Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0652
(470 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g41170.1 68415.m05085 F-box family protein contains Pfam PF00... 28 2.8
At4g36490.1 68417.m05181 SEC14 cytosolic factor, putative / phos... 28 3.7
At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-conta... 27 4.8
At1g34380.1 68414.m04269 5'-3' exonuclease family protein simila... 27 4.8
At5g40390.1 68418.m04899 raffinose synthase family protein simil... 27 6.4
At5g37400.1 68418.m04499 hypothetical protein contains Pfam PF04... 27 6.4
At1g77400.1 68414.m09013 expressed protein 27 6.4
At1g06920.1 68414.m00735 ovate family protein 58% similar to ova... 27 6.4
At5g56130.1 68418.m07002 transducin family protein / WD-40 repea... 27 8.5
At3g11890.2 68416.m01458 expressed protein 27 8.5
At3g11890.1 68416.m01457 expressed protein 27 8.5
At2g40770.1 68415.m05030 SNF2 domain-containing protein / helica... 27 8.5
>At2g41170.1 68415.m05085 F-box family protein contains Pfam
PF00646: F-box domain; similar to SKP1 interacting
partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 371
Score = 28.3 bits (60), Expect = 2.8
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -3
Query: 435 QFRPDEPQ*GDLVRNLQFGEEGDVSRPFDGGEKQSGSE 322
QFRP+ P +++ E G+ F GG K+ G+E
Sbjct: 318 QFRPESPWRRTVIKRKDHRETGNEENGFYGGVKKLGTE 355
>At4g36490.1 68417.m05181 SEC14 cytosolic factor, putative /
phosphoglyceride transfer protein, putative similar to
phosphatidylinositol transfer-like protein IV
(GI:14486707) [Lotus japonicus]; contains Pfam PF00650 :
CRAL/TRIO domain; contains Pfam PF03765 : CRAL/TRIO,
N-terminus; supporting cDNA gi|23463078|gb|BT000834.1|
Length = 543
Score = 27.9 bits (59), Expect = 3.7
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 46 ETSVSSAD*GNVSKWA*EEKLSKEVECLHRSRPAWD 153
E ++ D + EEK SKEVE + + PAW+
Sbjct: 333 EKTIPEEDDSTTEPASEEEKASKEVEIVPAAHPAWN 368
>At2g26890.1 68415.m03226 DNAJ heat shock N-terminal
domain-containing protein contains Pfam profile PF00226:
DnaJ domain
Length = 2554
Score = 27.5 bits (58), Expect = 4.8
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +1
Query: 154 SLASSP*ATVTPAPDSTIIHISRRTYRCYCGRSYPASRY-SPCVQPTNVMGID 309
S AS+P A+ P DSTI +S+ Y + + A+ + P ++V+G D
Sbjct: 818 SEASNPQASAFPGVDSTIAGVSQNGYPAFASVTTNANGHEQPETNASDVVGSD 870
>At1g34380.1 68414.m04269 5'-3' exonuclease family protein similar
to DNA polymerase type I [Rhodothermus sp. 'ITI 518']
gi|4090935|gb|AAC98908 ; contains Pfam profile PF02739:
5'-3' exonuclease, N-terminal resolvase-like domain
Length = 264
Score = 27.5 bits (58), Expect = 4.8
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -1
Query: 155 ESQAGRLRWRHSTSLDSFSSHAHFETF 75
++Q R +W S+S SFSSH+ ETF
Sbjct: 22 KTQPSRTKWVSSSS-SSFSSHSSVETF 47
>At5g40390.1 68418.m04899 raffinose synthase family protein similar
to galactinol-raffinose galactosyltransferase [Vigna
angularis] GI:6634701, seed imbibition protein
GB:AAA32975 GI:167100 from [Hordeum vulgare]; contains
Pfam profile PF05691: Raffinose synthase or seed
imbibition protein Sip1
Length = 783
Score = 27.1 bits (57), Expect = 6.4
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -3
Query: 408 GDLVRNLQFGEEGDVSRPFDGGEKQ-SGSELADVVYAH 298
G + Q GE+ DV+ + G + +GSE +VY H
Sbjct: 149 GSFRSSFQSGEDDDVAVCVESGSTEVTGSEFRQIVYVH 186
