Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0649
(459 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 65 2e-11
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 65 2e-11
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 62 1e-10
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 62 2e-10
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 50 6e-07
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 50 6e-07
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 50 6e-07
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 50 6e-07
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 50 6e-07
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 48 4e-06
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 45 3e-05
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 44 4e-05
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 44 5e-05
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 44 5e-05
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 44 7e-05
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 44 7e-05
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 44 7e-05
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 42 2e-04
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 42 2e-04
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 42 3e-04
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 41 3e-04
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 41 3e-04
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 41 3e-04
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 41 5e-04
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 40 8e-04
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 40 8e-04
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 40 8e-04
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 39 0.001
At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing ... 39 0.002
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 39 0.002
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 38 0.004
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 38 0.004
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 37 0.006
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 37 0.006
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 37 0.008
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 37 0.008
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 37 0.008
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 36 0.010
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 36 0.013
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 36 0.013
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 36 0.013
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 36 0.013
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 36 0.013
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 36 0.017
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 36 0.017
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 36 0.017
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 35 0.023
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 35 0.023
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 35 0.023
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 35 0.023
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 35 0.023
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 35 0.030
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 34 0.040
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 34 0.053
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 34 0.053
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 33 0.070
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 33 0.070
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 33 0.070
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 33 0.070
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 33 0.070
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 33 0.093
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 33 0.093
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 33 0.12
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 33 0.12
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 33 0.12
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 32 0.16
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 32 0.16
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 32 0.16
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 32 0.16
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 32 0.16
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 32 0.16
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 32 0.21
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 32 0.21
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 32 0.21
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 32 0.21
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 31 0.28
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 31 0.28
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 31 0.28
At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil... 31 0.37
At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil... 31 0.37
At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing ... 31 0.37
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 31 0.37
At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing ... 31 0.37
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 31 0.37
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 31 0.49
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 31 0.49
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 31 0.49
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 31 0.49
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 30 0.65
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 30 0.65
At3g25150.1 68416.m03140 nuclear transport factor 2 (NTF2) famil... 30 0.65
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 30 0.86
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 30 0.86
At3g61130.1 68416.m06841 glycosyl transferase family 8 protein c... 30 0.86
At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B, pu... 30 0.86
At1g06960.2 68414.m00741 small nuclear ribonucleoprotein U2B, pu... 30 0.86
At1g06960.1 68414.m00740 small nuclear ribonucleoprotein U2B, pu... 30 0.86
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 29 1.1
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 29 1.1
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 29 1.5
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 29 1.5
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 29 1.5
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 29 2.0
At3g27700.2 68416.m03459 RNA recognition motif (RRM)-containing ... 29 2.0
At3g27700.1 68416.m03458 RNA recognition motif (RRM)-containing ... 29 2.0
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil... 29 2.0
At1g79880.3 68414.m09332 La domain-containing protein contains P... 29 2.0
At1g79880.2 68414.m09331 La domain-containing protein contains P... 29 2.0
At1g79880.1 68414.m09333 La domain-containing protein contains P... 29 2.0
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 28 2.6
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 28 2.6
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 28 2.6
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 28 2.6
At1g05510.1 68414.m00563 expressed protein 28 2.6
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 28 3.5
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 28 3.5
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 28 3.5
At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ... 28 3.5
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 28 3.5
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 28 3.5
At2g47310.1 68415.m05906 flowering time control protein-related ... 28 3.5
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 27 4.6
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 27 4.6
At3g08670.1 68416.m01007 expressed protein 27 4.6
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 27 4.6
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 27 4.6
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 27 4.6
At5g56180.2 68418.m07009 actin-related protein, putative (ARP8) ... 27 6.1
At5g56180.1 68418.m07008 actin-related protein, putative (ARP8) ... 27 6.1
At5g50170.1 68418.m06213 C2 domain-containing protein / GRAM dom... 27 6.1
At5g27640.1 68418.m03311 eukaryotic translation initiation facto... 27 6.1
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 27 6.1
