Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0668
(758 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21296| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.11
SB_58496| Best HMM Match : Ferritin (HMM E-Value=0.0012) 33 0.19
SB_29575| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.33
SB_27133| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.33
SB_27134| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.77
SB_7534| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.77
SB_41439| Best HMM Match : SWIM (HMM E-Value=0.088) 30 2.3
SB_59529| Best HMM Match : BPL_C (HMM E-Value=7.5) 29 4.1
SB_11751| Best HMM Match : Peptidase_C23 (HMM E-Value=0.34) 28 7.2
SB_22164| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_6162| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_27421| Best HMM Match : Peptidase_M35 (HMM E-Value=7.1) 28 9.5
SB_25452| Best HMM Match : CTF_NFI (HMM E-Value=1.2) 28 9.5
>SB_21296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 34.3 bits (75), Expect = 0.11
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +3
Query: 252 DCYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFANY 371
+C + KQI E+ AS YL+M +F D V PGF Y
Sbjct: 198 ECEAGINKQINLELYASYAYLSMAFHFDRDDVALPGFHKY 237
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +2
Query: 353 PRLRELFFDAATEEREHATKLIDYLLMRGKLTGSVTDLITYRAPANTSWESG 508
P + F A+ EEREHA KL+ + RG G + L + P W G
Sbjct: 232 PGFHKYFLKASHEEREHAEKLMKFQNERG---GRIV-LQDIKKPEKDEWGCG 279
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 609 LVDYLSGEFLDEQYKGQRDLAGKARPSRR*WTNTPALGEFHLRQE 743
+ D++ G FL EQ + ++LAG +R P LGE+ E
Sbjct: 312 MTDFIEGNFLTEQVEAIKELAGHLTNLKR---VGPGLGEYQYDHE 353
>SB_58496| Best HMM Match : Ferritin (HMM E-Value=0.0012)
Length = 126
Score = 33.5 bits (73), Expect = 0.19
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 267 MRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFANY 371
+ KQI +E+ A YL+M +F D +N PGF +
Sbjct: 38 INKQINKELYAHYTYLSMAFHFDRDDINLPGFNKF 72
>SB_29575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 394
Score = 32.7 bits (71), Expect = 0.33
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 252 DCYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFANY 371
+C + KQI E+ AS Y +M YF + V+ PGF +
Sbjct: 11 ECEAGINKQINLELYASYVYTSMACYFDREDVHLPGFHKF 50
>SB_27133| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 32.7 bits (71), Expect = 0.33
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = +2
Query: 353 PRLRELFFDAATEEREHATKLIDYLLMRGKLTGSVTDLITYRAPANTSWESG 508
P + F +A+ EEREHA KL + L RG G + L + P W G
Sbjct: 179 PGFHKYFMEASHEEREHAEKLAKFQLQRG---GRIV-LQDIKRPERDDWGCG 226
Score = 31.5 bits (68), Expect = 0.77
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 267 MRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFANY 371
+ KQI E+ AS Y++M +F D V PGF Y
Sbjct: 150 VNKQINLELYASYVYMSMAFHFDRDDVALPGFHKY 184
>SB_27134| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 289
Score = 31.5 bits (68), Expect = 0.77
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 267 MRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFANY 371
+ KQI E+ AS Y++M +F D V PGF Y
