Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0650
         (430 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g04460.1 68418.m00443 expressed protein                             27   7.1  
At2g39740.1 68415.m04880 expressed protein                             27   7.1  

>At5g04460.1 68418.m00443 expressed protein
          Length = 863

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 426 RHSKHRSSFSWNPLND 379
           RHS HRS   W  +ND
Sbjct: 727 RHSMHRSEIEWEVMND 742


>At2g39740.1 68415.m04880 expressed protein
          Length = 474

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 259 P*QGQYFAECT-TGLESRSTERSGEKPLRTVSAG 357
           P QGQ +   T T  + +S  +SG +PL+  SAG
Sbjct: 389 PVQGQTWPVITQTQTQQKSPYKSGNRPLKNTSAG 422


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,621,915
Number of Sequences: 28952
Number of extensions: 128092
Number of successful extensions: 225
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)