Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0652
(470 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14472| Best HMM Match : No HMM Matches (HMM E-Value=.) 119 1e-27
SB_58028| Best HMM Match : zf-C4 (HMM E-Value=0) 82 2e-16
SB_12318| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 2e-09
SB_10105| Best HMM Match : zf-C4 (HMM E-Value=3.60001e-40) 59 2e-09
SB_33135| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 3e-09
SB_58027| Best HMM Match : zf-C4 (HMM E-Value=0) 56 1e-08
SB_32228| Best HMM Match : zf-C4 (HMM E-Value=6.2e-23) 56 1e-08
SB_56305| Best HMM Match : zf-C4 (HMM E-Value=0) 56 1e-08
SB_18088| Best HMM Match : zf-C4 (HMM E-Value=7.56701e-44) 56 2e-08
SB_51757| Best HMM Match : Hormone_recep (HMM E-Value=6.4e-37) 55 3e-08
SB_30131| Best HMM Match : zf-C4 (HMM E-Value=8.39938e-42) 54 5e-08
SB_4250| Best HMM Match : zf-C4 (HMM E-Value=2.3e-39) 53 1e-07
SB_12110| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 6e-07
SB_20447| Best HMM Match : zf-C4 (HMM E-Value=2.09999e-41) 50 1e-06
SB_5770| Best HMM Match : Hormone_recep (HMM E-Value=3.4e-22) 48 3e-06
SB_9970| Best HMM Match : zf-C4 (HMM E-Value=9.4e-38) 46 2e-05
SB_58064| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 6e-05
SB_36879| Best HMM Match : Hormone_recep (HMM E-Value=0) 38 0.003
SB_38546| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43) 33 0.16
SB_11498| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.64
SB_5110| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.64
SB_30569| Best HMM Match : 3-alpha (HMM E-Value=6) 30 1.1
SB_56020| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 29 2.6
SB_12193| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_43276| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 4.5
SB_40929| Best HMM Match : Attractin (HMM E-Value=5.1) 28 4.5
SB_3588| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_44753| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_31180| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_12550| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_58730| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8
SB_34086| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8
SB_23024| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8
>SB_14472| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 119 bits (287), Expect = 1e-27
Identities = 55/73 (75%), Positives = 63/73 (86%), Gaps = 1/73 (1%)
Frame = +1
Query: 253 YPASRYSPCVQ-PTNVMGIDNICELAARLLFSAVEWARNIPFFPELQVTDQVALLRLVWS 429
YP +R+ + P +MGI+NICELAARLLFSAVEWARNIPFFP+L VTDQVALLRLVWS
Sbjct: 358 YPTTRFQQGLNMPCGIMGIENICELAARLLFSAVEWARNIPFFPDLAVTDQVALLRLVWS 417
Query: 430 ELFVLNASKCSMP 468
ELFVLNA++C MP
Sbjct: 418 ELFVLNAAQCPMP 430
Score = 100 bits (240), Expect = 5e-22
Identities = 47/83 (56%), Positives = 56/83 (67%)
Frame = +3
Query: 3 SCRGNRSCPIDQHHRNQCQFCRLRKCLKMGMRREAVQRGRVXXXXXXXXXXXXXFTLGNG 182
+CR +R CPIDQHHRNQCQ+CRL+KCLK+GMRREAVQRGR+ G+G
Sbjct: 278 TCRASRDCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRIPAAQTPTQNAALPGINGDG 337
Query: 183 DPGAGLNNHPYLSSYISLLLRAE 251
N H YLS +I+LLLRAE
Sbjct: 338 ----STNGHSYLSGFIALLLRAE 356
>SB_58028| Best HMM Match : zf-C4 (HMM E-Value=0)
Length = 438
Score = 82.2 bits (194), Expect = 2e-16
Identities = 40/83 (48%), Positives = 53/83 (63%)
Frame = +3
Query: 3 SCRGNRSCPIDQHHRNQCQFCRLRKCLKMGMRREAVQRGRVXXXXXXXXXXXXXFTLGNG 182
SCRG R+CP+D +RNQCQ+CRL+KCLK+GMR+EAVQ+GR+ NG
Sbjct: 114 SCRGVRNCPVDIQNRNQCQYCRLKKCLKVGMRKEAVQKGRIPSTHPDVGPLSVSMVEMNG 173
Query: 183 DPGAGLNNHPYLSSYISLLLRAE 251
+ + SSYI+LLLRA+
Sbjct: 174 -------HQSFYSSYITLLLRAD 189
Score = 79.8 bits (188), Expect = 1e-15
Identities = 40/74 (54%), Positives = 52/74 (70%), Gaps = 2/74 (2%)
Frame = +1
Query: 247 RSYPASRYSPCVQ-PTNVMGIDNICELAARLLFSAVEWARNIPFFPELQVTDQVALLRLV 423
R+ +RY + P N+ G++N ELAARLL SAVEWA+NIPF+ +L + DQ LLR
Sbjct: 187 RADTIARYQQSLTLPCNINGLENTPELAARLLVSAVEWAKNIPFYSDLPLPDQAVLLRSC 246
Query: 424 WSELFVLNASK-CS 462
WSELF LNA++ CS
Sbjct: 247 WSELFTLNAAQHCS 260
>SB_12318| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 420
Score = 59.3 bits (137), Expect = 2e-09
Identities = 28/54 (51%), Positives = 38/54 (70%)
Frame = +1
Query: 307 DNICELAARLLFSAVEWARNIPFFPELQVTDQVALLRLVWSELFVLNASKCSMP 468
D+I E A +LL+ +V WARNIP F +L DQ LL WSELFVL++++ S+P
Sbjct: 227 DSIYESAVQLLYMSVTWARNIPTFLDLPFRDQAILLEEGWSELFVLSSAQFSLP 280
>SB_10105| Best HMM Match : zf-C4 (HMM E-Value=3.60001e-40)
Length = 370
Score = 59.3 bits (137), Expect = 2e-09
Identities = 22/39 (56%), Positives = 30/39 (76%)
Frame = +3
Query: 6 CRGNRSCPIDQHHRNQCQFCRLRKCLKMGMRREAVQRGR 122
C G+ SC +D+ +R QCQ CR +KC +GMRREA++RGR
Sbjct: 58 CEGSGSCRVDKQNRTQCQACRFKKCATVGMRREAIRRGR 96
Score = 41.9 bits (94), Expect = 3e-04
Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 1/113 (0%)
Frame = +1
Query: 121 ECLHRSRPAWDSLASSP*ATVTPAPDS-TIIHISRRTYRCYCGRSYPASRYSPCVQPTNV 297
E + R RP S S + TP D +++ R+ R YP+S +Q + V
Sbjct: 90 EAIRRGRPTKYSYISRSSKSFTPQYDLISVLTQLERSIRPPV--PYPSSG----LQSSPV 143
Query: 298 MGIDNICELAARLLFSAVEWARNIPFFPELQVTDQVALLRLVWSELFVLNASK 456
+C + L S ++W+R +P F L V +Q ++LR W E+ +++A++
Sbjct: 144 SMYHRVCSI----LVSTLDWSRRVPMFANLDVCEQYSVLRSRWCEMLIVSAAQ 192
>SB_33135| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 58.4 bits (135), Expect = 3e-09
Identities = 21/33 (63%), Positives = 29/33 (87%)
Frame = +3
Query: 24 CPIDQHHRNQCQFCRLRKCLKMGMRREAVQRGR 122
CP+++ +RN CQFCR+RKCL +GM+REAVQ+ R
Sbjct: 66 CPVNKRYRNSCQFCRMRKCLAVGMKREAVQQAR 98
Score = 54.4 bits (125), Expect = 5e-08
Identities = 24/50 (48%), Positives = 33/50 (66%)
Frame = +1