Sbjct: 135 VNKQINLELYASYVYMSMAYHFDRDDVALPGFHKY 169
Score = 31.5 bits (68), Expect = 0.77
Identities = 19/52 (36%), Positives = 24/52 (46%)
Frame = +2
Query: 353 PRLRELFFDAATEEREHATKLIDYLLMRGKLTGSVTDLITYRAPANTSWESG 508
P + F A+ EEREHA KL + L RG G + L + P W G
Sbjct: 164 PGFHKYFMKASHEEREHAEKLAKFQLQRG---GRIV-LQDIKRPERDDWGCG 211
>SB_7534| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 135
Score = 31.5 bits (68), Expect = 0.77
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 267 MRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFANY 371
+ KQI E+ AS Y++M +F D V PGF Y
Sbjct: 18 VNKQINLELYASYVYMSMAFHFDRDDVALPGFHKY 52
Score = 31.5 bits (68), Expect = 0.77
Identities = 19/52 (36%), Positives = 24/52 (46%)
Frame = +2
Query: 353 PRLRELFFDAATEEREHATKLIDYLLMRGKLTGSVTDLITYRAPANTSWESG 508
P + F A+ EEREHA KL + L RG G + L + P W G
Sbjct: 47 PGFHKYFIKASHEEREHAEKLAKFQLQRG---GRIV-LQDIKRPERDDWGCG 94
>SB_41439| Best HMM Match : SWIM (HMM E-Value=0.088)
Length = 921
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +2
Query: 596 NDYQPGRLFVRGIPRRTVQGPTRPRRQGSTLKKMMDKHA-GPRRVSSST 739
N Q L R + +++QGPTR R++G L K++ + G ++ S T
Sbjct: 860 NGSQQATLKGRPVQLQSLQGPTRKRKRGHDLAKVVQSNTQGSKKSGSHT 908
>SB_59529| Best HMM Match : BPL_C (HMM E-Value=7.5)
Length = 350
Score = 29.1 bits (62), Expect = 4.1
Identities = 21/82 (25%), Positives = 37/82 (45%)
Frame = +1
Query: 355 PASRTILRCCD*RTRARDQAH*LPAHEGKADRLRNRPHHVQGPRKHVVGERPSALEHALK 534
P+S ++RC R D A + A + + PH + P +H+V R S + ++
Sbjct: 105 PSSNYLVRCVTVCQRTGDIA--ILAGDKGVYIYHDTPHGYKNPERHIVSFRISDIAFSIN 162
Query: 535 LESDVTNSIRXVIKTCESSFQR 600
E V ++ R V + SF +
Sbjct: 163 NELIVVDNKRLVFYNRDHSFSQ 184
>SB_11751| Best HMM Match : Peptidase_C23 (HMM E-Value=0.34)
Length = 723
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +3
Query: 615 DYLSGEFLDEQYKGQRDLAGKARPSRR*WTNTPALGEFHLRQENSFRL 758
D + + L E + R L K R R W + P HLR+E + L
Sbjct: 241 DRIDVQMLREMLESLRTLFRKERSKRDGWRHAPNTFPLHLREEGNLTL 288
>SB_22164| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 142
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = +3
Query: 384 RLKNASTRPSSLTTCS*GES*QAP*PTSSRTGPPQTRRGRAAI 512
R AS+ P S+ + G S A P GPP RRG+A I
Sbjct: 38 RSPEASSPPPSVQSPDGGSS-VASQPVKKEAGPPPKRRGKALI 79
>SB_6162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1808
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 174 SNESEDSKENSPHLNFSYNHRFFDDT 97
+ ES KEN PH + N R +D+T
Sbjct: 413 AEESTSDKENVPHCSHGNNERCYDNT 438
>SB_27421| Best HMM Match : Peptidase_M35 (HMM E-Value=7.1)
Length = 556
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +1
Query: 442 ADRLRNRPHHVQGPRKHVVGERPS 513
ADRL PHHV P ++ PS
Sbjct: 482 ADRLPQHPHHVPTPSAYIANTDPS 505
>SB_25452| Best HMM Match : CTF_NFI (HMM E-Value=1.2)
Length = 1056
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +1
Query: 442 ADRLRNRPHHVQGPRKHVVGERPS 513
ADRL PHHV P ++ PS
Sbjct: 388 ADRLPQHPHHVPTPSAYIANTDPS 411
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,039,862
Number of Sequences: 59808
Number of extensions: 441377
Number of successful extensions: 1587
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1587
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -