Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0651
         (536 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41170.1 68415.m05085 F-box family protein contains Pfam PF00...    28   4.5  
At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-conta...    27   7.9  
At1g77400.1 68414.m09013 expressed protein                             27   7.9  

>At2g41170.1 68415.m05085 F-box family protein contains Pfam
           PF00646: F-box domain; similar to SKP1 interacting
           partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 371

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 435 QFRPDDPQ*GXLVRTLQFGEEGDVSRPFDGGEKQSGSE 322
           QFRP+ P    +++     E G+    F GG K+ G+E
Sbjct: 318 QFRPESPWRRTVIKRKDHRETGNEENGFYGGVKKLGTE 355


>At2g26890.1 68415.m03226 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profile PF00226:
           DnaJ domain
          Length = 2554

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +1

Query: 154 SLASSP*ATVTPAPDSTIIHISRRTYRXYCGRSYPASRY-SPCVQPTNVMGID 309
           S AS+P A+  P  DSTI  +S+  Y  +   +  A+ +  P    ++V+G D
Sbjct: 818 SEASNPQASAFPGVDSTIAGVSQNGYPAFASVTTNANGHEQPETNASDVVGSD 870


>At1g77400.1 68414.m09013 expressed protein
          Length = 232

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 348 GGEKQSGSELADVVYAHDVRWLDAWTV-SRGGVAP 247
           G  ++SGS   +  Y  D+  +  WTV SR  V+P
Sbjct: 168 GSRRKSGSRSENDYYCSDMETMSPWTVSSRRSVSP 202


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,584,081
Number of Sequences: 28952
Number of extensions: 225848
Number of successful extensions: 551
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)