Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0667
(658 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27551| Best HMM Match : rve (HMM E-Value=6.3e-25) 32 0.47
SB_11605| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.47
SB_3742| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.47
SB_42815| Best HMM Match : rve (HMM E-Value=0.00022) 32 0.47
SB_31260| Best HMM Match : rve (HMM E-Value=5.2e-25) 32 0.47
SB_22949| Best HMM Match : rve (HMM E-Value=1.2e-19) 31 1.1
SB_37543| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_38098| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_51534| Best HMM Match : 7tm_1 (HMM E-Value=0) 29 4.4
SB_34832| Best HMM Match : SAP (HMM E-Value=1.4e-07) 28 5.8
SB_33148| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-09) 28 5.8
SB_20394| Best HMM Match : SbmA_BacA (HMM E-Value=6.2) 28 5.8
SB_14846| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_34805| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_33253| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_18955| Best HMM Match : rve (HMM E-Value=5.9e-17) 28 5.8
SB_11501| Best HMM Match : rve (HMM E-Value=3.8e-11) 28 5.8
>SB_27551| Best HMM Match : rve (HMM E-Value=6.3e-25)
Length = 291
Score = 31.9 bits (69), Expect = 0.47
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 281 FLKTVNVQHLPRHSDLKSVVIEMFKRT 361
FLK+ +QH S+LK+ V+E F RT
Sbjct: 216 FLKSKGIQHFSTQSELKASVVERFNRT 242
>SB_11605| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 794
Score = 31.9 bits (69), Expect = 0.47
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 281 FLKTVNVQHLPRHSDLKSVVIEMFKRT 361
FLK+ +QH S+LK+ V+E F RT
Sbjct: 161 FLKSKGIQHFSTRSELKASVVERFNRT 187
>SB_3742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1494
Score = 31.9 bits (69), Expect = 0.47
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = -2
Query: 258 FWCKIVFI*SLTQSIFLIYTKIF*RPYKLTHFSNVLIMLLQICGCMFF 115
F+C + I +++ + T F R + +TH+ L+ L + G +FF
Sbjct: 1365 FFCLSIIIFCYVRAVTALKTAQFGRKFNVTHYKRALVTLAIVTGVLFF 1412
>SB_42815| Best HMM Match : rve (HMM E-Value=0.00022)
Length = 1514
Score = 31.9 bits (69), Expect = 0.47
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 281 FLKTVNVQHLPRHSDLKSVVIEMFKRT 361
FLK+ +QH S+LK+ V+E F RT
Sbjct: 49 FLKSKGIQHFSTQSELKASVVERFNRT 75
>SB_31260| Best HMM Match : rve (HMM E-Value=5.2e-25)
Length = 1962
Score = 31.9 bits (69), Expect = 0.47
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 281 FLKTVNVQHLPRHSDLKSVVIEMFKRT 361
FLK+ +QH S+LK+ V+E F RT
Sbjct: 714 FLKSQGIQHFSTRSELKASVVERFNRT 740
>SB_22949| Best HMM Match : rve (HMM E-Value=1.2e-19)
Length = 158
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 281 FLKTVNVQHLPRHSDLKSVVIEMFKRTAVEFI 376
FLK +QH S+ K+ V+E F RT+ E++
Sbjct: 86 FLKKRGIQHFSTKSETKASVVERFNRTSKEWM 117
>SB_37543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 281 FLKTVNVQHLPRHSDLKSVVIEMFKRT 361
FLK+ +QH S+LK+ V+E F RT
Sbjct: 209 FLKSKGIQHFSTRSELKASVVEPFIRT 235
>SB_38098| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 503
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 281 FLKTVNVQHLPRHSDLKSVVIEMFKRTAVEFI 376
FLK+ + + S+LKS V+E F RT +I
Sbjct: 183 FLKSKGIHYFSTRSELKSSVVERFNRTLKTWI 214
>SB_51534| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 795
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/54 (27%), Positives = 31/54 (57%)
Frame = +3
Query: 57 SNTRLTLNLFGTKYIILNIKKTYNHIFVIALLIRLKNVLAYMAFKIFLYKLRKL 218
+++ ++N K+ I I + + ++ LL NVL MAFK+F +++R++
Sbjct: 8 NDSNSSINSPPPKFSITTIAVSSTFVVILLLLTVFGNVLVIMAFKVF-HRMRQV 60
>SB_34832| Best HMM Match : SAP (HMM E-Value=1.4e-07)
Length = 1054
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +3
Query: 57 SNTRLTLNLFGTKYIILNIKKTYNHIFVIALLIRLKNV 170
S + LNL G K +LNI NHI I ++ L NV
Sbjct: 315 STDSIVLNLRGFKMALLNIVSWPNHIDEIRIMNMLANV 352
>SB_33148| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-09)
Length = 330
Score = 28.3 bits (60), Expect = 5.8
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = -1
Query: 265 SIILVQNCVYLVSNTINF-LNLYKNILKAI*ANTFFKRINNAITNMWLYVF 116
+I LV NC YL+ N F + K LK ++ F+ +N+A N ++Y F
Sbjct: 266 AIFLVCNCFYLIWNACAFVVPGCKPSLKLTIVSSLFRYLNSA-PNFFVYAF 315
>SB_20394| Best HMM Match : SbmA_BacA (HMM E-Value=6.2)
Length = 215
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 515 WRXLPRXLSTYRWVLSGLLG 574
WR L ++ Y W LSGLLG
Sbjct: 85 WRTLAGNINNYYWELSGLLG 104
>SB_14846| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 153
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 515 WRXLPRXLSTYRWVLSGLLG 574
WR L ++ Y W LSGLLG
Sbjct: 26 WRTLAGNINNYYWELSGLLG 45
>SB_34805| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 194
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +3
Query: 57 SNTRLTLNLFGTKYIILNIKKTYNHIFVIALLIRLKNV 170
S + NL G K +LNI NHI VI ++ L NV
Sbjct: 122 STDSIVPNLRGFKMALLNIVSLPNHIDVIRIMNMLDNV 159
>SB_33253| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1383
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 281 FLKTVNVQHLPRHSDLKSVVIEMFKRT 361
FLK +QH S+ K+ V+E F RT
Sbjct: 429 FLKKRGIQHFSTKSETKASVVERFNRT 455
>SB_18955| Best HMM Match : rve (HMM E-Value=5.9e-17)
Length = 421
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 278 DFLKTVNVQHLPRHSDLKSVVIEMFKRTAVE 370
+FL NV+H +++ K+ V+E F RT E
Sbjct: 161 EFLTRNNVRHFVTYNETKAQVVERFNRTLKE 191
>SB_11501| Best HMM Match : rve (HMM E-Value=3.8e-11)
Length = 357
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 281 FLKTVNVQHLPRHSDLKSVVIEMFKRT 361
FL + +QH S+ K+ V+E F RT
Sbjct: 202 FLNSKGIQHFSTRSEFKASVVERFNRT 228
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,112,636
Number of Sequences: 59808
Number of extensions: 402063
Number of successful extensions: 1116
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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