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 27 6.1
At3g14450.1 68416.m01831 RNA-binding protein, putative contains ... 27 6.1
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 27 6.1
At5g65770.1 68418.m08276 nuclear matrix constituent protein-rela... 27 8.1
At5g37720.1 68418.m04541 RNA and export factor-binding protein, ... 27 8.1
At4g25110.1 68417.m03612 latex-abundant family protein (AMC2) / ... 27 8.1
At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-bindi... 27 8.1
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 27 8.1
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 27 8.1
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 27 8.1
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 27 8.1
At2g20720.1 68415.m02433 pentatricopeptide (PPR) repeat-containi... 27 8.1
At1g53650.1 68414.m06105 RNA-binding protein, putative similar t... 27 8.1
At1g26400.1 68414.m03220 FAD-binding domain-containing protein s... 27 8.1
At1g03020.1 68414.m00274 glutaredoxin family protein contains IN... 27 8.1
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 65.3 bits (152), Expect = 2e-11
Identities = 29/57 (50%), Positives = 41/57 (71%)
Frame = +2
Query: 83 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAM 253
TRVYVG L + + +LE EF +G L +VWVA PPG+AF+EF++ ++A DA SA+
Sbjct: 2 TRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISAL 58
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 65.3 bits (152), Expect = 2e-11
Identities = 29/57 (50%), Positives = 41/57 (71%)
Frame = +2
Query: 83 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAM 253
TRVYVG L + + +LE EF +G L +VWVA PPG+AF+EF++ ++A DA SA+
Sbjct: 2 TRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISAL 58
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 62.5 bits (145), Expect = 1e-10
Identities = 27/57 (47%), Positives = 40/57 (70%)
Frame = +2
Query: 83 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAM 253
+RVYVG L + + +LE EF +G + SVWVA PPG+AF++FE+ ++A DA A+
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRAL 58
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 62.1 bits (144), Expect = 2e-10
Identities = 26/53 (49%), Positives = 38/53 (71%)
Frame = +2
Query: 83 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 241
+RVYVG L + + +LE EF +G + SVWVA PPG+AF++FE+ ++A DA
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDA 54
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 50.4 bits (115), Expect = 6e-07
Identities = 25/61 (40%), Positives = 41/61 (67%), Gaps = 3/61 (4%)
Frame = +2
Query: 68 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAED 238
MSS +R +YVG L I++ ++E F KYG + + + + PPG+AF+EFE+ ++A+D
Sbjct: 1 MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60
Query: 239 A 241
A
Sbjct: 61 A 61
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 50.4 bits (115), Expect = 6e-07
Identities = 25/61 (40%), Positives = 41/61 (67%), Gaps = 3/61 (4%)
Frame = +2
Query: 68 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAED 238
MSS +R +YVG L I++ ++E F KYG + + + + PPG+AF+EFE+ ++A+D
Sbjct: 1 MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60
Query: 239 A 241
A
Sbjct: 61 A 61
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 50.4 bits (115), Expect = 6e-07
Identities = 26/61 (42%), Positives = 41/61 (67%), Gaps = 3/61 (4%)
Frame = +2
Query: 68 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAED 238
MSS +R VYVG L I++ ++E F KYG + + + + PPG+AF+EF++ ++AED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 239 A 241
A
Sbjct: 61 A 61
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 50.4 bits (115), Expect = 6e-07
Identities = 26/61 (42%), Positives = 41/61 (67%), Gaps = 3/61 (4%)
Frame = +2
Query: 68 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAED 238
MSS +R VYVG L I++ ++E F KYG + + + + PPG+AF+EF++ ++AED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 239 A 241
A
Sbjct: 61 A 61
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 50.4 bits (115), Expect = 6e-07
Identities = 26/61 (42%), Positives = 41/61 (67%), Gaps = 3/61 (4%)
Frame = +2
Query: 68 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAED 238
MSS +R VYVG L I++ ++E F KYG + + + + PPG+AF+EF++ ++AED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 239 A 241
A
Sbjct: 61 A 61
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 47.6 bits (108), Expect = 4e-06
Identities = 26/61 (42%), Positives = 40/61 (65%), Gaps = 3/61 (4%)
Frame = +2
Query: 68 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAED 238
MSS R +YVG L I+K ++E F KYG + + + + PPG+AF+EFE+ ++A+D
Sbjct: 1 MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60
Query: 239 A 241
A
Sbjct: 61 A 61
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 44.8 bits (101), Expect = 3e-05
Identities = 22/55 (40%), Positives = 35/55 (63%)
Frame = +2
Query: 77 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 241
G TR+YVG L + DLER F +YG++ V + + +AF+EF + ++A+DA
Sbjct: 9 GNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD---YAFVEFSDPRDADDA 60
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 44.4 bits (100), Expect = 4e-05
Identities = 20/53 (37%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Frame = +2
Query: 89 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAEDA 241
+YVG L I++ ++E F KYG++ + + + PP + F+EFE+ ++AEDA
Sbjct: 9 IYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDA 61
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 44.0 bits (99), Expect = 5e-05
Identities = 22/55 (40%), Positives = 35/55 (63%)
Frame = +2
Query: 77 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 241
G TR+YVG L + DLER F +YG++ V + + +AF+EF + ++A+DA
Sbjct: 9 GNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD---YAFVEFGDPRDADDA 60
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 44.0 bits (99), Expect = 5e-05
Identities = 20/44 (45%), Positives = 28/44 (63%)
Frame = +2
Query: 122 KEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAM 253
KED++ E K+GKLN ++V N GF ++ FEN Q A A A+
Sbjct: 488 KEDVKEECSKFGKLNHIFVDKNSVGFVYLRFENAQAAIGAQRAL 531
Score = 40.3 bits (90), Expect = 6e-04
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Frame = +2
Query: 71 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP----PGFAFIEFENLQEAED 238
S G R+YVG L + ++DL + F+ +G + V V + GF F++F L++A +
Sbjct: 281 SGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARN 340
Query: 239 A 241
A
Sbjct: 341 A 341
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 43.6 bits (98), Expect = 7e-05
Identities = 22/51 (43%), Positives = 34/51 (66%)
Frame = +2
Query: 89 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 241
V+VG ++ DLER FDKYG+++ V + G+AF+ FE+ ++AEDA
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRVDM---KSGYAFVYFEDERDAEDA 51
Score = 36.3 bits (80), Expect = 0.010
Identities = 16/44 (36%), Positives = 28/44 (63%)
Frame = +2
Query: 119 KKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSA 250
K+ D+E+ F+ YGK+ +V + N F+F++FE ++A A A
Sbjct: 106 KEHDIEKHFEPYGKVTNVRIRRN---FSFVQFETQEDATKALEA 146
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 43.6 bits (98), Expect = 7e-05
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Frame = +2
Query: 83 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDACS 247
+R++VGGL + + LE FD+YGK+ + + P GF FI F + + A+DA
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71
Query: 248 AM 253
M
Sbjct: 72 HM 73
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 43.6 bits (98), Expect = 7e-05
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Frame = +2
Query: 83 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDACS 247
+R++VGGL + + LE FD+YGK+ + + P GF FI F + + A+DA
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71
Query: 248 AM 253
M
Sbjct: 72 HM 73
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 41.9 bits (94), Expect = 2e-04
Identities = 20/56 (35%), Positives = 34/56 (60%)
Frame = +2
Query: 74 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 241
S + ++VGGL + +EDL + F +G++ SV + + G F++F N Q AE+A
Sbjct: 324 SNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVG-KGCGFVQFANRQSAEEA 378
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 41.9 bits (94), Expect = 2e-04
Identities = 19/53 (35%), Positives = 34/53 (64%)
Frame = +2
Query: 83 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 241
T ++VGGL + EDL++ F+++G++ SV + + G F++F N AE+A
Sbjct: 304 TTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVG-KGCGFVQFVNRPNAEEA 355
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 41.5 bits (93), Expect = 3e-04
