKLLDDTSR 451
+I + +++ RKL + +
Sbjct: 116 MDINASEDSRIEELRKLSQERDK 138
>At5g52280.1 68418.m06488 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 853
Score = 29.9 bits (64), Expect = 0.96
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Frame = +2
Query: 257 DALQNLNDRLAAYIDKVRQLESENSGLRRE-IQTTQEV--VTREVSNIKGMYEHELQDAR 427
D ++ L L A + E E LR++ I+ ++ + +++EVS +KG + +++
Sbjct: 264 DPIERLKMELEALRRQSELSELEKQSLRKQAIKESKRIQELSKEVSCLKGERDGAMEECE 323
Query: 428 KLLDDTSREKAKLEIDLK 481
KL SR++A E L+
Sbjct: 324 KLRLQNSRDEADAESRLR 341
>At3g10180.1 68416.m01219 kinesin motor protein-related similar to
centromere protein E GB:4502781 [Homo sapiens]
Length = 1348
Score = 29.9 bits (64), Expect = 0.96
Identities = 18/81 (22%), Positives = 42/81 (51%)
Frame = +2
Query: 245 FAREDALQNLNDRLAAYIDKVRQLESENSGLRREIQTTQEVVTREVSNIKGMYEHELQDA 424
F E + +L + LAA + + N GL EI E + + ++ + ++++ +
Sbjct: 911 FEMETTIASLEEELAAERGEKEEALCRNDGLGSEITDLTEKLEHSNTKLEHL-QNDVTEL 969
Query: 425 RKLLDDTSREKAKLEIDLKRL 487
+ L+ +S ++ +LE ++K+L
Sbjct: 970 KTRLEVSSSDQQQLETNVKQL 990
>At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein
helicase, putative similar to SP|O75643 U5 small nuclear
ribonucleoprotein 200 kDa helicase {Homo sapiens};
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF02889:
Sec63 domain
Length = 2171
Score = 29.9 bits (64), Expect = 0.96
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +2
Query: 257 DALQNLNDRLAAYIDKVRQLESENSGLRREIQTTQEVVT 373
+ + NL++RL Y VR+L + S REI+ TQ +VT
Sbjct: 574 EVVGNLSNRLKDYGVIVRELSGDQSLTGREIEETQIIVT 612
>At3g53350.3 68416.m05888 myosin heavy chain-related low similarity
to filamin-interacting protein S-FILIP [Rattus
norvegicus] GI:21392397, nonmuscle heavy chain myosin
II-A [Mus musculus] GI:17978023
Length = 394
Score = 29.5 bits (63), Expect = 1.3
Identities = 18/63 (28%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Frame = +2
Query: 302 KVRQLESENSGLRREIQTTQEVVTREVSNIKGMYEHELQDAR-KLLDDTSREKAKLEIDL 478
++ +LES S L+ E++ +E + R + +K + E +DA+ +L+D + E +++E +L
Sbjct: 70 RIPELESTISQLQEELKKAKEELNRSEA-LKREAQEEAEDAKHQLMDINASEDSRIE-EL 127
Query: 479 KRL 487
++L
Sbjct: 128 RKL 130
>At3g53350.2 68416.m05887 myosin heavy chain-related low similarity
to filamin-interacting protein S-FILIP [Rattus
norvegicus] GI:21392397, nonmuscle heavy chain myosin
II-A [Mus musculus] GI:17978023
Length = 394
Score = 29.5 bits (63), Expect = 1.3
Identities = 18/63 (28%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Frame = +2
Query: 302 KVRQLESENSGLRREIQTTQEVVTREVSNIKGMYEHELQDAR-KLLDDTSREKAKLEIDL 478
++ +LES S L+ E++ +E + R + +K + E +DA+ +L+D + E +++E +L
Sbjct: 70 RIPELESTISQLQEELKKAKEELNRSEA-LKREAQEEAEDAKHQLMDINASEDSRIE-EL 127
Query: 479 KRL 487
++L
Sbjct: 128 RKL 130
>At1g20410.1 68414.m02545 expressed protein
Length = 504
Score = 29.1 bits (62), Expect = 1.7
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = -1
Query: 483 LFKSISSLAFSRDVSS--NSFLASWSSCSYIPLMLETSRVTTSCVVCI 346
+F+ +S AF D+SS S L SW S +T C+VC+
Sbjct: 55 IFRLVSVEAFDSDISSVSTSTLRSWLKSGDDETSASESSCSTICIVCL 102
>At1g04600.1 68414.m00454 myosin, putative similar to myosin
(GI:499047) [Arabidopsis thaliana]
Length = 1730
