Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0664
         (656 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54248| Best HMM Match : ECH (HMM E-Value=6.6e-11)                  115   3e-26
SB_19701| Best HMM Match : No HMM Matches (HMM E-Value=.)              82   4e-16
SB_43237| Best HMM Match : No HMM Matches (HMM E-Value=.)              54   8e-08
SB_26566| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   3e-05
SB_6823| Best HMM Match : No HMM Matches (HMM E-Value=.)               44   1e-04
SB_20977| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   3e-04
SB_21231| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   6e-04
SB_20978| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.001
SB_32164| Best HMM Match : ECH (HMM E-Value=0.02)                      40   0.001
SB_31836| Best HMM Match : ECH (HMM E-Value=3.3e-06)                   38   0.007
SB_58262| Best HMM Match : Cytochrom_B_C (HMM E-Value=0.77)            34   0.089
SB_31954| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_37813| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_18929| Best HMM Match : BRCT (HMM E-Value=1.4e-08)                  29   4.4  
SB_47146| Best HMM Match : 7tm_1 (HMM E-Value=6.6e-10)                 28   7.7  

>SB_54248| Best HMM Match : ECH (HMM E-Value=6.6e-11)
          Length = 230

 Score =  115 bits (277), Expect = 3e-26
 Identities = 54/84 (64%), Positives = 63/84 (75%)
 Frame = +1

Query: 256 IAVKDSKTGFGLPEVMLGLLPGGGGTQRLPALTSIPTTLDLALTGKTVKADKAKKLGIVD 435
           IAV D KT    PEVMLGLLPG GGTQRLP L  +P +LD+ LTGK ++A KAKK+G+VD
Sbjct: 29  IAVNDGKTVLSAPEVMLGLLPGAGGTQRLPRLVGLPDSLDMMLTGKNIRAQKAKKMGLVD 88

Query: 436 LLVSPLGPGLGQPEENTAKYLETV 507
           +LV PLGPGL  P ENT + LE V
Sbjct: 89  MLVQPLGPGLLPPSENTHQQLEKV 112



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 17/26 (65%), Positives = 21/26 (80%)
 Frame = +2

Query: 176 SRKPYIAAIQGSCLGGGLETALACKY 253
           S KP +AAI G+C+GGGLE AL+C Y
Sbjct: 2   SPKPVVAAIMGTCMGGGLELALSCHY 27


>SB_19701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 509

 Score = 81.8 bits (193), Expect = 4e-16
 Identities = 33/77 (42%), Positives = 56/77 (72%)
 Frame = +2

Query: 2   IVNEIETNSGIEAAVIISGKPGCFIAGADISMIENCKTKEEVVSLSKRGHEIFRRIEQSR 181
           ++ EI  N  ++ +V++S KPGC+IAGADI+M++  +   +V  ++K G ++++ +E S 
Sbjct: 70  VMQEITHNPDVKCSVLMSAKPGCWIAGADINMLKAGENAAQVTEIAKGGQQVYQFLEDSP 129

Query: 182 KPYIAAIQGSCLGGGLE 232
           KP +AAI G+C+GGGLE
Sbjct: 130 KPVVAAIMGTCMGGGLE 146


>SB_43237| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 311

 Score = 54.4 bits (125), Expect = 8e-08
 Identities = 24/59 (40%), Positives = 33/59 (55%)
 Frame = +1

Query: 256 IAVKDSKTGFGLPEVMLGLLPGGGGTQRLPALTSIPTTLDLALTGKTVKADKAKKLGIV 432
           I     K  FG PE+++G +PG GGTQRL         +++ LTG  + AD A K G+V
Sbjct: 155 IIYASDKAKFGQPEILIGTIPGAGGTQRLTRAVGKSLAMEMVLTGDPINADHALKAGLV 213



 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 25/68 (36%), Positives = 39/68 (57%)
 Frame = +2

Query: 44  VIISGKPGCFIAGADISMIENCKTKEEVVSLSKRGHEIFRRIEQSRKPYIAAIQGSCLGG 223
           ++++G    F AGADI  ++   T ++ +S    GH  + R+ +  KP IAA+ G  LGG
Sbjct: 89  IVLTGCGRAFAAGADIKEMQPL-TYQKCLSGDFLGH--WTRVSKCTKPVIAAVNGFALGG 145

