Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0651
         (536 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    55   5e-10
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    54   1e-09
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    54   1e-09
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    40   1e-05
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    35   4e-04
X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          23   1.3  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           23   1.3  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   9.1  

>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 54.8 bits (126), Expect = 5e-10
 Identities = 27/61 (44%), Positives = 37/61 (60%)
 Frame = +1

Query: 274 PCVQPTNVMGIDNICELAARLLFSAVEWARNIPFFPELQGTDQXALLRVVWSELFVLNAS 453
           P + P  ++    ICE AA+L+F  V+W R+IP F  L  +DQ  LL   W +LFVL A+
Sbjct: 186 PPIFPPTMINPSAICESAAQLIFMNVQWVRSIPAFTCLPLSDQLLLLEESWLDLFVLGAA 245

Query: 454 Q 456
           Q
Sbjct: 246 Q 246



 Score = 40.7 bits (91), Expect = 8e-06
 Identities = 15/28 (53%), Positives = 21/28 (75%)
 Frame = +3

Query: 30  IDQHHRNXCQFCRXRKCLKMGMRREAVQ 113
           ID+ HRN C+ CR +KC  +GM ++AVQ
Sbjct: 84  IDKTHRNQCRACRLKKCQNVGMNKDAVQ 111


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 53.6 bits (123), Expect = 1e-09
 Identities = 21/37 (56%), Positives = 28/37 (75%)
 Frame = +3

Query: 3   SCRGNRSXPIDQHHRNXCQFCRXRKCLKMGMRREAVQ 113
           +CR  ++  ID+  RN CQ+CR +KCL MGM+REAVQ
Sbjct: 121 ACREEKNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQ 157



 Score = 51.2 bits (117), Expect = 6e-09
 Identities = 23/54 (42%), Positives = 32/54 (59%)
 Frame = +1

Query: 304 IDNICELAARLLFSAVEWARNIPFFPELQGTDQXALLRVVWSELFVLNASQCSM 465
           ++NIC+   + LF  V+WA+ +P F  L  TDQ  LLR  W+EL +   S  SM
Sbjct: 211 VNNICQATHKQLFQLVQWAKLVPHFTSLPLTDQVQLLRAGWNELLIAAFSHRSM 264


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 53.6 bits (123), Expect = 1e-09
 Identities = 29/61 (47%), Positives = 37/61 (60%)
 Frame = +1

Query: 274 PCVQPTNVMGIDNICELAARLLFSAVEWARNIPFFPELQGTDQXALLRVVWSELFVLNAS 453
           P   PT ++    ICE AA+LLF  V+W R+IP F  L  +DQ  LL   W +LFVL A+
Sbjct: 187 PIFAPT-MINPSAICESAAQLLFMNVQWVRSIPAFTCLPLSDQLLLLEESWLDLFVLGAA 245

Query: 454 Q 456
           Q
Sbjct: 246 Q 246



 Score = 40.7 bits (91), Expect = 8e-06
 Identities = 15/28 (53%), Positives = 21/28 (75%)
 Frame = +3

Query: 30  IDQHHRNXCQFCRXRKCLKMGMRREAVQ 113
           ID+ HRN C+ CR +KC  +GM ++AVQ
Sbjct: 84  IDKTHRNQCRACRLKKCQNVGMNKDAVQ 111


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 39.9 bits (89), Expect = 1e-05
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +3

Query: 6   CRGNRSXPIDQHHRNXCQFCRXRKCLKMGMRREAV 110
           C+   +  ID + R  CQ CR +KCL +GMR E V
Sbjct: 224 CKYGNNCEIDMYMRRKCQECRLKKCLSVGMRPECV 258


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 35.1 bits (77), Expect = 4e-04
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 6   CRGNRSXPIDQHHRNXCQFCRXRKCLKMGMRR 101
           C+ N    I++ +R  C+ CR RKCL +GM +
Sbjct: 42  CKNNGECVINKKNRTACKACRLRKCLLVGMSK 73


>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +3

Query: 201 NNHPYLSSYISLXLRAELPRLEIQSMRPTNERHGHRQHLRAR 326
           N  PY+SS + L    E+   + Q  +PT  +     +  A+
Sbjct: 58  NAPPYMSSVLQLPTVTEIQETQPQRTKPTAGKRARTAYTSAQ 99


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +3

Query: 201 NNHPYLSSYISLXLRAELPRLEIQSMRPTNERHGHRQHLRAR 326
           N  PY+SS + L    E+   + Q  +PT  +     +  A+
Sbjct: 49  NAPPYMSSVLQLPTVTEIQETQPQRTKPTAGKRARTAYTSAQ 90


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 355  WARNIPFFPELQGTDQXALLRVV 423
            WA ++  F  L G ++  LLR +
Sbjct: 2163 WALDLDDFKNLCGCEEYPLLRTI 2185


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,534
Number of Sequences: 336
Number of extensions: 2264
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13097125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)