Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0668
         (758 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g25520.1 68417.m03680 transcriptional co-regulator family pro...    30   1.5  
At2g40300.1 68415.m04964 ferritin, putative similar to ferritin ...    30   1.5  
At2g18230.1 68415.m02124 inorganic pyrophosphatase [soluble] (PP...    29   4.4  
At4g25515.1 68417.m03679 transcriptional co-regulator family pro...    28   5.9  
At3g11050.1 68416.m01333 ferritin, putative similar to ferritin ...    28   5.9  
At3g56090.1 68416.m06234 ferritin, putative similar to ferritin ...    28   7.7  
At2g25970.1 68415.m03117 KH domain-containing protein                  28   7.7  

>At4g25520.1 68417.m03680 transcriptional co-regulator family
           protein contains similarity to GP|18033922|gb|AAL57277
           SEUSS transcriptional co-regulator [Arabidopsis
           thaliana]
          Length = 748

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 21/64 (32%), Positives = 32/64 (50%)
 Frame = +3

Query: 366 NYSSMLRLKNASTRPSSLTTCS*GES*QAP*PTSSRTGPPQTRRGRAAISPRARPQAGE* 545
           NY SML  +NA   P+S T    G S Q P P S+++ P  + + R  +     P + + 
Sbjct: 563 NYQSMLMRQNAMNNPNSNTGKQEGFSSQNPTPNSNQS-PSSSSQQRHNLVTGGFPNSPQM 621

Query: 546 RHQQ 557
           + QQ
Sbjct: 622 QQQQ 625


>At2g40300.1 68415.m04964 ferritin, putative similar to ferritin
           subunit cowpea2 precursor [Vigna unguiculata]
           GI:2970654; contains Pfam profile PF00210: Ferritin-like
           domain
          Length = 259

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +2

Query: 359 LRELFFDAATEEREHATKLIDYLLMRG 439
           L + F +++ EEREHA KL++Y   RG
Sbjct: 132 LAKFFKESSLEEREHAEKLMEYQNKRG 158


>At2g18230.1 68415.m02124 inorganic pyrophosphatase [soluble] (PPA)
           / pyrophosphate phospho-hydrolase / PPase nearly
           identical to SP|P21216 Soluble inorganic pyrophosphatase
           (EC 3.6.1.1) (Pyrophosphate phospho- hydrolase) (PPase)
           {Arabidopsis thaliana}
          Length = 218

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = -3

Query: 237 PLIPDGDGADVTLCSCGRS*GSNESEDSKENSPHLNFSYNHRFFDDTQKN 88
           P+I  G+  D  +  C          D KE  PH   +   RFF+D +KN
Sbjct: 133 PMIDQGEKDDKIIAVCADDPEFRHYRDIKELPPH-RLAEIRRFFEDYKKN 181


>At4g25515.1 68417.m03679 transcriptional co-regulator family
           protein contains similarity to GP|18033922|gb|AAL57277
           SEUSS transcriptional co-regulator [Arabidopsis
           thaliana]
          Length = 471

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = +3

Query: 366 NYSSMLRLKNASTRPSSLTTCS*GES*QAP*PTSSRTGPPQTRRGRAAISPRARPQAGE* 545
           NY SML  +NA    +S T    G S Q P   +S   P  + + R  ++    P + + 
Sbjct: 286 NYQSMLIRQNAMNNQNSNTGNQEGFSSQNP-TLNSNQSPSSSSQQRENLATSGFPSSPQM 344

Query: 546 RHQQH 560
           + QQH
Sbjct: 345 QQQQH 349


>At3g11050.1 68416.m01333 ferritin, putative similar to ferritin
           subunit cowpea2 precursor GI:2970654 (Vigna
           unguiculata); contains Pfam profile PF00210:
           Ferritin-like domain
          Length = 253

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +3

Query: 252 DCYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFANY 371
           D  + +  QI  E   S  Y A+ AYF  D V   GFA +
Sbjct: 88  DSESAINDQINVEYNVSYVYHALYAYFDRDNVGLKGFAKF 127


>At3g56090.1 68416.m06234 ferritin, putative similar to ferritin
           subunit cowpea2 precursor [Vigna unguiculata]
           GI:2970654; contains Pfam profile PF00210: Ferritin-like
           domain
          Length = 259

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 359 LRELFFDAATEEREHATKLIDYLLMRG 439
           L + F +++ EEREHA  L++Y   RG
Sbjct: 130 LAKFFKESSVEEREHAELLMEYQNKRG 156


>At2g25970.1 68415.m03117 KH domain-containing protein 
          Length = 632

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
 Frame = +2

Query: 344 GEPPRLRELFFDAATEEREHATKLIDYLL-----MRGK-LTGSVTDLITYRAPANTSWES 505
           G+P   R L  D  TE+ EHA +L++ ++     MR   + G       Y+A   +SW  
Sbjct: 273 GDPTPERTLQIDGITEQIEHAKQLVNEIISGENRMRNSAMGGGYPQQGGYQARPPSSWAP 332

Query: 506 GHQPSSTP 529
              P + P
Sbjct: 333 PGGPPAQP 340


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,114,584
Number of Sequences: 28952
Number of extensions: 291236
Number of successful extensions: 774
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)