Score = 29.1 bits (62), Expect = 1.7
Identities = 16/60 (26%), Positives = 35/60 (58%)
Frame = +2
Query: 302 KVRQLESENSGLRREIQTTQEVVTREVSNIKGMYEHELQDARKLLDDTSREKAKLEIDLK 481
++ L+S + ++ +++ TQE ++E+S+++ + L D + L DT K+K DL+
Sbjct: 921 EIEALQSVLTDIKLQLRDTQETKSKEISDLQSV----LTDIKLQLRDTQETKSKEISDLQ 976
>At5g32440.1 68418.m03825 expressed protein
Length = 264
Score = 28.3 bits (60), Expect = 2.9
Identities = 21/73 (28%), Positives = 34/73 (46%)
Frame = +2
Query: 257 DALQNLNDRLAAYIDKVRQLESENSGLRREIQTTQEVVTREVSNIKGMYEHELQDARKLL 436
DA+QNL ++ + ENS L+R + TQ+ RE + ELQ R+L+
Sbjct: 171 DAMQNLQQENMMLKQQLEAIVQENSLLKRAV-VTQQKRQRESED----QSQELQHLRQLV 225
Query: 437 DDTSREKAKLEID 475
+ LE++
Sbjct: 226 TQYQEQLRTLEVN 238
>At2g24420.2 68415.m02918 DNA repair ATPase-related contains 2
transmembrane domains; similar to DNA double-strand
break repair rad50 ATPase. (Swiss-Prot:O33600)
[Sulfolobus acidocaldarius]
Length = 440
Score = 28.3 bits (60), Expect = 2.9
Identities = 18/73 (24%), Positives = 34/73 (46%)
Frame = +2
Query: 251 REDALQNLNDRLAAYIDKVRQLESENSGLRREIQTTQEVVTREVSNIKGMYEHELQDARK 430
RE+ + L DKV LE+E S LR++ + + + E +++ +K
Sbjct: 70 REELVTEKEKLLQERQDKVASLETEVSSLRKKGSSDSVELLSKAQARATELEKQVEVLKK 129
Query: 431 LLDDTSREKAKLE 469
L+ ++EK +E
Sbjct: 130 FLEQKNKEKELIE 142
>At2g24420.1 68415.m02917 DNA repair ATPase-related contains 2
transmembrane domains; similar to DNA double-strand
break repair rad50 ATPase. (Swiss-Prot:O33600)
[Sulfolobus acidocaldarius]
Length = 440
Score = 28.3 bits (60), Expect = 2.9
Identities = 18/73 (24%), Positives = 34/73 (46%)
Frame = +2
Query: 251 REDALQNLNDRLAAYIDKVRQLESENSGLRREIQTTQEVVTREVSNIKGMYEHELQDARK 430
RE+ + L DKV LE+E S LR++ + + + E +++ +K
Sbjct: 70 REELVTEKEKLLQERQDKVASLETEVSSLRKKGSSDSVELLSKAQARATELEKQVEVLKK 129
Query: 431 LLDDTSREKAKLE 469
L+ ++EK +E
Sbjct: 130 FLEQKNKEKELIE 142
>At1g67230.1 68414.m07652 expressed protein
Length = 1132
Score = 28.3 bits (60), Expect = 2.9
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = +2
Query: 308 RQLESENSGLRREIQTTQEVVTREVSNIKGMYEHELQDARKLLDDTSREKAKLEIDLKR 484
++ ESE S L +I+ + + ++ I E ELQ +KL ++ REK I+ R
Sbjct: 598 KKAESERSQLLHDIEMRKRKLESDMQTILEEKERELQAKKKLFEE-EREKELSNINYLR 655
>At5g15580.1 68418.m01824 expressed protein unknown protein F14P3.18
- Arabidopsis thaliana, EMBL:AC009755
Length = 927
Score = 27.9 bits (59), Expect = 3.9
Identities = 19/35 (54%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -1
Query: 453 SRDVSSNSFLASWSSCSYIPLMLETS-RVTTSCVV 352
S D SNSF ++ SSCS P L T R TTS VV
Sbjct: 229 SLDSRSNSFRSARSSCSPEPQELVTGHRRTTSSVV 263
>At4g02660.1 68417.m00361 WD-40 repeat family protein /
beige-related contains Pfam PF00400: WD domain, G-beta
repeat; similar to BEIGE (GI:3928547) [Rattus
norvegicus]; lysosomal trafficking regulator - Bos
taurus, EMBL: AF114785
Length = 3471
Score = 27.9 bits (59), Expect = 3.9
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +2
Query: 431 LLDDTSREKAKLEIDLKR 484
LL TSR+K KLE+D KR
Sbjct: 57 LLSPTSRDKLKLELDFKR 74
>At3g46840.1 68416.m05084 subtilase family protein contains
similarity to prepro-cucumisin GI:807698 from [Cucumis
melo];
Length = 738
Score = 27.9 bits (59), Expect = 3.9
