Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0667
         (658 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19020.1 68418.m02260 pentatricopeptide (PPR) repeat-containi...    28   4.8  
At1g43900.1 68414.m05065 protein phosphatase 2C, putative / PP2C...    28   6.3  
At1g29320.1 68414.m03584 transducin family protein / WD-40 repea...    28   6.3  
At2g18650.1 68415.m02173 zinc finger (C3HC4-type RING finger) fa...    27   8.3  

>At5g19020.1 68418.m02260 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 939

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 131 HICNSIINTFEKCVSLYGLQNIFV*IKKID 220
           +ICNS++N + KC  L   +++F    K+D
Sbjct: 331 YICNSVLNMYAKCRLLADAESVFRDHAKLD 360


>At1g43900.1 68414.m05065 protein phosphatase 2C, putative / PP2C,
           putative similar to protein phosphatase type 2C
           GI:4336436 from [Lotus japonicus]
          Length = 371

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
 Frame = +2

Query: 263 GPRQCDFLKTVNVQHLPRH----SDLKSVVIEMFKRTAVEFI 376
           G R  ++LK    ++L  H    SD K  ++E+FK+T  E++
Sbjct: 163 GARTAEYLKNNLFKNLVSHDDFISDTKKAIVEVFKQTDEEYL 204


>At1g29320.1 68414.m03584 transducin family protein / WD-40 repeat
           family protein contains 3 WD-40 repeats (PF00400);
           similar to meiotic recombination protein REC14
           (GI:11139242) [Homo sapiens]; similar to unknown protein
           GI:13623493 [Homo sapiens]
          Length = 468

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 247 FAPKLWTAAM*LSKDSQRSALTKTFGFKVRCY 342
           F P  +T+A  LSKD  R  +T T   +VR Y
Sbjct: 212 FTPTWFTSATFLSKDDHRKFVTGTKSHQVRLY 243


>At2g18650.1 68415.m02173 zinc finger (C3HC4-type RING finger)
           family protein similar to RING-H2 finger protein RHX1a
           [Arabidopsis thaliana] GI:3790591; contains Pfam profile
           PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 423

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 175 ANTFFKRINNAITNMWLYVFFMLSIIYFVPNKLSV 71
           +NT    +N+ IT   L +  +LSII+F+   L +
Sbjct: 28  SNTSLSNLNSKITPNILLIIIILSIIFFISGLLHI 62


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,809,787
Number of Sequences: 28952
Number of extensions: 271657
Number of successful extensions: 685
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)