Query: 319 ELAARLLFSAVEWARNIPFFPELQVTDQVALLRLVWSELFVLNASKCSMP 468
E+AARLLF WA+ + F EL DQV LLR WS++F++N + +MP
Sbjct: 173 EMAARLLFMTAHWAKKVKHFSELSHFDQVTLLRENWSKVFIINLVQWAMP 222
>SB_58027| Best HMM Match : zf-C4 (HMM E-Value=0)
Length = 396
Score = 56.4 bits (130), Expect = 1e-08
Identities = 25/57 (43%), Positives = 37/57 (64%)
Frame = +1
Query: 286 PTNVMGIDNICELAARLLFSAVEWARNIPFFPELQVTDQVALLRLVWSELFVLNASK 456
P N D ELAA +LF+ V+WAR + F L +DQ+ LL++ W++LF+L AS+
Sbjct: 176 PLNQNRTDVAYELAANVLFAVVDWARKLTTFNNLMDSDQITLLKMAWTDLFLLEASR 232
Score = 52.0 bits (119), Expect = 2e-07
Identities = 19/37 (51%), Positives = 28/37 (75%)
Frame = +3
Query: 3 SCRGNRSCPIDQHHRNQCQFCRLRKCLKMGMRREAVQ 113
+CRG +C ID++ R++C CR +KCL GM++EAVQ
Sbjct: 92 TCRGQNTCAIDRNSRSRCPSCRFQKCLSTGMKKEAVQ 128
>SB_32228| Best HMM Match : zf-C4 (HMM E-Value=6.2e-23)
Length = 300
Score = 56.4 bits (130), Expect = 1e-08
Identities = 23/39 (58%), Positives = 26/39 (66%)
Frame = +3
Query: 6 CRGNRSCPIDQHHRNQCQFCRLRKCLKMGMRREAVQRGR 122
C+ CPID RNQCQ CRLRKC +M M R+AVQ R
Sbjct: 22 CKEKNDCPIDVARRNQCQACRLRKCFEMNMNRDAVQHER 60
Score = 50.8 bits (116), Expect = 6e-07
Identities = 24/53 (45%), Positives = 33/53 (62%)
Frame = +1
Query: 295 VMGIDNICELAARLLFSAVEWARNIPFFPELQVTDQVALLRLVWSELFVLNAS 453
V+ +D + E A R+L+ V+W RNIP F +L DQ L+ WSELFVL +
Sbjct: 145 VVYMDMMYESAIRVLYMTVKWVRNIPTFLDLPFRDQAILIEESWSELFVLRTA 197
>SB_56305| Best HMM Match : zf-C4 (HMM E-Value=0)
Length = 553
Score = 56.0 bits (129), Expect = 1e-08
Identities = 21/41 (51%), Positives = 31/41 (75%), Gaps = 1/41 (2%)
Frame = +3
Query: 3 SCRG-NRSCPIDQHHRNQCQFCRLRKCLKMGMRREAVQRGR 122
+CR + CPID+ HRN+CQ+CR +KC++ GM +EAV+ R
Sbjct: 233 TCRNLTKDCPIDKRHRNRCQYCRFQKCIQAGMIKEAVREDR 273
>SB_18088| Best HMM Match : zf-C4 (HMM E-Value=7.56701e-44)
Length = 1220
Score = 55.6 bits (128), Expect = 2e-08
Identities = 19/36 (52%), Positives = 28/36 (77%)
Frame = +3
Query: 3 SCRGNRSCPIDQHHRNQCQFCRLRKCLKMGMRREAV 110
+CRGN+ C I+QH RN+CQ+CR KC+K GM ++ +
Sbjct: 858 TCRGNQDCDINQHTRNRCQYCRFEKCVKSGMLKQGM 893
>SB_51757| Best HMM Match : Hormone_recep (HMM E-Value=6.4e-37)
Length = 405
Score = 54.8 bits (126), Expect = 3e-08
Identities = 25/63 (39%), Positives = 41/63 (65%)
Frame = +1
Query: 280 VQPTNVMGIDNICELAARLLFSAVEWARNIPFFPELQVTDQVALLRLVWSELFVLNASKC 459
V+P + + +NI + A RLL +++ +ARN+P F L DQ+ LL W ELF+L+A+
Sbjct: 207 VEPIHFIVSENIQDAATRLLSASIRFARNVPCFTRLPFRDQIILLEEGWKELFLLDAAYW 266
Query: 460 SMP 468
++P
Sbjct: 267 ALP 269
Score = 39.1 bits (87), Expect = 0.002
Identities = 11/31 (35%), Positives = 22/31 (70%)
Frame = +3
Query: 6 CRGNRSCPIDQHHRNQCQFCRLRKCLKMGMR 98
C+ +C + RN+C+ CR++KC+++GM+
Sbjct: 60 CKAQNACSVKTTSRNECKACRMKKCVEVGMK 90
>SB_30131| Best HMM Match : zf-C4 (HMM E-Value=8.39938e-42)
Length = 311
Score = 54.4 bits (125), Expect = 5e-08
Identities = 21/40 (52%), Positives = 29/40 (72%)