Identities = 19/53 (35%), Positives = 33/53 (62%)
Frame = +2
Query: 83 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 241
T ++VGGL + EDL++ F ++G++ SV + + G F++F N AE+A
Sbjct: 306 TTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVG-KGCGFVQFVNRPNAEEA 357
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 41.1 bits (92), Expect = 3e-04
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Frame = +2
Query: 80 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAE 235
GT +YV GL + +DLE F K GK+ S ++ + P GFAF+ +L++AE
Sbjct: 71 GTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAE 127
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 41.1 bits (92), Expect = 3e-04
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Frame = +2
Query: 80 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAE 235
GT +YV GL + +DLE F K GK+ S ++ + P GFAF+ +L++AE
Sbjct: 70 GTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAE 126
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 41.1 bits (92), Expect = 3e-04
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +2
Query: 83 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSA 250
T VYV L E +DL+ F +YGK+ S V + GF F+ FEN +A A +
Sbjct: 29 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVES 88
Query: 251 M 253
+
Sbjct: 89 L 89
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 40.7 bits (91), Expect = 5e-04
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = +2
Query: 74 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP----GFAFIEFENLQEAEDA 241
S G +Y+ L + + E L+ F +YG + S V LNP GF F+ + N +EA A
Sbjct: 329 SQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRA 388
Query: 242 CSAM 253
S M
Sbjct: 389 LSEM 392
Score = 33.9 bits (74), Expect = 0.053
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +2
Query: 83 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSA 250
T VYV L + I +++L + F K+G ++S V + G F F+ FE + A A
Sbjct: 229 TNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEK 288
Query: 251 M 253
M
Sbjct: 289 M 289
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 39.9 bits (89), Expect = 8e-04
Identities = 22/55 (40%), Positives = 32/55 (58%)
Frame = +2
Query: 89 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAM 253
V+ G ++ DLER F KYGK+ V + GFAF+ E+ ++AEDA A+
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDM---KAGFAFVYMEDERDAEDAIRAL 55
Score = 35.1 bits (77), Expect = 0.023
Identities = 18/47 (38%), Positives = 28/47 (59%)
Frame = +2
Query: 110 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSA 250
+ + DLER F+ YGK+ +V + N FAFI++E ++A A A
Sbjct: 106 QNTRTRDLERHFEPYGKIVNVRIRRN---FAFIQYEAQEDATRALDA 149
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 39.9 bits (89), Expect = 8e-04
Identities = 22/55 (40%), Positives = 32/55 (58%)
Frame = +2
Query: 89 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAM 253
V+ G ++ DLER F KYGK+ V + GFAF+ E+ ++AEDA A+
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDM---KAGFAFVYMEDERDAEDAIRAL 55
Score = 35.1 bits (77), Expect = 0.023
Identities = 18/47 (38%), Positives = 28/47 (59%)
Frame = +2
Query: 110 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSA 250
+ + DLER F+ YGK+ +V + N FAFI++E ++A A A
Sbjct: 106 QNTRTRDLERHFEPYGKIVNVRIRRN---FAFIQYEAQEDATRALDA 149
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 39.9 bits (89), Expect = 8e-04
Identities = 21/51 (41%), Positives = 31/51 (60%)
Frame = +2
Query: 89 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 241
VYVG + DLER F K+G++ V + G+AF+ FE+ ++AEDA
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRVKRVDM---KSGYAFVYFEDERDAEDA 51
Score = 31.9 bits (69), Expect = 0.21
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = +2
Query: 119 KKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 241
++ D+ER F+ YGK+ +V + N FAF++F ++A A
Sbjct: 108 RERDMERHFEPYGKVLNVRMRRN---FAFVQFATQEDATKA 145
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 39.1 bits (87), Expect = 0.001
Identities = 22/55 (40%), Positives = 32/55 (58%)
Frame = +2
Query: 89 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAM 253
V+ G ++ DLER F KYGK+ V + GFAF+ E+ ++AEDA A+
Sbjct: 4 VFCGNFEYDAREGDLERLFRKYGKVERVDM---KAGFAFVYMEDERDAEDAIRAL 55
Score = 33.9 bits (74), Expect = 0.053
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = +2
Query: 110 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSA 250
+ + DLE+ F+ YGK+ +V + N FAFI++E ++A A A
Sbjct: 107 DNTRTRDLEKHFEPYGKIVNVRIRRN---FAFIQYEAQEDATRALDA 150
>At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing
protein
Length = 748
Score = 38.7 bits (86), Expect = 0.002
Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Frame = +2
Query: 71 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSV-WVALNPPGFAFIEF 214
S GG R++VGGL E + ++DL + F G +++V +V FA+I+F
Sbjct: 6 SGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDF 54
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 38.7 bits (86), Expect = 0.002
Identities = 18/60 (30%), Positives = 35/60 (58%)
Frame = +2
Query: 74 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAM 253
S ++VGG+ + EDL + F ++G++ SV + + G F++F + + AEDA ++
Sbjct: 318 STNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVG-KGCGFVQFADRKSAEDAIESL 376
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 37.5 bits (83), Expect = 0.004
Identities = 19/53 (35%), Positives = 31/53 (58%)
Frame = +2
Query: 89 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACS 247
++VGG+ + K+DLE EF K+GK+ + L AFI++ + +A A S
Sbjct: 252 LWVGGIGPNVSKDDLEEEFSKFGKIED-FRFLRERKTAFIDYYEMDDALQAKS 303
Score = 33.9 bits (74), Expect = 0.053
Identities = 18/55 (32%), Positives = 31/55 (56%)
Frame = +2
Query: 89 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAM 253
++VG L + DL F +YG ++ + V + GFAFI + +++EA A A+
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDIDRITV-YSSRGFAFIYYRHVEEAVAAKEAL 73
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 37.5 bits (83), Expect = 0.004
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Frame = +2
Query: 83 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSA 250
T VYV L E ++L+ F +YG ++S V + G F F+ FEN ++A A A
Sbjct: 225 TNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEA 284
Query: 251 M 253
+
Sbjct: 285 L 285
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 37.1 bits (82), Expect = 0.006
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Frame = +2
Query: 71 SSGG-TRVYVGGLVEGIKKEDLEREFDKYGKL---NSVW--VALNPPGFAFIEFENLQEA 232
SSG T++YV GL ++ L F+++G L N V VA P GFAF+ +E +EA
Sbjct: 72 SSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEA 131
Query: 233 EDACSAM 253
A M
Sbjct: 132 MKAIQGM 138
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 37.1 bits (82), Expect = 0.006
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Frame = +2
Query: 83 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDAC 244
T+V+VGGL + E L R FD+YG + V + G+ F+ F + + A AC
Sbjct: 24 TKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRAC 82
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 36.7 bits (81), Expect = 0.008
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Frame = +2
Query: 65 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALNPPGFAFIEFENLQEA 232
TM G + VYVGGL I +E + R F YG + +V + ++ + F+ F N + A
Sbjct: 2 TMDDGNS-VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSA 60
Query: 233 EDACSAM 253
+DA M
Sbjct: 61 DDAIEDM 67
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 36.7 bits (81), Expect = 0.008
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = +2
Query: 122 KEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAM 253
++D+ E KYG +N ++V N GF ++ F++++ A A AM
Sbjct: 458 RDDVADECSKYGPVNHIYVDKNSAGFVYLRFQSVEAAAAAQRAM 501
Score = 30.7 bits (66), Expect = 0.49
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Frame = +2
Query: 86 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSA 250
++YVG L + + L + F+ +G + V + L+P GF FI+F L+ ++ A A
Sbjct: 266 KLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIA 325
Query: 251 M 253
+
Sbjct: 326 L 326
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 36.7 bits (81), Expect = 0.008
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Frame = +2
Query: 86 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSA 250
+VYVG L + + KE LE F + GK+ S V+ P GF F+ F + ++ E A A
Sbjct: 178 KVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVA 237
Query: 251 M 253
+
Sbjct: 238 L 238
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 36.3 bits (80), Expect = 0.010
