Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0636
         (626 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding famil...    31   0.83 
At5g65740.1 68418.m08273 expressed protein                             30   1.4  
At3g50810.1 68416.m05564 integral membrane protein, putative con...    29   3.3  
At5g18130.2 68418.m02128 expressed protein similar to unknown pr...    27   7.7  
At5g18130.1 68418.m02129 expressed protein similar to unknown pr...    27   7.7  
At1g75830.1 68414.m08808 plant defensin-fusion protein, putative...    27   7.7  
At1g72840.1 68414.m08425 disease resistance protein (TIR-NBS-LRR...    27   7.7  

>At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding family
           protein / CHD family protein similar to chromatin
           remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana]
           GI:6478518; contains Pfam profiles PF00271: Helicase
           conserved C-terminal domain, PF00176: SNF2 family
           N-terminal domain, PF00628: PHD-finger, PF00385:
           'chromo' (CHRromatin Organization MOdifier)
          Length = 2228

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 19/47 (40%), Positives = 24/47 (51%)
 Frame = -2

Query: 379 DVVISQTALMHVYVSSNLLLLSHQT*NHKSTKPTPNQESPIDIKTSD 239
           D+ +S+T   HV V   LL  +HQ    KST      E P+  KTSD
Sbjct: 486 DMKVSET---HVSVERELLEEAHQETGEKSTVADEEIEEPVAAKTSD 529


>At5g65740.1 68418.m08273 expressed protein 
          Length = 216

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -1

Query: 206 SRTFASCMR*SISYSFQRLCLSEWLQSV 123
           +RT  +C   S + SF  LCL++WL+S+
Sbjct: 161 TRTDYTCENISCNKSFHSLCLTDWLRSI 188


>At3g50810.1 68416.m05564 integral membrane protein, putative
           contains 4 transmembrane domains; contains Pfam PF04535
           : Domain of unknown function (DUF588);  similar to
           putative ethylene responsive element binding protein
           (GI:22135858) [Arabidopsis thaliana]
          Length = 235

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +2

Query: 347 MHKCSL*YNDIDSAFYSVWCRLICKYLS 430
           MHKC +   +ID+A  +++C + CK+ S
Sbjct: 164 MHKCKICEWEIDAASSALFCSMECKFRS 191


>At5g18130.2 68418.m02128 expressed protein similar to unknown
           protein (gb|AAF00631.1)
          Length = 251

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 115 KKSTDWSHSERQSLWKE 165
           KK  DW   ER +LWK+
Sbjct: 175 KKEVDWDEGERTNLWKK 191


>At5g18130.1 68418.m02129 expressed protein similar to unknown
           protein (gb|AAF00631.1)
          Length = 280

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 115 KKSTDWSHSERQSLWKE 165
           KK  DW   ER +LWK+
Sbjct: 175 KKEVDWDEGERTNLWKK 191


>At1g75830.1 68414.m08808 plant defensin-fusion protein, putative
           (PDF1.1) identical to SP|P30224 Cysteine-rich antifungal
           protein 1 precursor (AFP1) (Anther-specific protein S18
           homolog) {Arabidopsis thaliana}
          Length = 80

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -1

Query: 431 NSNICKLVCTTLNKMQN-RCRYITDCTYACIC 339
           NSN CK  C  L K ++  C Y+    + CIC
Sbjct: 46  NSNACKNQCINLEKARHGSCNYVFP-AHKCIC 76


>At1g72840.1 68414.m08425 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1183

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = +1

Query: 109 VIKKSTDWSHSERQSLWKEYEIDYLI 186
           ++++ +DW  S+++ LW   EI Y++
Sbjct: 493 IVRQESDWRPSKQRFLWDPTEIHYVL 518


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,179,873
Number of Sequences: 28952
Number of extensions: 264073
Number of successful extensions: 589
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)