Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0654
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18329| Best HMM Match : AMP-binding (HMM E-Value=2.7e-18)           32   0.38 
SB_31652| Best HMM Match : Peptidase_C2 (HMM E-Value=0)                30   1.5  
SB_1648| Best HMM Match : UPF0061 (HMM E-Value=5.2e-10)                30   1.5  
SB_30353| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_13190| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_36975| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_30394| Best HMM Match : Helicase_C (HMM E-Value=1e-20)              28   6.2  
SB_54674| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_18329| Best HMM Match : AMP-binding (HMM E-Value=2.7e-18)
          Length = 1076

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = +3

Query: 117 QHNQKNEYRNFNRCWGRSTRKFGNNSSEF-PDKPKRAKVHSRKQRTILRSKGLTDTEIQK 293
           QH + +   + N+ W  +T  FGNN+ ++ P   K  K   +K R    ++G  D ++  
Sbjct: 480 QHVETSSRGHINKMWLEAT-GFGNNTGKYAPSSEKDRKDDLKKSRRERITEGDEDYDLDT 538

Query: 294 ALEKCMNLVEFPSM 335
           +    + LVE  SM
Sbjct: 539 SSSSRLTLVEAGSM 552


>SB_31652| Best HMM Match : Peptidase_C2 (HMM E-Value=0)
          Length = 1133

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +2

Query: 350 VFPPIQEFLVQRSCSSI-FDVWKFSLWMLLVL*ELRPTFNIR-RSTKAQD 493
           V PP Q F     C    F+ W+F  W+ +++ +  PT+N R   TK+ D
Sbjct: 98  VCPPDQSFEPGSYCGMFRFNFWQFGEWVEVIVDDYLPTYNGRLYFTKSDD 147


>SB_1648| Best HMM Match : UPF0061 (HMM E-Value=5.2e-10)
          Length = 371

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = +3

Query: 126 QKNEYRNFNRCWGRSTRKFGNNSSEFPDKPKRAKVHSRKQRTILRSKGLTDTEIQKA 296
           +  + +N+    GR   + G N     D+ +R ++H+   R +LR+  +  T I KA
Sbjct: 269 EAQQQKNWRDWLGRYQERLGRNGGHDTDEKRRIRMHAVNPRYVLRN-WMAQTAIDKA 324


>SB_30353| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1553

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 476 STKAQDYERMPEEVRKSLEDLNTNVFALKGELNSLQQ 586
           S K  DYER  E+V++  +++   +   K ELN+  Q
Sbjct: 825 SIKVSDYERQLEKVKQEKQEITQELQETKDELNTTCQ 861


>SB_13190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 407

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = -3

Query: 609 SRLHLNVFCWREFNSPFSAKTLVFKSSRLFRTSSGIRS*SCALVDLRILNV-GRSSYKTS 433
           +R H  +  +   ++P+S K L F   R FR  S I   +C  V    +NV  R  +K+ 
Sbjct: 138 TRFHWKLQPFPSRSTPYSLKYLCFAGRRCFRQVS-IEILTCNQVRHAFMNVPSRDRHKSR 196

Query: 432 NIHKLNFH 409
             H L  H
Sbjct: 197 GTHGLRRH 204


>SB_36975| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 200

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -3

Query: 327 ETQLDSCISLKLSEFQYQLDLCYVES 250
           + Q+DSC SL L   +++LDLC  E+
Sbjct: 90  QDQIDSCRSLGLIAAKFELDLCKEEN 115


>SB_30394| Best HMM Match : Helicase_C (HMM E-Value=1e-20)
          Length = 556

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -3

Query: 327 ETQLDSCISLKLSEFQYQLDLCYVES 250
           + Q+DSC SL L   +++LDLC  E+
Sbjct: 93  QDQIDSCRSLGLIAAKFELDLCKEEN 118


>SB_54674| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1149

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 467 IRRSTKAQDYERMPEEVRKSLEDLNTNVFALKGELNSLQQN 589
           +R    ++  ERM ++  + L DL   VF+L   L   +QN
Sbjct: 495 VRERDWSRAEERMRQDYEQQLSDLKQEVFSLTARLREEEQN 535


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,595,249
Number of Sequences: 59808
Number of extensions: 387741
Number of successful extensions: 1098
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)