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Frame = +2
Query: 80 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDAC 244
G+R++VGGL + DLER F ++G + + L GF FI F + + +++
Sbjct: 6 GSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESI 65
Query: 245 SAM 253
M
Sbjct: 66 REM 68
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 35.9 bits (79), Expect = 0.013
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Frame = +2
Query: 80 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDAC 244
G + V G+ E ++ED+ F +G++ ++ + L+ G+A IE+E +EA+ A
Sbjct: 94 GWIILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAI 153
Query: 245 SAM 253
SAM
Sbjct: 154 SAM 156
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 35.9 bits (79), Expect = 0.013
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = +2
Query: 83 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSA 250
T VYV L E + E+L + F ++G S + + GF F+ FEN +A A A
Sbjct: 224 TNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDA 283
Query: 251 M 253
+
Sbjct: 284 L 284
Score = 31.5 bits (68), Expect = 0.28
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Frame = +2
Query: 74 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFA----FIEFENLQEAEDA 241
S G+ +YV L E + + L F +G + S V +P G + F+ F +EA A
Sbjct: 324 SQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRA 383
Query: 242 CSAM 253
+ M
Sbjct: 384 ITEM 387
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 35.9 bits (79), Expect = 0.013
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = +2
Query: 83 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSA 250
T VYV LVE DL+R F ++G++ S V + G F F+ FE + A A
Sbjct: 119 TNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEK 178
Query: 251 M 253
M
Sbjct: 179 M 179
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 35.9 bits (79), Expect = 0.013
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Frame = +2
Query: 80 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEA 232
G +YV GL + + DLE F K GK+ V + L+P GF FI +++ +A
Sbjct: 44 GNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDA 99
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 35.9 bits (79), Expect = 0.013
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Frame = +2
Query: 80 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEA 232
G +YV GL + + DLE F K GK+ V + L+P GF FI +++ +A
Sbjct: 74 GNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDA 129
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 35.5 bits (78), Expect = 0.017
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Frame = +2
Query: 68 MSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEA 232
+ + T +Y+G + G + ++E F ++G + V VA N F FI+FE+ + A
Sbjct: 55 LQNKATVLYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVA 114
Query: 233 EDACSAM 253
E A AM
Sbjct: 115 EIAAGAM 121
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 35.5 bits (78), Expect = 0.017
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Frame = +2
Query: 89 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDA 241
++VG L +G +EDL++ F G++ V + NP G AF+ F +++A+ A
Sbjct: 216 IFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRA 271
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 35.5 bits (78), Expect = 0.017
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Frame = +2
Query: 83 TRVYVGGLVEGIKKEDLEREFDKYGK-LNSVWVA----LNPPGFAFIEFENLQEAEDACS 247
T+V+VGGL + E L + F++YG+ L +V +A G+ F+ F + + A AC+
Sbjct: 24 TKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACA 83
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 35.1 bits (77), Expect = 0.023
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Frame = +2
Query: 86 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFEN 220
+++VGGL I +E+ + FD++G + V V + P GF FI F++
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS 160
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 35.1 bits (77), Expect = 0.023
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Frame = +2
Query: 86 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFEN 220
+++VGGL I +E+ + FD++G + V V + P GF FI F++
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS 160
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 35.1 bits (77), Expect = 0.023
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Frame = +2
Query: 86 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFEN 220
+++VGGL I +E+ + FD++G + V V + P GF FI F++
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS 160
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 35.1 bits (77), Expect = 0.023
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Frame = +2
Query: 89 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACS 247
++V + G K+ L R F+K+G++ ++ +P G A+IEF + AE+A S
Sbjct: 518 IFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAENALS 575
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 35.1 bits (77), Expect = 0.023
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Frame = +2
Query: 71 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAE 235
+ G RVYVG L G+ LE F + GK+ V + GF F+ +++ QE +
Sbjct: 200 AGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQ 259
Query: 236 DACSAM 253
+A ++
Sbjct: 260 NAIKSL 265
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 34.7 bits (76), Expect = 0.030
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Frame = +2
Query: 83 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDAC 244
T++YVGGL +KE L F ++G++ V V + G+ F+ F++ + A AC
Sbjct: 13 TKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRAC 71
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 34.3 bits (75), Expect = 0.040
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Frame = +2
Query: 83 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSA 250
T VYV L+E + + L F +YG ++SV V + GF F+ F N + A+ A +
Sbjct: 202 TNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMES 261
Query: 251 MMVLR 265
+ L+
Sbjct: 262 LCGLQ 266
Score = 31.1 bits (67), Expect = 0.37
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = +2
Query: 74 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL---NPPGFAFIEFENLQEAEDAC 244
+G +YV L I LER F +G + S V GF F++F+ Q A A
Sbjct: 109 TGFANLYVKNLDSSITSSCLERMFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSAR 168
Query: 245 SAM 253
SA+
Sbjct: 169 SAL 171
Score = 27.9 bits (59), Expect = 3.5
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = +2
Query: 83 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP----PGFAFIEFENLQEAEDA 241
+ +YV L E + + L F YG++ S V + GF F+ F N +E++ A
Sbjct: 304 SNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQA 360
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 33.9 bits (74), Expect = 0.053
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = +2
Query: 110 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSA 250
+ + DLE+ F+ YGK+ +V + N FAFI++E ++A A A
Sbjct: 66 DNTRTRDLEKHFEPYGKIVNVRIRRN---FAFIQYEAQEDATRALDA 109
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 33.9 bits (74), Expect = 0.053
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Frame = +2
Query: 83 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 247
++++VGGL E L+ F +GK+ V L+ GF F+ +++++ A +A
Sbjct: 36 SKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQ 95
Query: 248 AM 253
AM
Sbjct: 96 AM 97
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 33.5 bits (73), Expect = 0.070
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Frame = +2
Query: 89 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDA 241
VYVG + E+++ F G +N V + ++ P GFA++EF ++ ++A
Sbjct: 91 VYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEA 145
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 33.5 bits (73), Expect = 0.070
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Frame = +2
Query: 89 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDA 241
VYVG + E+++ F G +N V + ++ P GFA++EF ++ ++A
Sbjct: 91 VYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEA 145
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 33.5 bits (73), Expect = 0.070
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Frame = +2
Query: 71 SSGGTR---VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQ 226
+ GG R ++VGGL I + + + FD++G + V V + P GF FI F++ +
Sbjct: 115 NGGGARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEE 174
Query: 227 EAE 235
+
Sbjct: 175 SVD 177
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 33.5 bits (73), Expect = 0.070
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Frame = +2
Query: 71 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAE 235
S G R+YVG L G+ LE F++ GK+ V + GF F+ + QE +
Sbjct: 245 SGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQ 304
Query: 236 DACSAM 253
A +++
Sbjct: 305 KAINSL 310
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 33.5 bits (73), Expect = 0.070
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Frame = +2
Query: 71 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAE 235
S G R+YVG L G+ LE F++ GK+ V + GF F+ + QE +
Sbjct: 253 SGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQ 312
Query: 236 DACSAM 253
A +++
Sbjct: 313 KAINSL 318
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 33.1 bits (72), Expect = 0.093
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Frame = +2
Query: 86 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 250
R ++GGL L F+KYG L V L+ GF FI F+ + ++A +A
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAA 67
Query: 251 M 253
M
Sbjct: 68 M 68
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 33.1 bits (72), Expect = 0.093
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Frame = +2
Query: 74 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAED 238
S + ++V G+ +E L + F +YG++ V V ++ P GFA++ F + +EAE
Sbjct: 18 SFSSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEK 77
Query: 239 A 241
A
Sbjct: 78 A 78
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 32.7 bits (71), Expect = 0.12
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Frame = +2
Query: 83 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 247
+++++GG+ + ++ L F KYG++ V L+ GF F+ F + + A A
Sbjct: 40 SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99
Query: 248 AM 253
A+
Sbjct: 100 AL 101
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 32.7 bits (71), Expect = 0.12
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Frame = +2
Query: 83 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDA 241
T + V L ++EDL R F+++G + +++ + P GF FI+F + +A +A
Sbjct: 37 TSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEA 94
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 32.7 bits (71), Expect = 0.12
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +2
Query: 83 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSA 250
T VYV L + I ++L++ F KYG ++S V + G F F+ F + + A A
Sbjct: 225 TNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEK 284
Query: 251 M 253
M
Sbjct: 285 M 285
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 32.3 bits (70), Expect = 0.16
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Frame = +2
Query: 68 MSSGGTRVYVGGLVEGIKKEDLEREFDKYG-----KLNSVWVALNPPGFAFIEFENLQEA 232
MS R +VGGL EDL+R F ++G K+ + + GF F+ F++ +
Sbjct: 1 MSEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAM 60
Query: 233 EDACSAM 253
DA M
Sbjct: 61 RDAIEEM 67
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 32.3 bits (70), Expect = 0.16
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Frame = +2
Query: 68 MSSGGTRVYVGGLVEGIKKEDLEREFDKYG-----KLNSVWVALNPPGFAFIEFENLQEA 232
MS R +VGGL EDL+R F ++G K+ + + GF F+ F++ +
Sbjct: 1 MSEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAM 60
Query: 233 EDACSAM 253
DA M
Sbjct: 61 RDAIEEM 67
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 32.3 bits (70), Expect = 0.16
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Frame = +2
Query: 68 MSSGGTRVYVGGLVEGIKKEDLEREFDKYG-----KLNSVWVALNPPGFAFIEFENLQEA 232
MS R +VGGL EDL+R F ++G K+ + + GF F+ F++ +
Sbjct: 1 MSEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAM 60
Query: 233 EDACSAM 253
DA M
Sbjct: 61 RDAIEEM 67
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 32.3 bits (70), Expect = 0.16
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Frame = +2
Query: 68 MSSGGTRVYVGGLVEGIKKEDLEREFDKYG-----KLNSVWVALNPPGFAFIEFENLQEA 232
MS R +VGGL EDL+R F ++G K+ + + GF F+ F++ +
Sbjct: 1 MSEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAM 60
Query: 233 EDACSAM 253
DA M
Sbjct: 61 RDAIEEM 67
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 32.3 bits (70), Expect = 0.16
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Frame = +2
Query: 86 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALN-PPGFAFIEFENLQEAEDA 241
+++VGGL + E+ + F+ YG + V + A N P GF F+ F++ ++A D+
Sbjct: 111 KIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDS-EDAVDS 166
Score = 26.6 bits (56), Expect = 8.1
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = +2
Query: 68 MSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFEN 220
M S +++VGG+ ++ L F YG+++ V + P GF F+ F +
Sbjct: 1 MDSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSD 56
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 32.3 bits (70), Expect = 0.16
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Frame = +2
Query: 83 TRVYVGGLVEGIKKEDLEREFDKYGK-LNSVWVA----LNPPGFAFIEFENLQEAEDAC 244
T+V+VGGL KE + F KYG L +V ++ G+ F+ F++ + A AC
Sbjct: 17 TKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRAC 75
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 31.9 bits (69), Expect = 0.21
Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Frame = +2
Query: 89 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDA 241
+YVG + E++++ F G +N V + + P GFA++EF ++ +++
Sbjct: 105 IYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNS 159
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 31.9 bits (69), Expect = 0.21
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = +2
Query: 119 KKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 241
++ D+ER F+ YGK+ +V + N FAF++F ++A A
Sbjct: 82 RERDMERHFEPYGKVLNVRMRRN---FAFVQFATQEDATKA 119
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 31.9 bits (69), Expect = 0.21
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = +2
Query: 86 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFEN 220
+++VGG+ + +E L++ F +YG + VA P GF F+ F N
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFAN 56
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 31.9 bits (69), Expect = 0.21
Identities = 16/55 (29%), Positives = 31/55 (56%)
Frame = +2
Query: 89 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAM 253
+YVGGL I ++D+ +F +G++ S+ + L AF+ + + + AE A +
Sbjct: 230 LYVGGLNSRILEQDIRDQFYAHGEIESIRI-LADKACAFVTYTSREGAEKAAQEL 283
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 31.5 bits (68), Expect = 0.28
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Frame = +2
Query: 119 KKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 253
+ E+L F+++G + V++ + P GFAF+EF + +A +A +M
Sbjct: 59 RPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSM 108
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 31.5 bits (68), Expect = 0.28
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Frame = +2
Query: 83 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP----GFAFIEFENLQEAEDACSA 250
T +Y+ L + ++ L +F ++GK+ S+ +A + G+AF+ F+N ++A A
Sbjct: 201 TNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAET 260
Query: 251 M 253
+
Sbjct: 261 V 261
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 31.5 bits (68), Expect = 0.28
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Frame = +2
Query: 83 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDA 241
++++VGG+ + L F KYG++ + ++ GFAF+ F + +EA +A
Sbjct: 34 SKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNA 91
>At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 391
Score = 31.1 bits (67), Expect = 0.37
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Frame = +2
Query: 89 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG------FAFIEFENLQEAEDACSA 250
VYV L I ++E EF +G + V L +AF+EFE++ E+A A
Sbjct: 259 VYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENAIKA 318
>At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 450
Score = 31.1 bits (67), Expect = 0.37
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Frame = +2
Query: 89 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG------FAFIEFENLQEAEDACSA 250
VYV L I ++E EF +G + V L +AF+EFE++ E+A A
Sbjct: 318 VYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENAIKA 377
>At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing
protein RNA-binding protein LAH1, Saccharomyces
cerevisiae, PIR2:B48600; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 433
Score = 31.1 bits (67), Expect = 0.37
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Frame = +2
Query: 116 IKKEDLEREFDKYGKLNSVWVALNP------PGFAFIEFENLQEAEDACSAMMV 259
+K+ED+E F +YGK+NSV + + G A +EF ++A++ +V
Sbjct: 127 VKREDVESFFSQYGKVNSVRMPRHVAESRIFSGVALVEFPTEEDAQNVMKQNLV 180
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 31.1 bits (67), Expect = 0.37
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Frame = +2
Query: 86 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 250
RVYVG L + LE+ F ++GK+ V + GF F+ ++ E +A SA
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Query: 251 M 253
+
Sbjct: 305 L 305
>At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
gb:D86122
Length = 785
Score = 31.1 bits (67), Expect = 0.37
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +2
Query: 80 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAM 253
GT V V L + DLE F YG++ + N F+EF +++ A+ A A+
Sbjct: 222 GTLV-VFNLAPSVSNRDLENIFGVYGEIKEIRETPNKRHHKFVEFFDVRSADAALKAL 278
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 31.1 bits (67), Expect = 0.37
Identities = 15/55 (27%), Positives = 30/55 (54%)
Frame = +2
Query: 89 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAM 253
+YVGGL + ++D+ +F +G++ S+ + L AF+ + + AE A +
Sbjct: 230 LYVGGLNSRVLEQDIRDQFYAHGEIESIRI-LAEKACAFVTYTTREGAEKAAEEL 283
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 30.7 bits (66), Expect = 0.49
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Frame = +2
Query: 86 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 250
R+YVG L + LER F ++GK+ V + GF F++ N E A +A
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267
Query: 251 M 253
+
Sbjct: 268 L 268
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 30.7 bits (66), Expect = 0.49
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = +2
Query: 83 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDA 241
T VY+G + +E L F + G++ + + L+ P GF F+ F + ++ EDA
Sbjct: 34 TTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDA 91
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 30.7 bits (66), Expect = 0.49
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Frame = +2
Query: 83 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 247
TRVYVG L + L F YG + V + GF F+ + + EAE A S
Sbjct: 3 TRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVS 62
Query: 248 AM 253
M
Sbjct: 63 GM 64
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 30.7 bits (66), Expect = 0.49
Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = +2
Query: 86 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFEN 220
+++VGGL + ++ F+ YG ++ + ++ P GF F+ F++
Sbjct: 111 KIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDS 160
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 30.3 bits (65), Expect = 0.65
Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = +2
Query: 83 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWV-----ALNPPGFAFIEFENLQEAED 238
TR++V + + + D F++YG++ +++ + G FI F + ED
Sbjct: 91 TRIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVED 147
Score = 29.1 bits (62), Expect = 1.5
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Frame = +2
Query: 80 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEF 214
G +++VG L + +DL F ++G + ++ +P GF F+ F
Sbjct: 239 GNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTF 288
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 30.3 bits (65), Expect = 0.65
Identities = 15/57 (26%), Positives = 31/57 (54%)
Frame = +2
Query: 83 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAM 253
T ++VG + + + ++DL+ F ++G+L V + F+++ N AE A S +
Sbjct: 278 TTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAG-KRCGFVQYANRACAEQALSVL 333
>At3g25150.1 68416.m03140 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profile: PF00076 RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain); similar to
ras-GTPase-activating protein (GAP<120>)
SH3-domain-binding protein 2 GB:NP_035946 [Mus musculus]
Length = 488
Score = 30.3 bits (65), Expect = 0.65
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = +2
Query: 80 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG---FAFIEFENLQEAEDACSA 250
G +Y+ GL LE EF K+G + + + + F F+EFE+ + A A
Sbjct: 311 GPSIYLKGLPLDATPALLENEFQKFGLIRTNGIQVRSQKGFCFGFVEFESASSMQSAIEA 370
Query: 251 MMVL 262
V+
Sbjct: 371 SPVM 374
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 29.9 bits (64), Expect = 0.86
Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Frame = +2
Query: 89 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDA 241
V+VG + E++++ F G ++ V + + P GFA++EF ++ ++A
Sbjct: 94 VFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVEVEAVQEA 148
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 29.9 bits (64), Expect = 0.86
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Frame = +2
Query: 83 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDAC 244
T++YV GL + E L F+++G++ V + GF F+ F ++ A AC
Sbjct: 9 TKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRAC 67
>At3g61130.1 68416.m06841 glycosyl transferase family 8 protein
contains Pfam profile: PF01501 glycosyl transferase
family 8
Length = 673
Score = 29.9 bits (64), Expect = 0.86
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 152 YGKLNSVWVALNPPGFAFIEFENLQE 229
+G +N +W LNPPG A I EN+ E
Sbjct: 405 FGAMN-MWFLLNPPGKATIHVENVDE 429
>At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative similar to
spliceosomal protein [Solanum tuberosum] GI:169589
Length = 232
Score = 29.9 bits (64), Expect = 0.86
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Frame = +2
Query: 89 VYVGGLVEGIKKEDLERE----FDKYGKLNSVWVALNPP---GFAFIEFENLQEAEDACS 247
+Y+ L E IKKE+L+R F ++G++ V VAL P G A++ F + A A
Sbjct: 12 IYIQNLNERIKKEELKRSLYCLFSQFGRILDV-VALKTPKLRGQAWVTFSEVTAAGHAVR 70
Query: 248 AM 253
M
Sbjct: 71 QM 72
>At1g06960.2 68414.m00741 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative non-consensus
splice donor GC at exon 4; similar to spliceosomal
protein (U2B) GI:169588 from [Solanum tuberosum]
Length = 228
Score = 29.9 bits (64), Expect = 0.86
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Frame = +2
Query: 89 VYVGGLVEGIKKEDLERE----FDKYGKLNSVWVALNPP---GFAFIEFENLQEAEDACS 247
+Y+ + E IKKE+L+R F ++G+L V VAL P G A++ F + A +A
Sbjct: 12 IYIKHINEKIKKEELKRSLYCLFSQFGRLLDV-VALKTPKLRGQAWVVFTEVTAASNAVR 70
Query: 248 AM 253
M
Sbjct: 71 QM 72
>At1g06960.1 68414.m00740 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative non-consensus
splice donor GC at exon 4; similar to spliceosomal
protein (U2B) GI:169588 from [Solanum tuberosum]
Length = 229
Score = 29.9 bits (64), Expect = 0.86
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Frame = +2
Query: 89 VYVGGLVEGIKKEDLERE----FDKYGKLNSVWVALNPP---GFAFIEFENLQEAEDACS 247
+Y+ + E IKKE+L+R F ++G+L V VAL P G A++ F + A +A
Sbjct: 12 IYIKHINEKIKKEELKRSLYCLFSQFGRLLDV-VALKTPKLRGQAWVVFTEVTAASNAVR 70
Query: 248 AM 253
M
Sbjct: 71 QM 72
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 29.5 bits (63), Expect = 1.1
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +2
Query: 89 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN--PPGFAFIEFENLQEAEDA 241
+YV L I E++ F KYG + + + + G AF+ +E++ +A++A
Sbjct: 21 LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTAFVVYEDIYDAKNA 73
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 29.5 bits (63), Expect = 1.1
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +2
Query: 83 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 241
T V+VGGL + + L+ F +YG++ V + F++F AE+A
Sbjct: 261 TTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAG-KRCGFVQFSEKSCAEEA 312
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 29.1 bits (62), Expect = 1.5
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +2
Query: 89 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP 190
V+VG L +KK+ + +EF K+G++ SV + P
Sbjct: 173 VFVGNLPLKVKKKVILKEFSKFGEVESVRIRSVP 206
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 29.1 bits (62), Expect = 1.5
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +2
Query: 71 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSA 250
SS G ++V L I E+L F YG++ V ++ +IEF ++++A+ A
Sbjct: 292 SSEGA-LWVNNLDSSISNEELHGIFSSYGEIREVRRTMHENSQVYIEFFDVRKAKVALQG 350
Query: 251 M 253
+
Sbjct: 351 L 351
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 29.1 bits (62), Expect = 1.5
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Frame = +2
Query: 83 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDA 241
T+V+VGGL +++ R FD++G++ + + G+ F+ F + A A
Sbjct: 17 TKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRA 74
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 28.7 bits (61), Expect = 2.0
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Frame = +2
Query: 83 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP----PGFAFIEFENLQEAEDACSA 250
T+++V + K +L + F +G++ S+ + G+AF+EF QEA +A A
Sbjct: 669 TKLHVKNIAFEATKRELRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEFVTKQEALNAKKA 728
Query: 251 M 253
+
Sbjct: 729 L 729
>At3g27700.2 68416.m03459 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 908
Score = 28.7 bits (61), Expect = 2.0
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +2
Query: 110 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSA 250
E +++ + F K+GK+ + + +N AF++F +EAE A A
Sbjct: 448 ESNRRDLILAHFQKFGKVIDIHIPVNSER-AFVQFSKREEAESALRA 493
>At3g27700.1 68416.m03458 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 908
Score = 28.7 bits (61), Expect = 2.0
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +2
Query: 110 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSA 250
E +++ + F K+GK+ + + +N AF++F +EAE A A
Sbjct: 448 ESNRRDLILAHFQKFGKVIDIHIPVNSER-AFVQFSKREEAESALRA 493
>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
transport factor 2 (NTF2) domain
Length = 1294
Score = 28.7 bits (61), Expect = 2.0
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +2
Query: 131 LEREFDKYGKLNSVWVALNPP--GFAFIEFENLQEAEDACSAMMVLRC*APL*K*RSLES 304
+E K+G +N++ + + P FAF++FE A A A V C + + L +
Sbjct: 761 IEDALKKFGPINAISIIKSGPLYKFAFVDFEKADVANRAIMASPVRICEKNVNVQKKLSA 820
Query: 305 GTG 313
G G
Sbjct: 821 GAG 823
>At1g79880.3 68414.m09332 La domain-containing protein contains Pfam
profile PF05383: La domain; similar to putative protein
GB:CAA18589 [Arabidopsis thaliana]
Length = 357
Score = 28.7 bits (61), Expect = 2.0
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Frame = +2
Query: 116 IKKEDLEREFDKYGKLNSVWVALNPP------GFAFIEFENLQEAEDACSAMMV 259
IK ED+ F +Y K+NSV + N G A +EF + Q+ +D +V
Sbjct: 72 IKMEDVSSFFSQYAKVNSVRLPPNIADKRRFCGTALVEFSSEQDTQDILRQSLV 125
>At1g79880.2 68414.m09331 La domain-containing protein contains Pfam
profile PF05383: La domain; similar to putative protein
GB:CAA18589 [Arabidopsis thaliana]
Length = 345
Score = 28.7 bits (61), Expect = 2.0
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Frame = +2
Query: 116 IKKEDLEREFDKYGKLNSVWVALNPP------GFAFIEFENLQEAEDACSAMMV 259
IK ED+ F +Y K+NSV + N G A +EF + Q+ +D +V
Sbjct: 72 IKMEDVSSFFSQYAKVNSVRLPPNIADKRRFCGTALVEFSSEQDTQDILRQSLV 125
>At1g79880.1 68414.m09333 La domain-containing protein contains Pfam
profile PF05383: La domain; similar to putative protein
GB:CAA18589 [Arabidopsis thaliana]
Length = 399
Score = 28.7 bits (61), Expect = 2.0
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Frame = +2
Query: 116 IKKEDLEREFDKYGKLNSVWVALNPP------GFAFIEFENLQEAEDACSAMMV 259
IK ED+ F +Y K+NSV + N G A +EF + Q+ +D +V
Sbjct: 126 IKMEDVSSFFSQYAKVNSVRLPPNIADKRRFCGTALVEFSSEQDTQDILRQSLV 179
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 28.3 bits (60), Expect = 2.6
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Frame = +2
Query: 77 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDA 241
G R++VGGL + + + +G L + N G+AF +++L + A
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIA 416
Query: 242 CSAM 253
C+A+
Sbjct: 417 CAAL 420
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 28.3 bits (60), Expect = 2.6
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Frame = +2
Query: 77 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDA 241
G R++VGGL + + + +G L + N G+AF +++L + A
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIA 416
Query: 242 CSAM 253
C+A+
Sbjct: 417 CAAL 420
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 28.3 bits (60), Expect = 2.6
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Frame = +2
Query: 77 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDA 241
G R++VGGL + + + +G L + N G+AF +++L + A
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIA 416
Query: 242 CSAM 253
C+A+
Sbjct: 417 CAAL 420
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 28.3 bits (60), Expect = 2.6
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Frame = +2
Query: 80 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWV-----ALNPPGFAFIEFENLQEAEDA 241
G+ V++GGL + +EDL ++ G++ V + + + G+AF+ F+ A+ A
Sbjct: 115 GSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKA 173
>At1g05510.1 68414.m00563 expressed protein
Length = 241
Score = 28.3 bits (60), Expect = 2.6
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 80 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVW 175
G +++ G+ E I+++DLE+ YGK+ W
Sbjct: 121 GGFLFMPGVPEAIQRQDLEKVAKTYGKVYHFW 152
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 27.9 bits (59), Expect = 3.5
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 80 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 196
GT++Y+ L G+ ED++ F + G+L V + G
Sbjct: 85 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSG 123
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 27.9 bits (59), Expect = 3.5
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 80 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 196
GT++Y+ L G+ ED++ F + G+L V + G
Sbjct: 21 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSG 59
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 27.9 bits (59), Expect = 3.5
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 80 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 196
GT++Y+ L G+ ED++ F + G+L V + G
Sbjct: 87 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSG 125
>At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 363
Score = 27.9 bits (59), Expect = 3.5
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 89 VYVGGLVEGIKKEDLEREFDKYGKLNSVWV 178
+YVGGL I ++D+ F YG++ S+ V
Sbjct: 227 LYVGGLNSRIFEQDIHDHFYAYGEMESIRV 256
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 27.9 bits (59), Expect = 3.5
Identities = 13/60 (21%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Frame = +2
Query: 86 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALNPPGFAFIEFENLQEAEDACSAM 253
+++VG L + + + +++ F KYG + + + G AF+++E ++A A ++
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESI 166
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 27.9 bits (59), Expect = 3.5
Identities = 13/60 (21%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Frame = +2
Query: 86 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALNPPGFAFIEFENLQEAEDACSAM 253
+++VG L + + + +++ F KYG + + + G AF+++E ++A A ++
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESI 166
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 27.9 bits (59), Expect = 3.5
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Frame = +2
Query: 86 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP----PGFAFIEFENLQEAEDACSAM 253
++YV L + K ++ F +YG + +++AL+ G+AF++F + A A A+
Sbjct: 208 KLYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDDMKICRGYAFVQFSCKEMALAAIKAL 267
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 27.5 bits (58), Expect = 4.6
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +2
Query: 83 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAM 253
T V GL + L + F + +L P GF FI FE+ +A+ A A+
Sbjct: 71 TCVSNSGLSAYTTDQSLRQLFAPFARLIKDQQTQRPKGFGFITFESEDDAQKALKAL 127
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 27.5 bits (58), Expect = 4.6
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 80 GTRVYVGGLVEGIKKEDLEREFDKYGKL 163
GT++Y+ L G+ ED++ F + G L
Sbjct: 107 GTKLYISNLDYGVSNEDIKELFSEVGDL 134
>At3g08670.1 68416.m01007 expressed protein
Length = 567
Score = 27.5 bits (58), Expect = 4.6
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -1
Query: 216 SNSM-KAKPGGFSATQTEFSFPYLSNSRSRSSFLIPSTRPPTYTRVPP 76
S+SM KA+P S T S P LS S P++RP T TR P
Sbjct: 230 SSSMDKARPSLSSRPSTPTSRPQLSASSPNIIASRPNSRPSTPTRRSP 277
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 27.5 bits (58), Expect = 4.6
Identities = 10/55 (18%), Positives = 28/55 (50%)
Frame = +2
Query: 89 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAM 253
++V + ++ +L F++YG + +++ GF I + +++ A A ++
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARMAMRSL 224
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 27.5 bits (58), Expect = 4.6
Identities = 10/55 (18%), Positives = 28/55 (50%)
Frame = +2
Query: 89 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAM 253
++V + ++ +L F++YG + +++ GF I + +++ A A ++
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARMAMRSL 224
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 27.5 bits (58), Expect = 4.6
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Frame = +2
Query: 89 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAM 253
+YVGGL + + + L F +G + V L+ F F+ F E EDA +AM
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTF---LEREDASAAM 71
>At5g56180.2 68418.m07009 actin-related protein, putative (ARP8)
strong similarity to actin-related protein 8A (ARP8)
[Arabidopsis thaliana] GI:21427473; contains Pfam
profile PF00022: Actin; supporting cDNA
gi|21427470|gb|AF507916.1|
Length = 387
Score = 27.1 bits (57), Expect = 6.1
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = -1
Query: 252 IALHASSASCKFSNSMKAKPGGFSATQTEF 163
I + S CKF S A P G SAT EF
Sbjct: 136 IIIDGGSGYCKFGWSKYASPSGRSATFLEF 165
>At5g56180.1 68418.m07008 actin-related protein, putative (ARP8)
strong similarity to actin-related protein 8A (ARP8)
[Arabidopsis thaliana] GI:21427473; contains Pfam
profile PF00022: Actin; supporting cDNA
gi|21427470|gb|AF507916.1|
Length = 471
Score = 27.1 bits (57), Expect = 6.1
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = -1
Query: 252 IALHASSASCKFSNSMKAKPGGFSATQTEF 163
I + S CKF S A P G SAT EF
Sbjct: 136 IIIDGGSGYCKFGWSKYASPSGRSATFLEF 165
>At5g50170.1 68418.m06213 C2 domain-containing protein / GRAM
domain-containing protein low similarity to SP|P40748
Synaptotagmin III (SytIII) {Rattus norvegicus}; contains
Pfam profiles PF00168: C2 domain, PF02893: GRAM domain
Length = 1027
Score = 27.1 bits (57), Expect = 6.1
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -3
Query: 127 FLLDSLDETADVHASTTRTHGLVLFMKIQLKFIYVNKN 14
FL + DE AD+ + H K+QL+ NKN
Sbjct: 626 FLKHTADELADLSVALVGNHAQASQSKLQLRIFLENKN 663
>At5g27640.1 68418.m03311 eukaryotic translation initiation factor 3
subunit 9 / eIF-3 eta / eIF3b (TIF3B1) nearly identical
to SP|Q9C5Z1 Eukaryotic translation initiation factor 3
subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b) {Arabidopsis
thaliana}
Length = 712
Score = 27.1 bits (57), Expect = 6.1
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 5/33 (15%)
Frame = +2
Query: 158 KLNSVWVALNPP-----GFAFIEFENLQEAEDA 241
K N +W+ ++P G+ FIEF QEA++A
Sbjct: 89 KENGLWMPVDPDTKMTLGYCFIEFNTPQEAQNA 121
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 27.1 bits (57), Expect = 6.1
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Frame = +2
Query: 83 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEA 232
T +Y+ L + +E L F +GK+ +A + GFAFIEFE+ A
Sbjct: 17 TSLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGFAFIEFESADSA 70
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 27.1 bits (57), Expect = 6.1
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Frame = +2
Query: 89 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFEN 220
VYVGG+ + + DL F +YG++ V + + GFAF+ +E+
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYED 86
>At3g14450.1 68416.m01831 RNA-binding protein, putative contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) (2 copies)
Length = 327
Score = 27.1 bits (57), Expect = 6.1
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = +2
Query: 89 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG---FAFIEFENLQEAEDACS 247
VYV + + + +E L F G++ + +P FAF+EF + Q A +A S
Sbjct: 143 VYVSDIDQSVTEEGLAGLFSNCGQVVDCRICGDPHSVLRFAFVEFADDQGAHEALS 198
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 27.1 bits (57), Expect = 6.1
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Frame = +2
Query: 86 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 250
R +VGGL ++ +ER F+++G++ + ++ GF F+ F++ A
Sbjct: 45 RCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDR 104
Query: 251 M 253
M
Sbjct: 105 M 105
>At5g65770.1 68418.m08276 nuclear matrix constituent protein-related
low similarity to nuclear matrix constituent protein 1
(NMCP1) [Daucus carota] GI:2190187
Length = 1042
Score = 26.6 bits (56), Expect = 8.1
Identities = 11/45 (24%), Positives = 27/45 (60%)
Frame = +2
Query: 119 KKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAM 253
+++++ E ++ KL ++ VAL+ A ++ NL+ + + SA+
Sbjct: 754 ERDEIRHEIEELKKLENLKVALDDMSMAKMQLSNLERSWEKVSAL 798
>At5g37720.1 68418.m04541 RNA and export factor-binding protein,
putative transcriptional coactivator ALY, Mus musculus,
EMBL:MMU89876
Length = 288
Score = 26.6 bits (56), Expect = 8.1
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 80 GTRVYVGGLVEGIKKEDLEREFDKYGKL 163
GTR++V L +G+ ED+ F + G++
Sbjct: 92 GTRLHVTNLDQGVTNEDIRELFSEIGEV 119
>At4g25110.1 68417.m03612 latex-abundant family protein (AMC2) /
caspase family protein contains similarity to
latex-abundant protein [Hevea brasiliensis] gb:AAD13216;
contains Pfam profile PF00656: ICE-like protease
(caspase) p20 domain
Length = 418
Score = 26.6 bits (56), Expect = 8.1
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 159 FPYLSNSRSRSSFLIPSTRPPTYTRVP 79
FP+ ++S + S+F+ P P YT P
Sbjct: 49 FPFPNSSPAPSTFIYPPPTPSPYTHAP 75
>At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-binding
protein RBP37, Arabidopsis thaliana, PIR:T04196
Length = 353
Score = 26.6 bits (56), Expect = 8.1
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = +2
Query: 89 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG---FAFIEFENLQEAEDACS 247
VYV + + + +E+L F G++ V +P FAFIEF N + A A S
Sbjct: 171 VYVSDIDQQVTEENLAGVFINCGQVVDCRVCGDPNSVLRFAFIEFTNEEGARAALS 226
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 26.6 bits (56), Expect = 8.1
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = +2
Query: 116 IKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAM 253
+ ++L + F YG++ + N FIE+ ++++AE A A+
Sbjct: 281 VSNDELLQLFGAYGEIREIRETPNRRFHRFIEYYDVRDAETALKAL 326
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 26.6 bits (56), Expect = 8.1
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = +2
Query: 116 IKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAM 253
+ ++L + F YG++ + N FIE+ ++++AE A A+
Sbjct: 294 VSNDELLQLFGAYGEIREIRETPNRRFHRFIEYYDVRDAETALKAL 339
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 26.6 bits (56), Expect = 8.1
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Frame = +2
Query: 68 MSSGGT--RVYVGGLVEGIKKEDLEREFDKYG-----KLNSVWVALNPPGFAFIEFENLQ 226
M+SG R +VGGL LE F +YG K+ + GF F+ F++ +
Sbjct: 1 MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60
Query: 227 EAEDACSAM 253
+DA M
Sbjct: 61 AMKDAIEGM 69
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 26.6 bits (56), Expect = 8.1
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Frame = +2
Query: 68 MSSGGT--RVYVGGLVEGIKKEDLEREFDKYG-----KLNSVWVALNPPGFAFIEFENLQ 226
M+SG R +VGGL LE F +YG K+ + GF F+ F++ +
Sbjct: 1 MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60
Query: 227 EAEDACSAM 253
+DA M
Sbjct: 61 AMKDAIEGM 69
>At2g20720.1 68415.m02433 pentatricopeptide (PPR) repeat-containing
protein contains Pfam TIGR00756: pentatricopeptide
repeat domain
Length = 299
Score = 26.6 bits (56), Expect = 8.1
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 101 GLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAE 235
GL KE+ E+ D GK S W +L +E E+ +E E
Sbjct: 172 GLQHRCVKEEAEKVVDMLGKKESKWESLAHKVNTLVEDEDAKEEE 216
>At1g53650.1 68414.m06105 RNA-binding protein, putative similar to
RNA-binding protein GB:AAA86641 GI:1174153 from
[Arabidopsis thaliana]
Length = 314
Score = 26.6 bits (56), Expect = 8.1
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = +2
Query: 89 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG---FAFIEFENLQEAEDACS 247
VYV + + + +E L F G++ + +P FAF+EF + Q A A S
Sbjct: 130 VYVSDIDQSVTEEGLAGLFSSCGQVVDCRICGDPNSVLRFAFVEFSDDQGARSALS 185
>At1g26400.1 68414.m03220 FAD-binding domain-containing protein
similar to SP|P30986 reticuline oxidase precursor
(Berberine-bridge-forming enzyme) (BBE)
(Tetrahydroprotoberberine synthase) [Eschscholzia
californica]; contains PF01565 FAD binding domain
Length = 527
Score = 26.6 bits (56), Expect = 8.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 116 IKKEDLEREFDKYGKLNSVWVALNPPG 196
I KE LE+ + K N VW+ NP G
Sbjct: 380 IPKEGLEKIWKTMLKFNFVWIEFNPYG 406
>At1g03020.1 68414.m00274 glutaredoxin family protein contains
INTERPRO Domain IPR002109, Glutaredoxin
(thioltransferase)
Length = 102
Score = 26.6 bits (56), Expect = 8.1
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = -1
Query: 237 SSASCKFSNSMKAKPGGFSATQTEFSFPYLSNSRSRSSFLIPSTRPPTYTRV 82
S SC S+S+K+ G+ A T + +SN L+ PT V
Sbjct: 17 SKTSCCMSHSIKSLISGYGANSTVYELDEMSNGPEIERALVELGCKPTVPAV 68
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,657,309
Number of Sequences: 28952
Number of extensions: 141389
Number of successful extensions: 643
Number of sequences better than 10.0: 147
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 762235320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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