Query: 224 GLETALAC 247
           G E A+ C
Sbjct: 146 GCELAMMC 153


>SB_26566| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1141

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 25/77 (32%), Positives = 44/77 (57%)
 Frame = +2

Query: 2    IVNEIETNSGIEAAVIISGKPGCFIAGADISMIENCKTKEEVVSLSKRGHEIFRRIEQSR 181
            +V+E+E     +A +I+ G  G F++G D+S+++   T  E   +    H+ F R+++  
Sbjct: 912  VVDELEKWQAGKA-LILHGDAGTFVSGGDLSVLKEIHTPGEGEQMCYFMHKTFARLQRLP 970

Query: 182  KPYIAAIQGSCLGGGLE 232
               +AAIQG  +GGG E
Sbjct: 971  LISLAAIQGLAIGGGAE 987



 Score = 32.7 bits (71), Expect = 0.27
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +1

Query: 295  EVMLGLLPGGGGTQRLPALTSIPTTLDLALTGKTVKADKAKKLGIVD 435
            +  +GL PG GG  RL  L      +++ L  K++K +++   G+VD
Sbjct: 1021 QARMGLTPGWGGGARLVQLVGRQKAMEILLQCKSMKLEESLMCGLVD 1067


>SB_6823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 287

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 27/77 (35%), Positives = 41/77 (53%)
 Frame = +2

Query: 17  ETNSGIEAAVIISGKPGCFIAGADISMIENCKTKEEVVSLSKRGHEIFRRIEQSRKPYIA 196
           E +  +  AV+ +GK G F AG+D+  +     +  + S    G E    + ++ +P I 
Sbjct: 68  EIDDSVNVAVL-TGKGGNFCAGSDLQELAQKDAETYMKSFYPPG-EGDGPMAEANQPVIG 125

Query: 197 AIQGSCLGGGLETALAC 247
           AIQG  +GGGLE AL C
Sbjct: 126 AIQGYAVGGGLELALLC 142



 Score = 41.1 bits (92), Expect = 8e-04
 Identities = 24/70 (34%), Positives = 38/70 (54%)
 Frame = +1

Query: 256 IAVKDSKTGFGLPEVMLGLLPGGGGTQRLPALTSIPTTLDLALTGKTVKADKAKKLGIVD 435
           + V +  + FG      G+    GG  RLP L  +   LDL +TG+ VKA +A ++G+V+
Sbjct: 144 LRVCEEDSVFGFFNRRFGVPLVDGGAVRLPYLIGLSRALDLIMTGRAVKAQEAIEIGLVN 203

Query: 436 LLVSPLGPGL 465
            +V P G  +
Sbjct: 204 RVV-PKGKAI 212


>SB_20977| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 240

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 21/86 (24%), Positives = 42/86 (48%)
 Frame = +2

Query: 5   VNEIETNSGIEAAVIISGKPGCFIAGADISMIENCKTKEEVVSLSKRGHEIFRRIEQSRK 184
           + ++E+N+     ++ S  P  F AG D+        ++ +    +R  +++ ++  SR 
Sbjct: 23  LEDLESNTDCRGLIVTSSMPKVFSAGLDLVKELYKSDEKRLFVFWRRFQDVWMQLYGSRL 82

Query: 185 PYIAAIQGSCLGGGLETALACKYPLL 262
             +AA+ G  + GG   A AC Y L+
Sbjct: 83  ATVAAVNGHAVAGGCLLAAACDYRLM 108


>SB_21231| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 43

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 18/30 (60%), Positives = 23/30 (76%)
 Frame = +1

Query: 418 KLGIVDLLVSPLGPGLGQPEENTAKYLETV 507
           ++G+VD+LV PLGPGL  P ENT + LE V
Sbjct: 8   QMGLVDMLVQPLGPGLLPPSENTHQQLEKV 37


>SB_20978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1683

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 21/67 (31%), Positives = 37/67 (55%)
 Frame = +2

Query: 62   PGCFIAGADISMIENCKTKEEVVSLSKRGHEIFRRIEQSRKPYIAAIQGSCLGGGLETAL 241
            P  F AG D+  +   + K ++V+  K   +++ R+  SR   +AAI+G  + GG   +L
Sbjct: 1475 PNIFCAGLDLKEVLALR-KSKLVTFRKTFQDMWSRLYGSRLVTMAAIKGHAIAGGCVLSL 1533

Query: 242  ACKYPLL 262
            AC Y ++
Sbjct: 1534 ACDYSVM 1540


>SB_32164| Best HMM Match : ECH (HMM E-Value=0.02)
          Length = 280

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 23/56 (41%), Positives = 28/56 (50%)
 Frame = +1

Query: 262 VKDSKTGFGLPEVMLGLLPGGGGTQRLPALTSIPTTLDLALTGKTVKADKAKKLGI 429
           V   KT F +PE  +G  P  GG   LP L+     L LALTG+ +K    K  GI
Sbjct: 133 VATEKTTFAMPETAIGFFPDVGGAHALPRLSG-KLGLFLALTGQRLKGYNVKLAGI 187


>SB_31836| Best HMM Match : ECH (HMM E-Value=3.3e-06)
          Length = 149

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +2

Query: 152 EIFRRIEQSRKPYIAAIQGSCLGGGLETALAC 247
           E F  IE+  KP IAA+  +C+GGG++   AC
Sbjct: 30  ESFTAIEKCEKPVIAAVHSACVGGGVDMICAC 61


>SB_58262| Best HMM Match : Cytochrom_B_C (HMM E-Value=0.77)
          Length = 393

 Score = 34.3 bits (75), Expect = 0.089
 Identities = 15/22 (68%), Positives = 16/22 (72%)
 Frame = +2

Query: 182 KPYIAAIQGSCLGGGLETALAC 247
           KP I AIQG  +GGGLE AL C
Sbjct: 358 KPVIGAIQGYAVGGGLELALLC 379


>SB_31954| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/63 (28%), Positives = 31/63 (49%)
 Frame = +1

Query: 256 IAVKDSKTGFGLPEVMLGLLPGGGGTQRLPALTSIPTTLDLALTGKTVKADKAKKLGIVD 435
           +AV   K+ F  P V +GL     G     A+      +++ LTG+ + A +A + G+V 
Sbjct: 106 VAVASDKSQFATPGVNIGLFCSTPGVALARAVPR-KVAMEMLLTGRPITAGEALRHGLVS 164

Query: 436 LLV 444
            +V
Sbjct: 165 RVV 167


>SB_37813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
 Frame = +2

Query: 2   IVNEIETNSGIEAAVIISGKPGCFIAGADISMIENCKTKE-EVVSLSKRGHEIFRRIEQS 178
           ++  +E +  ++  V++ G    +  G  +++IE+      E  +     ++I R +  S
Sbjct: 232 VLQAVERDDRVKV-VVLKGGYNFYSNGIHLNVIEDATDPALEAWNNINAINDIVRNVFTS 290

Query: 179 RKPYIAAIQGSCLGGGLETALA 244
           +K  I A+QG+   GG+  ALA
Sbjct: 291 KKVTITAMQGNAGAGGVMMALA 312


>SB_18929| Best HMM Match : BRCT (HMM E-Value=1.4e-08)
          Length = 1213

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = +1

Query: 310 LLPGGGGTQRLPALTSIPTTLDLALTGKTVKADKAKKLGIVDLLVSPLGPGLGQPEENTA 489
           +L  G G Q+     ++P  LD + +   +   K  K  + DL+++P+       EEN A
Sbjct: 327 MLQTGSGPQKKRKRGNVPQHLDASESDSNISVAKKPKNAVKDLIITPV-----LDEENAA 381

Query: 490 K 492
           K
Sbjct: 382 K 382


>SB_47146| Best HMM Match : 7tm_1 (HMM E-Value=6.6e-10)
          Length = 372

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
 Frame = -1

Query: 317 GKSPNMTSGSPNPVLESF-TAMDIYM----QEQSLIHLLDSCLVLRQYTVS-VIVRFF 162
           G SP  T G P P+  S+ TAMD  +    + ++ +H L S L L +  ++  I  FF
Sbjct: 215 GVSPKKTPGYPGPIHRSYTTAMDSNIVPVAKRRATLHDLSSFLALAKLCINPAIYSFF 272


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,100,029
Number of Sequences: 59808
Number of extensions: 464382
Number of successful extensions: 1453
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1448
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)