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -1
Query: 462 LAFSRDVSSNSFLASWSSCSYIPLMLETSRVTTSCVVCISRRNPE 328
L + + SS+ AS CS P L++ RV V+C S +NP+
Sbjct: 365 LVYGKSASSSCGAASAGFCS--PGCLDSKRVKGKIVLCDSPQNPD 407
>At3g44050.1 68416.m04718 kinesin motor protein-related KLP2 protein,
Xenopus laevis, PIR:T30335
Length = 1229
Score = 27.9 bits (59), Expect = 3.9
Identities = 15/53 (28%), Positives = 30/53 (56%)
Frame = +2
Query: 329 SGLRREIQTTQEVVTREVSNIKGMYEHELQDARKLLDDTSREKAKLEIDLKRL 487
+G ++ +QE T+ S +K + +L RK +DD +++ KLE ++K +
Sbjct: 1053 TGKATDLLKSQEEKTKLQSEMK-LSREKLASVRKEVDDMTKKSLKLEKEIKTM 1104
>At2g34930.1 68415.m04288 disease resistance family protein contains
leucine rich-repeat domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Cf-2.1 [Lycopersicon
pimpinellifolium] gi|1184075|gb|AAC15779
Length = 905
Score = 27.9 bits (59), Expect = 3.9
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -3
Query: 235 LVGLSGLLGRPAELEGRLPTGVLDCSGLCSDD 140
L LS LL LEG++P + +CSGL + D
Sbjct: 662 LPSLSVLLLNQNSLEGKIPESLRNCSGLTNID 693
>At1g20530.1 68414.m02558 hypothetical protein
Length = 614
Score = 27.9 bits (59), Expect = 3.9
Identities = 15/69 (21%), Positives = 32/69 (46%)
Frame = +2
Query: 266 QNLNDRLAAYIDKVRQLESENSGLRREIQTTQEVVTREVSNIKGMYEHELQDARKLLDDT 445
+N+N + K+ LE E ++R+++T V N+K E + KL ++
Sbjct: 543 RNVNGSVKDIERKLMMLEKEEQKMQRKMKTVPSVALMGSLNLKSNMEQIFKSMEKLATNS 602
Query: 446 SREKAKLEI 472
+ +L++
Sbjct: 603 KQTYEELDL 611
>At1g12460.1 68414.m01440 leucine-rich repeat transmembrane protein
kinase, putative
Length = 882
Score = 27.9 bits (59), Expect = 3.9
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -3
Query: 238 CLVGLSGLLGRPAELEGRLPTGVLDCSGL 152
C L L EL GR+PTGV+ C L
Sbjct: 282 CSESLEFLDASSNELTGRIPTGVMGCKSL 310
>At4g01290.1 68417.m00170 expressed protein
Length = 991
Score = 27.5 bits (58), Expect = 5.1
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +2
Query: 230 YQAKPFAREDALQNLNDRLAAYIDKVRQLESENSGLRR 343
Y+A PF R DA + ND D + +E RR
Sbjct: 192 YKAPPFTRRDARDSFNDETFGSSDSTSEDRAEEERKRR 229
>At3g29380.1 68416.m03691 transcription factor IIB (TFIIB) family
protein contains Pfam profile: PF00382 transcription
factor TFIIB repeat
Length = 336
Score = 27.5 bits (58), Expect = 5.1
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +2
Query: 257 DALQNLNDRLAAYIDKVRQLESENSGLRREIQTTQEVVTREVSN-IKGMYEHELQ 418
D +N LAA I + + N REI EVV + N +K MY + L+
Sbjct: 252 DIRRNPKSVLAAIIFMISHISQTNRKPIREIGIVAEVVENTIKNSVKDMYPYALK 306
>At1g64320.1 68414.m07289 myosin heavy chain-related similar to
myosin heavy chain (GI:4249703) [Rana catesbeiana];
similar to smooth muscle myosin heavy chain SM2
(GI:2352945) [Homo sapiens]
Length = 476
Score = 27.5 bits (58), Expect = 5.1
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +2
Query: 299 DKVRQLESENSGLRREIQTTQEVVTREVSNIKGMYEHELQDARKLLDDTSREKAKL 466
+++ QL+ EN L R I + +K HE++DA K LD ++ KL
Sbjct: 149 EEIDQLKGENQMLHRRISELDSLHME----MKTKSAHEMEDASKKLDTEVSDQKKL 200
>At5g44180.1 68418.m05406 homeobox transcription factor, putative
similar to homeobox transcription factor Hox7/homeotic
protein Hox7 (GI:19486) {Lycopersicon peruvianum};