Frame = +3
Query: 3 SCRGNRSCPIDQHHRNQCQFCRLRKCLKMGMRREAVQRGR 122
+C+GN C +D+ RNQCQ CR +KCL++ M R AVQ+ R
Sbjct: 70 TCKGNGGCTVDKKRRNQCQACRFKKCLEVKMNRFAVQQER 109
>SB_4250| Best HMM Match : zf-C4 (HMM E-Value=2.3e-39)
Length = 79
Score = 53.2 bits (122), Expect = 1e-07
Identities = 20/34 (58%), Positives = 27/34 (79%)
Frame = +3
Query: 3 SCRGNRSCPIDQHHRNQCQFCRLRKCLKMGMRRE 104
SCR R+C I++ RNQC+FCRLRKC + GM++E
Sbjct: 45 SCRFQRNCVINKDKRNQCRFCRLRKCFRAGMKKE 78
>SB_12110| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 360
Score = 50.8 bits (116), Expect = 6e-07
Identities = 19/40 (47%), Positives = 31/40 (77%)
Frame = +3
Query: 3 SCRGNRSCPIDQHHRNQCQFCRLRKCLKMGMRREAVQRGR 122
+C ++SC ID+++R +CQ+CR +KCL +GM +EAV+ R
Sbjct: 49 ACVESKSCQIDKNNRIRCQYCRFQKCLALGMLKEAVREDR 88
Score = 32.3 bits (70), Expect = 0.21
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = +1
Query: 304 IDNICELAARLLFSAVEWARNIPFFPELQVTDQVALLRLVWSELFVLNASKCSMP 468
++ I EL + + + WA+ +P F ++ DQ++LL E+ +L + S P
Sbjct: 163 VEAIMELTLQEVEHVINWAKRVPGFCDVDKEDQISLLSEGLLEVLILRICQRSTP 217
>SB_20447| Best HMM Match : zf-C4 (HMM E-Value=2.09999e-41)
Length = 419
Score = 50.0 bits (114), Expect = 1e-06
Identities = 21/61 (34%), Positives = 36/61 (59%)
Frame = +1
Query: 274 PCVQPTNVMGIDNICELAARLLFSAVEWARNIPFFPELQVTDQVALLRLVWSELFVLNAS 453
P + V +D + E A RLLF +++W ++I F L DQ+ALL W+++F+L +
Sbjct: 260 PSLAGVQVFSMDYVYEFATRLLFVSIDWTQSISAFRALHKCDQIALLCKTWADIFLLGVA 319
Query: 454 K 456
+
Sbjct: 320 Q 320
Score = 49.6 bits (113), Expect = 1e-06
Identities = 19/34 (55%), Positives = 25/34 (73%)
Frame = +3
Query: 3 SCRGNRSCPIDQHHRNQCQFCRLRKCLKMGMRRE 104
+CRG+ C ID+ HRN+CQ CR KCL GM++E
Sbjct: 77 TCRGSNDCFIDKVHRNRCQKCRFVKCLTAGMKKE 110
>SB_5770| Best HMM Match : Hormone_recep (HMM E-Value=3.4e-22)
Length = 282
Score = 48.4 bits (110), Expect = 3e-06
Identities = 29/72 (40%), Positives = 38/72 (52%)
Frame = +1
Query: 250 SYPASRYSPCVQPTNVMGIDNICELAARLLFSAVEWARNIPFFPELQVTDQVALLRLVWS 429
S PAS + +ICE + L VEWA+++P F EL + DQVALLR S
Sbjct: 33 SRPASSPPESICLEKEANYSDICESMRQQLLILVEWAKHLPCFCELPLDDQVALLRAHAS 92
Query: 430 ELFVLNASKCSM 465
E VL S+ S+
Sbjct: 93 EHLVLGVSRRSL 104
>SB_9970| Best HMM Match : zf-C4 (HMM E-Value=9.4e-38)
Length = 259
Score = 45.6 bits (103), Expect = 2e-05
Identities = 15/31 (48%), Positives = 23/31 (74%)
Frame = +3
Query: 12 GNRSCPIDQHHRNQCQFCRLRKCLKMGMRRE 104
G +CP+D+ HRNQC+ CRL+KC + M ++
Sbjct: 49 GKGNCPVDKIHRNQCRSCRLKKCFDVSMNKD 79
Score = 44.0 bits (99), Expect = 6e-05
Identities = 18/32 (56%), Positives = 24/32 (75%)
Frame = +1
Query: 307 DNICELAARLLFSAVEWARNIPFFPELQVTDQ 402
+++CE AA+LLF +V+WARNIP F L DQ
Sbjct: 188 ESVCEAAAKLLFMSVKWARNIPSFMSLPFRDQ 219
>SB_58064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1027
Score = 44.0 bits (99), Expect = 6e-05