>At5g37400.1 68418.m04499 hypothetical protein contains Pfam PF04510
: Family of unknown function (DUF577)); common family
comprised of At5g37410, At5g37400, At5g37920,
At5g37460, At5g37650, At5g37470, At5g37420, At5g37430
Length = 623
Score = 27.1 bits (57), Expect = 6.4
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +1
Query: 256 PASRYSPCVQPTNVMGIDNICELAARL-LFSAVEWARNIPFFPELQVTDQVALLRLVWSE 432
PA +SP +G+D++C+L L S VE R + ++A+ RL E
Sbjct: 316 PAFEFSPFRNENKYLGVDDVCDLEDILDALSPVEIMRKVSVGQVPNRLREIAITRLY--E 373
Query: 433 LF 438
LF
Sbjct: 374 LF 375
>At1g77400.1 68414.m09013 expressed protein
Length = 232
Score = 27.1 bits (57), Expect = 6.4
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -3
Query: 348 GGEKQSGSELADVVYAHDVRWLDAWTV-SRGGVAP 247
G ++SGS + Y D+ + WTV SR V+P
Sbjct: 168 GSRRKSGSRSENDYYCSDMETMSPWTVSSRRSVSP 202
>At1g06920.1 68414.m00735 ovate family protein 58% similar to ovate
protein (GI:23429649) [Lycopersicon esculentum];
contains TIGRFAM TIGR01568 : uncharacterized
plant-specific domain TIGR01568
Length = 315
Score = 27.1 bits (57), Expect = 6.4
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 350 SNGRETSPSSPNCKLRTKSP 409
S+GR +S SP KLR +SP
Sbjct: 204 SSGRRSSAKSPRIKLRARSP 223
>At5g56130.1 68418.m07002 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to beta transducin-like protein HET-E2C*4
(GI:17225206) [Podospora anserina]
Length = 315
Score = 26.6 bits (56), Expect = 8.5
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +1
Query: 214 ISRRTYRCYCGRSYPASRYSPCVQPTNVMGIDNICELAARLLFSAVEW-ARNIPF 375
++ T CYC P RY +++ + +I ++ F+ +EW R I F
Sbjct: 187 LTAHTAGCYCIAIDPKGRYFAVGSADSLVSLWDISDMLCLRTFTKLEWPVRTISF 241
>At3g11890.2 68416.m01458 expressed protein
Length = 527
Score = 26.6 bits (56), Expect = 8.5
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +2
Query: 23 LPH*PAP*KPVSVLQTKEMSQNGHEKRSCPKRSSASIAAARPGTPWPVH 169
LP P P + LQ SQ+ E R+ ++++ AAA P P P H
Sbjct: 229 LPSLPVP--ELCTLQKPATSQSQAELRANTRKATLVHAAAMPSLPVPEH 275
>At3g11890.1 68416.m01457 expressed protein
Length = 500
Score = 26.6 bits (56), Expect = 8.5
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +2
Query: 23 LPH*PAP*KPVSVLQTKEMSQNGHEKRSCPKRSSASIAAARPGTPWPVH 169
LP P P + LQ SQ+ E R+ ++++ AAA P P P H
Sbjct: 229 LPSLPVP--ELCTLQKPATSQSQAELRANTRKATLVHAAAMPSLPVPEH 275
>At2g40770.1 68415.m05030 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger (C3HC4 type RING
finger) family protein low similarity to SP|P36607 DNA
repair protein rad8 {Schizosaccharomyces pombe};
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00628: PHD-finger, PF00097: Zinc finger, C3HC4
type (RING finger)
Length = 1648
Score = 26.6 bits (56), Expect = 8.5
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Frame = +1
Query: 97 EEKLSKEVECL-----HRSRPAWDSLASSP*ATVTPAPDSTIIHISRRTYRCYCGRSYPA 261
E L K VE L HR +PA D ++ S ++VT ++ + + R C CG +
Sbjct: 347 EMGLGKTVELLACIFSHR-KPAEDEISVSNGSSVTDVLNAGLRRLKRERVECICGAVSES 405
Query: 262 SRY 270
+Y
Sbjct: 406 HKY 408
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,790,574
Number of Sequences: 28952
Number of extensions: 221990
Number of successful extensions: 661
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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