Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0654
         (686 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51490.1 68418.m06386 pectinesterase family protein contains ...    29   2.9  
At5g57390.1 68418.m07170 ovule development protein, putative sim...    28   5.0  
At5g24880.1 68418.m02946 expressed protein ; expression supporte...    28   5.0  
At1g09620.1 68414.m01079 tRNA synthetase class I (I, L, M and V)...    28   5.0  
At5g51500.1 68418.m06387 pectinesterase family protein contains ...    28   6.7  
At2g37360.1 68415.m04582 ABC transporter family protein                27   8.8  

>At5g51490.1 68418.m06386 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 536

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +1

Query: 64  RKFDLSKFYIYFYY-IVTNNITRRMSTETLIAAGDGVRENLVT 189
           RK    +F IY    I   NI  R++ + ++  GDG+R  ++T
Sbjct: 245 RKVTSGRFVIYVKRGIYQENINVRLNNDDIMLVGDGMRSTIIT 287


>At5g57390.1 68418.m07170 ovule development protein, putative
           similar to ovule development protein AINTEGUMENTA
           (GI:1209099)[Arabidopsis thaliana]
          Length = 555

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 593 TCFAGGNSIRPSVRRHWYSNLLDFSEPPQAFVRSLA 486
           T +  G  I+P    H++SN+  F   P+A +R LA
Sbjct: 423 TFYHTGIPIKPDPADHYWSNIFGFQANPKAEMRPLA 458


>At5g24880.1 68418.m02946 expressed protein ; expression supported
           by MPSS
          Length = 443

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/59 (30%), Positives = 32/59 (54%)
 Frame = +3

Query: 165 RSTRKFGNNSSEFPDKPKRAKVHSRKQRTILRSKGLTDTEIQKALEKCMNLVEFPSMSS 341
           R+  K GN +   P  PK++ ++S    +  + +G  +  I+KA +K + L +  SMSS
Sbjct: 139 RNVPKGGNTAKSPPVAPKKSGLNSSSTSSKSKKEGSENVRIKKASDKEIAL-DSASMSS 196


>At1g09620.1 68414.m01079 tRNA synthetase class I (I, L, M and V)
           family protein similar to cytosolic leucyl-tRNA
           synthetase [Candida albicans] GI:9858190; contains Pfam
           profile PF00133: tRNA synthetases class I (I, L, M and
           V)
          Length = 1084

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
 Frame = +3

Query: 210 KPKRAKVHSRK-----QRTILRSKGLTDTEIQKALEKCMNLVEFPSMSSELMFFHQSRSS 374
           K K++KV ++      Q  I+RS GLTD+EI    E    L  FP ++ E +  +     
Sbjct: 145 KGKKSKVAAKAGGQVYQWEIMRSFGLTDSEIANFREPSEWLYYFPPLAVEDLRAYGLGCD 204

Query: 375 WFRDHV 392
           W R  V
Sbjct: 205 WRRSFV 210


>At5g51500.1 68418.m06387 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 540

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +1

Query: 64  RKFDLSKFYIYFYY-IVTNNITRRMSTETLIAAGDGVRENLVT 189
           RK    +F IY    I   N+  R++ + ++  GDG+R  ++T
Sbjct: 249 RKVTSGRFVIYVKRGIYQENLNVRLNNDNIMLVGDGMRYTIIT 291


>At2g37360.1 68415.m04582 ABC transporter family protein 
          Length = 755

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +3

Query: 129 KNEYRNFNRCWGRSTRKFGNNS-SEFPDKPK 218
           +NE++N  RC+ R  + F N+   EFP+  K
Sbjct: 656 QNEFQNPTRCFARGVQLFDNSPLGEFPNDVK 686


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,049,655
Number of Sequences: 28952
Number of extensions: 278003
Number of successful extensions: 829
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)