similar to GP|4165087| Williams-Beuren syndrome deletion
transcript 9 [Homo sapiens]; contains Pfam PF02791: DDT
domain and Pfam PF00046: Homeobox domain
Length = 1694
Score = 27.1 bits (57), Expect = 6.8
Identities = 18/72 (25%), Positives = 33/72 (45%)
Frame = +2
Query: 254 EDALQNLNDRLAAYIDKVRQLESENSGLRREIQTTQEVVTREVSNIKGMYEHELQDARKL 433
+DALQ R R++E+ +RRE++ + + I+ E + ++ RK
Sbjct: 319 DDALQLERHRKNEEARIAREVEAHEKRIRRELEKQDMLRRKREEQIRKEMERQDRERRKE 378
Query: 434 LDDTSREKAKLE 469
+ REK + E
Sbjct: 379 EERLLREKQREE 390
Score = 26.6 bits (56), Expect = 9.0
Identities = 17/81 (20%), Positives = 35/81 (43%)
Frame = +2
Query: 242 PFAREDALQNLNDRLAAYIDKVRQLESENSGLRREIQTTQEVVTREVSNIKGMYEHELQD 421
PF + + D + R ++E + + RE++ ++ + RE+ + +
Sbjct: 304 PFVKSEREVGNEDEDDDALQLERHRKNEEARIAREVEAHEKRIRRELEKQDMLRRKREEQ 363
Query: 422 ARKLLDDTSREKAKLEIDLKR 484
RK ++ RE+ K E L R
Sbjct: 364 IRKEMERQDRERRKEEERLLR 384
>At3g46850.1 68416.m05085 subtilase family protein contains
similarity to prepro-cucumisin GI:807698 from [Cucumis
melo];
Length = 736
Score = 27.1 bits (57), Expect = 6.8
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -1
Query: 462 LAFSRDVSSNSFLASWSSCSYIPLMLETSRVTTSCVVCISRRNP 331
L + + SS +S CS P L++ RV V+C ++RNP
Sbjct: 365 LVYGKSASSRCDASSAGFCS--PGCLDSKRVKGKIVLCDTQRNP 406
>At3g13270.1 68416.m01670 hypothetical protein contains similarity
to replication protein A1
Length = 570
Score = 27.1 bits (57), Expect = 6.8
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = -1
Query: 423 ASWSSCSYIPLMLETSRVTTSCVVCISRR 337
AS S IPLMLE S+ TT V +S+R
Sbjct: 441 ASIVSGDQIPLMLEYSQETTDTVTPVSKR 469
>At2g28620.1 68415.m03479 kinesin motor protein-related
Length = 1076
Score = 27.1 bits (57), Expect = 6.8
Identities = 20/64 (31%), Positives = 32/64 (50%)
Frame = +2
Query: 290 AYIDKVRQLESENSGLRREIQTTQEVVTREVSNIKGMYEHELQDARKLLDDTSREKAKLE 469
A DK+ Q+E E ++I QE+ E G+ E +L K L +T E+A L+
Sbjct: 447 AMADKIEQMEVEGEAKDKQIIDLQELYNSEQLVTAGLRE-KLDKTEKKLYET--EQALLD 503
Query: 470 IDLK 481
++ K
Sbjct: 504 LEEK 507
>At1g56080.1 68414.m06439 expressed protein
Length = 310
Score = 27.1 bits (57), Expect = 6.8
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Frame = +2
Query: 290 AYIDKVRQLESENSGLRREIQTTQEVVTR---EVSNIKGMYEHELQDARKLLDDT---SR 451
A +V LES+ SGLR+++ +V VS+ + +Y + ++D+ ++
Sbjct: 36 AIASRVSNLESQVSGLRQKLLEKDRLVHELEDRVSSFERLYHEADSSLKNVVDENMKLTQ 95
Query: 452 EKAKLEIDLKRL 487
E+ L I K+L
Sbjct: 96 ERDSLAITAKKL 107
>At3g19050.1 68416.m02420 kinesin motor protein-related contains
Pfam profile: PF00225 Kinesin motor domain; contains
non-consensus splice site (GC) at intron 12
Length = 2722
Score = 26.6 bits (56), Expect = 9.0
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +2
Query: 203 RSSKQST*SYQAKPFAREDALQNLNDRLAAYIDKVRQLESENSGLRREIQTTQEVVTR 376
R ++ T S + RED +Q L L +I L EN+ L EIQ Q + +
Sbjct: 649 RQREEDTRSTKMMLRFREDKIQRLESLLGNHISADSFLLEENNVLSEEIQLLQAKIDK 706
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,985,822
Number of Sequences: 28952
Number of extensions: 196363
Number of successful extensions: 585
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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