Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0649
(459 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23) 71 6e-13
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 2e-12
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 1e-11
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 46 1e-05
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 41 4e-04
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 41 6e-04
SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11) 40 0.001
SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 38 0.003
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.005
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.016
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.037
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.086
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 33 0.11
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 33 0.11
SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.11
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 33 0.11
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 33 0.11
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 32 0.26
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 31 0.35
SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 31 0.46
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.46
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.61
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.61
SB_57434| Best HMM Match : LRR_1 (HMM E-Value=3.9e-13) 30 1.1
SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_44482| Best HMM Match : RRM_1 (HMM E-Value=0.19) 29 1.4
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07) 29 1.8
SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38) 29 2.4
SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33) 29 2.4
SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15) 29 2.4
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 29 2.4
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.2
SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28) 27 5.6
SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_13046| Best HMM Match : La (HMM E-Value=5e-23) 27 7.5
SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_49820| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_1834| Best HMM Match : efhand (HMM E-Value=1e-06) 27 9.9
>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
Length = 201
Score = 70.5 bits (165), Expect = 6e-13
Identities = 28/53 (52%), Positives = 41/53 (77%)
Frame = +2
Query: 83 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 241
T++YVG L +LER F+K+G+L+ VWVA NPPGFAF+E+E+ ++AE+A
Sbjct: 4 TKLYVGNLGRNADSSELERAFEKFGRLSKVWVARNPPGFAFVEYEDYRDAEEA 56
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 68.9 bits (161), Expect = 2e-12
Identities = 28/53 (52%), Positives = 39/53 (73%)
Frame = +2
Query: 83 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 241
+RVY+G + + K ++EREF+ +G L VWVA NPPGFAF FE+ ++AEDA
Sbjct: 2 SRVYIGNIGDNASKREIEREFETFGPLRDVWVARNPPGFAFCVFEDRRDAEDA 54
>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 66.5 bits (155), Expect = 1e-11
Identities = 28/53 (52%), Positives = 37/53 (69%)
Frame = +2
Query: 83 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 241
T+VY+G L + K ++E EF YG L VWVA NPPGFAF F++ ++AEDA
Sbjct: 32 TKVYIGSLGDNASKREIENEFGYYGPLKDVWVARNPPGFAFCIFDDRRDAEDA 84
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 46.4 bits (105), Expect = 1e-05
Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Frame = +2
Query: 71 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALNPPGFAFIEFENLQEAED 238
+S RVYVG L + ++++DL F KYG + V + PP FAF+EFE+ ++AED