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = +3
Query: 6 CRGNRSCPIDQHHRNQCQFCRLRKCLKMGMRREAVQRGR 122
C +C +D+ RN+CQ CR+ KCL +GM++ AVQ R
Sbjct: 773 CMFRETCIVDKVLRNRCQKCRMDKCLAVGMQKSAVQYER 811
>SB_36879| Best HMM Match : Hormone_recep (HMM E-Value=0)
Length = 358
Score = 38.3 bits (85), Expect = 0.003
Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Frame = +3
Query: 3 SC-RGNRS-CPIDQHHRNQCQFCRLRKCLKMGMRREAVQR 116
SC R N++ CP+D++ R +CQ CRL++C GM V++
Sbjct: 44 SCVRSNQNQCPMDKNSRAKCQACRLQRCFDAGMVLNGVRK 83
Score = 30.3 bits (65), Expect = 0.84
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 349 VEWARNIPFFPELQVTDQVALLRLVWSELFVLNASKCSMP 468
V+WA+ +P F +L DQ+ LL EL V S+P
Sbjct: 177 VDWAKLVPGFKDLCQEDQITLLTAAGMELVVFRVIFRSIP 216
>SB_38546| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43)
Length = 506
Score = 32.7 bits (71), Expect = 0.16
Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = -3
Query: 309 VYAHDVRWLDAWTVSRGGVAPPA---VAAICTTRDM 211
VYAH VR+L AW G APP V C+TRD+
Sbjct: 168 VYAH-VRYLKAWVQGIMGAAPPTPPPVTGECSTRDL 202
>SB_11498| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 122
Score = 30.7 bits (66), Expect = 0.64
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +3
Query: 213 YLSSYISLLLRAELPRLEIQSMRPTNERHGHRQHLRARCQTAFLRRRMGEKHPLLPRT 386
Y + ++L+A +P ++ +RP E++GHR L R + + EK +L +T
Sbjct: 63 YRYELVEIMLKAGIPLAKVDVLRPFLEKYGHR--LTTRSHLSEFIPLISEKEKMLIKT 118
>SB_5110| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 109
Score = 30.7 bits (66), Expect = 0.64
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +3
Query: 213 YLSSYISLLLRAELPRLEIQSMRPTNERHGHRQHLRARCQTAFLRRRMGEKHPLLPRT 386
Y + ++L+A +P ++ +RP E++GHR L R + + EK +L +T
Sbjct: 4 YRYELVEIMLKAGIPLAKVNVLRPFLEKYGHR--LTTRSHLSEFIPLISEKEKMLIKT 59
>SB_30569| Best HMM Match : 3-alpha (HMM E-Value=6)
Length = 160
Score = 29.9 bits (64), Expect = 1.1
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 213 YLSSYISLLLRAELPRLEIQSMRPTNERHGHR 308
Y + ++L+A +P +I +RP E++GHR
Sbjct: 110 YRYELVGIMLKAGIPLAKIDVLRPLLEKYGHR 141
>SB_56020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 309
Score = 29.1 bits (62), Expect = 1.9
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +3
Query: 213 YLSSYISLLLRAELPRLEIQSMRPTNERHGHRQHLRARCQTAFLRRRMGEKHPLLPRT 386
Y + +L+A +P ++ +RP E++GHR L R + + EK +L +T
Sbjct: 68 YRYELVEKMLKAGIPLAKVDVLRPLLEKYGHR--LTTRSHLSEFIPLISEKENMLIKT 123
>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 7381
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +3
Query: 207 HPYLSSYISLL-LRAELPRLEIQSMRPTNERHGHRQHLRARCQTAFLRRRMGEK 365
H ++S + + + P +RP +RH + + ARC+ + RRR G +
Sbjct: 7154 HSHISMRVEVYGCYSNAPEASPPKLRPVIKRHRYSVQIVARCRWSIRRRRAGTR 7207
>SB_12193| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 457
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = +3
Query: 213 YLSSYISLLLRAELPRLEIQSMRPTNERHGHRQHLRARCQTAFLRRRMGEKHPLLPRT 386
Y + ++L+ +P ++ +RP E++GHR L R + + EK +L +T
Sbjct: 341 YRYELVEIMLKPGIPLAKVDVLRPFLEKYGHR--LTTRSHLSEFIPLISEKEKMLIKT 396
>SB_43276| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 426
Score = 27.9 bits (59), Expect = 4.5
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +1
Query: 205 IIHISRRTYRCY-CGRSYPASRY 270
+IH R+ Y+CY CG+ + RY
Sbjct: 367 MIHSGRKPYKCYECGKCFSRHRY 389
>SB_40929| Best HMM Match : Attractin (HMM E-Value=5.1)
Length = 566
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 371 PSSPNCKLRTKSPY*GSSGRNCSC*TPLSAP 463
PS CK +T +P + R SC T S P
Sbjct: 506 PSQARCKTKTSNPQDKQAARQASCKTKTSKP 536
>SB_3588| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 391
Score = 27.9 bits (59), Expect = 4.5
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +1
Query: 205 IIHISRRTYRCY-CGRSYPASRY 270
+IH R+ Y+CY CG+ + RY
Sbjct: 332 MIHSGRKPYKCYECGKCFSRHRY 354
>SB_44753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1379
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 329 PDCFSPPSNGRETSPSSPNCKLRTKSPY*GSSGRNCSC*TPLSA 460
P+ S P G TS ++P+ LRT SGR +C +P+ A
Sbjct: 1313 PNRVSTPKRGSPTSRNTPSRGLRTPVKTAMFSGRCSACASPIRA 1356
>SB_31180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 407
Score = 27.9 bits (59), Expect = 4.5
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -3
Query: 72 LVCRTDTGFYGAGQWGSSCFLC 7
L C+T GFYG W C +C
Sbjct: 20 LRCKTGCGFYGNPAWQGYCSVC 41
>SB_12550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 850
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 167 ELARESQAGRLRWRHSTSLDSFSSHA 90
E AR+ QA + RW +S LD +HA
Sbjct: 515 EWARKIQAEKFRWHNSQWLDMIENHA 540
>SB_58730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1014
Score = 27.1 bits (57), Expect = 7.8
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -2
Query: 172 RVNWPGSPRPGGCDGGTRPLWTASL 98
R +WP PGG GG W +SL
Sbjct: 644 RADWPYGLSPGGLPGGAMFPWESSL 668
>SB_34086| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 890
Score = 27.1 bits (57), Expect = 7.8
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -3
Query: 369 DVSRPFDGGEKQSGSELAD 313
D+S PF G KQ+G +LAD
Sbjct: 191 DISDPFKKGSKQAGFKLAD 209
>SB_23024| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 593
Score = 27.1 bits (57), Expect = 7.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 97 EEKLSKEVECLHRSRPAWDSLASS 168
+EKL KE E ++R R W+S S+
Sbjct: 484 KEKLGKEAEKINRERQQWESETST 507
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,653,198
Number of Sequences: 59808
Number of extensions: 331331
Number of successful extensions: 1065
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 982083920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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