Sbjct: 257 NSNDCRVYVGNLPQDVREKDLHDIFYKYGHIADVDLKNRRGAGPP-FAFVEFEDPRDAED 315
Query: 239 A 241
A
Sbjct: 316 A 316
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 41.1 bits (92), Expect = 4e-04
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 5/55 (9%)
Frame = +2
Query: 86 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAE 235
+++VGGL KE L+ F KYG+L V + ++ P GFAF++F++ EA+
Sbjct: 30 KLFVGGLSYETTKESLKEYFSKYGELVGVDIKMDALTGRPRGFAFVQFKHQSEAD 84
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 40.7 bits (91), Expect = 6e-04
Identities = 20/52 (38%), Positives = 33/52 (63%)
Frame = +2
Query: 86 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 241
RVY+G L G ++D+ R F YG+L + + N + F+EFE+ ++A+DA
Sbjct: 4 RVYLGRLPYGTTEDDVRRFFRSYGRLRDINLKNN---YGFVEFEDDRDADDA 52
>SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/55 (34%), Positives = 33/55 (60%)
Frame = +2
Query: 74 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAED 238
S TRVY G L ++ DLE+ YG++ + + L G+ F+EF++ ++A+D
Sbjct: 2 SRSTRVYFGRLPRDCRERDLEKFVRGYGRVREISMKL---GYGFVEFDDYRDADD 53
>SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11)
Length = 67
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/52 (36%), Positives = 32/52 (61%)
Frame = +2
Query: 86 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 241
RVY+G L G +++D+++ F YG+ + L G+ F+EF+ +AEDA
Sbjct: 4 RVYLGRLPYGTREDDVKKFFYTYGRFKIREIILK-DGYGFVEFDYSDDAEDA 54
>SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 39.5 bits (88), Expect = 0.001
Identities = 23/58 (39%), Positives = 35/58 (60%)
Frame = +2
Query: 68 MSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 241
M+S GT+++VG L + K DLE F YGKL + + FIE+E+ ++AE+A
Sbjct: 1 MASRGTQLFVGRLSKETKLRDLENVFYLYGKLLRCDL---KTAYGFIEYEDPRDAEEA 55
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 38.3 bits (85), Expect = 0.003
Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Frame = +2
Query: 86 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSA 250
R+Y+ + + ++D++ F+ +GK+ ++ P G+ FIE+EN Q A DA ++
Sbjct: 200 RIYIASVHPDLLEDDIKSVFEAFGKVVHCSLSKEPMTGKHKGYGFIEYENQQSANDAIAS 259
Query: 251 M 253
M
Sbjct: 260 M 260
>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 37.5 bits (83), Expect = 0.005
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Frame = +2
Query: 77 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDA 241
G T + V L EDL++ F KYG L +++ + GFAF+ F ++AEDA
Sbjct: 14 GMTSLKVDNLTYRTTVEDLKQVFKKYGDLGDIYIPRDRNTHESRGFAFVRFYEKRDAEDA 73
Query: 242 CSAM 253
M
Sbjct: 74 MDCM 77
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 35.9 bits (79), Expect = 0.016
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Frame = +2
Query: 89 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAM 253
VYVG L + DL + F++YGK+ V + + G AFI F + Q A++A +A+
Sbjct: 12 VYVGNLPYSLTNSDLHKVFERYGKVVKVTILRDKETRESRGVAFILFIDRQSAQNAVAAV 71
>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 34.7 bits (76), Expect = 0.037
Identities = 20/57 (35%), Positives = 31/57 (54%)
Frame = +2
Query: 83 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAM 253
TR++VGGL I +LEREFD++G + + A+I +++L A A M
Sbjct: 318 TRLWVGGLGPWISIPELEREFDRFGAIRRIDYR-KGGDHAYILYDSLDAASVAAREM 373
Score = 32.3 bits (70), Expect = 0.20
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Frame = +2
Query: 89 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSAM 253
++VG L GI +DL F+K+G + V + G +AF++F +L A A AM
Sbjct: 239 LFVGNLETGISCQDLRLSFEKFGVVLDVDIKRPARGQGNTYAFVKFADLDVAAKAKCAM 297
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 33.5 bits (73), Expect = 0.086
Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Frame = +2
Query: 80 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDAC 244
G ++V + E +++D+ F YG++ ++ V L+ G+A +E+E +EA+ A
Sbjct: 292 GWILFVTNIHEEAQEDDIHELFSDYGEIKNLHVNLDRRTGFIKGYALVEYETFKEAQSAL 351
Query: 245 SAM 253
A+
Sbjct: 352 EAL 354
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 33.1 bits (72), Expect = 0.11
Identities = 16/55 (29%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Frame = +2
Query: 89 VYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALNPPGFAFIEFENLQEAEDA 241
++VG L E I++ED+ + F +YG++ SV + + +F++F +++ A A
Sbjct: 8 LWVGNLPENIREEDIVKHFTRYGRVESVKILPKRSAEGGRASFVDFVDIRSATKA 62
Score = 32.7 bits (71), Expect = 0.15
Identities = 15/55 (27%), Positives = 30/55 (54%)
Frame = +2
Query: 89 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAM 253
++VGG+ + ++ +ER F +YG++ V V A + F+++ A A + M
Sbjct: 330 IWVGGVTNSLSEQQVERHFGRYGRVTKV-VINRVTNQALVSFDSVDSATIAHAQM 383
Score = 30.3 bits (65), Expect = 0.80
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +2
Query: 77 GGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG--FAFIEFENLQEAEDA 241
G TR ++VG + + DL+ F++YG++ V + P +AF++F L A A
Sbjct: 246 GCTRTLFVGNIEKTTTYGDLKEAFERYGEVIDVDIKKQPGNNPYAFVQFAELSSAIQA 303
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 33.1 bits (72), Expect = 0.11
Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +2
Query: 86 RVYVGGLV-EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 241
R+++G L + I ++DLE F ++GK+ + N F F++FE + A++A
Sbjct: 47 RIFIGNLATDKIARQDLEEIFSRHGKVLGCSLHAN---FGFVQFETEKGADEA 96
>SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 33.1 bits (72), Expect = 0.11
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Frame = +2
Query: 86 RVYVGGLVEGIKKED--------LEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 241
+++VGGL E KED LE + DK + GFAF+E N +A++
Sbjct: 109 KIFVGGLPEDATKEDIQEAIESLLEEKVDKVDLIMKKEDETKHRGFAFVELNNEDQADEL 168
Query: 242 C 244
C
Sbjct: 169 C 169
Score = 26.6 bits (56), Expect = 9.9
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Frame = +2
Query: 86 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEF 214
+++VGGL E L F+ YG+L V V + GF ++ F
Sbjct: 15 KLFVGGLNRETTNETLREYFEAYGELTDVVVICDSATKKSRGFGYVTF 62
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 33.1 bits (72), Expect = 0.11
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Frame = +2
Query: 83 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 247
T++YV L + K+ ++ F YG++ +V + + GFA++E+ + +E E A
Sbjct: 1157 TKLYVAHLTRNVNKDHVQEIFSVYGRVKTVDLPTDRTNNLSRGFAYVEYVDPEECEKALK 1216
Query: 248 AM 253
M
Sbjct: 1217 HM 1218
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 33.1 bits (72), Expect = 0.11
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Frame = +2
Query: 83 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSA 250
T VYV + + E ++ + GK+ S+ V +P G F F+ FE +EAE+A +
Sbjct: 109 TNVYVKNFGDDMDDEQMKEICAEAGKIVSLKVMTDPEGKSKGFGFVSFETPEEAEEAVNV 168
Query: 251 M 253
+
Sbjct: 169 L 169
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 31.9 bits (69), Expect = 0.26
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Frame = +2
Query: 83 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACS 247
T +Y+ GL +DL R KYG + S L+ G+ F++FE+ A+ A +
Sbjct: 100 TNLYIRGLKANTTDDDLVRLCHKYGTIISTKAILDKDTNLCKGYGFVDFESPISAQKAVA 159
Query: 248 AMM 256
A++
Sbjct: 160 ALV 162
Score = 27.9 bits (59), Expect = 4.3
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Frame = +2
Query: 83 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVA----LNPPGFAFIEFENLQEAE 235
T +Y+ L + + LE F KYGK+ S + N G F E+ ++ E
Sbjct: 179 TNLYIQNLPQNCDEAMLENMFSKYGKVISTRILRDKDTNSKGVGFARMESAEKCE 233
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 31.5 bits (68), Expect = 0.35
Identities = 14/46 (30%), Positives = 28/46 (60%)
Frame = +2
Query: 104 LVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 241
L +++ D+E+ YGK+ + + G+ F+EF++ ++AEDA
Sbjct: 696 LPRDVRESDVEKFLRGYGKIRDISLKR---GYGFVEFDDHRDAEDA 738
>SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1572
Score = 31.1 bits (67), Expect = 0.46
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +2
Query: 98 GGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 241
GGL+ G+ +E + R F YG L V V L ++F+ +++ A +A
Sbjct: 55 GGLMCGVDRESITRVFSLYGTLERV-VMLPQRSYSFVSYKSHNNALNA 101
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 31.1 bits (67), Expect = 0.46
Identities = 18/53 (33%), Positives = 30/53 (56%)
Frame = +2
Query: 83 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 241
T +YVGGL + ++DL F ++G+L S+ + + AF+ F + AE A
Sbjct: 304 TTLYVGGLEGKVTEQDLRDHFYQFGELRSISM-VPRQNCAFVCFTSRAAAEAA 355
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 30.7 bits (66), Expect = 0.61
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Frame = +2
Query: 86 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVA----LNPPGFAFIEFENLQEAEDACSAM 253
+ Y+G L + + DL+ F +Y ++ ++ P GFAF+ F + + EDA + +
Sbjct: 231 KCYIGNLDFKVNEADLQDRFSRYDVVDVQVISDRETQRPRGFAFVTFGSKKNMEDAINEL 290
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 30.7 bits (66), Expect = 0.61
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +2
Query: 83 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFI 208
T VYVG L +K +L++ F +YG + V + G+AFI
Sbjct: 615 TTVYVGNLPPDVKDYELQQMFSQYGSILETKVFAD-KGYAFI 655
>SB_57434| Best HMM Match : LRR_1 (HMM E-Value=3.9e-13)
Length = 337
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +2
Query: 89 VYVGGLVEGIKKEDLEREFDKYGKLNSV 172
V+VG L +KK+ L++ F KYG++ SV
Sbjct: 23 VFVGNLPLTLKKKALKKYFSKYGEVESV 50
>SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 71 SSGGTRVYVGGLVEGIKKEDLEREFDKYG 157
S+ +V++GGL G +EDL+ F YG
Sbjct: 198 SANDGKVFIGGLAFGTTEEDLKEYFSTYG 226
>SB_44482| Best HMM Match : RRM_1 (HMM E-Value=0.19)
Length = 486
Score = 29.5 bits (63), Expect = 1.4
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 89 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 196
VYVG + + K+D+ R F KYG + V V G
Sbjct: 372 VYVGKISDETHKDDVWRRFRKYGPIEKVTVHFRDNG 407
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 29.1 bits (62), Expect = 1.8
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Frame = +2
Query: 68 MSSGGTRVYVGGLVEGIKKEDLEREFDKYGK-LNSVWVALNPP------GFAFIEFENLQ 226
+S +R++VG + + K+++ EF K L+ V V L+ GFAF+E+E+ Q
Sbjct: 228 ISVANSRLFVGSIPKTKSKQEILEEFSKVTNGLDDVIVYLSADQKGKNRGFAFLEYESHQ 287
Query: 227 EA 232
A
Sbjct: 288 AA 289
Score = 26.6 bits (56), Expect = 9.9
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Frame = +2
Query: 83 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDA 241
++V++G + +++L F++ G + + ++P GFAF F N EA++A
Sbjct: 152 SQVFIGKVPRDCFEDELIPVFEECGHIYDFRLMIDPISGLTKGFAFCTFSNKDEAQNA 209
>SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07)
Length = 97
Score = 29.1 bits (62), Expect = 1.8
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Frame = +2
Query: 125 EDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAM 253
ED+ F++YG + VWV + G +++F A AC M
Sbjct: 37 EDIRSAFEQYGTIEDVWVVKDKATKENRGVCYVKFVKASSAALACEEM 84
>SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 241
Score = 28.7 bits (61), Expect = 2.4
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Frame = +2
Query: 89 VYVGGLVEGIKKEDLERE----FDKYGKLNSVWV--ALNPPGFAFIEFENLQEAEDACSA 250
+Y+ L E IKKE+L++ F ++G + + L G AF+ F+++ A +A +
Sbjct: 9 IYIKNLNEKIKKEELKKSLYAIFSQFGPILDIVALKTLKMRGQAFVVFKDIGSATNALRS 68
Query: 251 M 253
M
Sbjct: 69 M 69
>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
Length = 496
Score = 28.7 bits (61), Expect = 2.4
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 12/66 (18%)
Frame = +2
Query: 86 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL---------NPP---GFAFIEFENLQE 229
+++VGGL +ED++ F+ + N + + NP GFAF+ F+N +
Sbjct: 140 KIFVGGLASTTVEEDIKEYFNSLCRKNGMGEVIDVDLKRDRDNPKRIRGFAFVTFDNDEI 199
Query: 230 AEDACS 247
E C+
Sbjct: 200 VEKVCA 205
>SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)
Length = 662
Score = 28.7 bits (61), Expect = 2.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 86 RVYVGGLVEGIKKEDLEREFDKYGKL 163
+V++G L G+K D+ F KYG +
Sbjct: 358 QVFIGNLPSGVKDADVNEVFSKYGTI 383
>SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15)
Length = 145
Score = 28.7 bits (61), Expect = 2.4
Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Frame = +2
Query: 89 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL----NPPGFAFIEFENLQEAEDACSAMM 256
+Y+ I+K LE F YG + + + GF ++ +EN + A+ A +
Sbjct: 65 IYIRDFRPDIRKSSLESVFGPYGAIEDLSIIRTQTGKSKGFGYVTYENAESAQRALAGTH 124
Query: 257 VL 262
++
Sbjct: 125 II 126
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 28.7 bits (61), Expect = 2.4
Identities = 8/27 (29%), Positives = 20/27 (74%)
Frame = +2
Query: 86 RVYVGGLVEGIKKEDLEREFDKYGKLN 166
++++GGL +ED+++ F ++GK++
Sbjct: 184 KIFIGGLSTNTSEEDMKKYFSQFGKVS 210
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 28.3 bits (60), Expect = 3.2
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Frame = +2
Query: 89 VYVGGLVEGIKKEDLERE-FDKYGKLNSVWVALNPP-----GFAFIEFENLQEAE 235
++V L K L +E F + G + VA+NP GFAF+++ +EAE
Sbjct: 207 LFVDRLPRDFKNGGLIKELFSQTGNVTFAQVAINPANGGSRGFAFVDYATAEEAE 261
>SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)
Length = 440
Score = 27.5 bits (58), Expect = 5.6
Identities = 16/56 (28%), Positives = 30/56 (53%)
Frame = +2
Query: 86 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAM 253
+VY G L ++DLE +GK+ V G+A++ F+ ++A+ A +A+
Sbjct: 4 KVYCGRLPATATEKDLENLVKVFGKVREVDF---KEGYAYVVFKENKDADRAVAAL 56
>SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 834
Score = 27.1 bits (57), Expect = 7.5
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = -1
Query: 246 LHASSASCKFSNSMKAKPGGFSATQTEFSFPYLSNSRSRSSFLIPST 106
L+ S+ CK S+ K+ P S++ + S+ Y S+ +SSFL S+
Sbjct: 745 LYKCSSLCKSSSLYKSSPLHKSSSLYKSSYLYKSSYLYKSSFLYKSS 791
>SB_13046| Best HMM Match : La (HMM E-Value=5e-23)
Length = 442
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +2
Query: 194 GFAFIEFENLQEAE 235
GFAFIEFE+ Q+AE
Sbjct: 130 GFAFIEFESKQQAE 143
>SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1103
Score = 26.6 bits (56), Expect = 9.9
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Frame = +2
Query: 77 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN--PPGFAFIEFENLQEAEDACSA 250
GG ++V L + DL+ F +YGK+ + N PG + +E+A
Sbjct: 347 GGKSLWVANLSSITRAADLKTRFSQYGKVVGAKIVTNSKAPGAQCFGLVTMTTSEEAAKC 406
Query: 251 MMVL 262
+ L
Sbjct: 407 IQHL 410
>SB_49820| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 26.6 bits (56), Expect = 9.9
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 144 NSRSRSSFLIPSTRPPTYTRVPPELMV 64
N SRS+FL+P+ PT+ +V +L V
Sbjct: 110 NPGSRSAFLLPTMAYPTFIQVMRDLKV 136
>SB_1834| Best HMM Match : efhand (HMM E-Value=1e-06)
Length = 659
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 275 APNISVPSSRYTHLPPPASSQ 213
AP+ VPSS H+P P ++Q
Sbjct: 338 APSYEVPSSEVFHMPRPGANQ 358
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,807,755
Number of Sequences: 59808
Number of extensions: 200807
Number of successful extensions: 754
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -