Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0627
         (556 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55147| Best HMM Match : TPR_2 (HMM E-Value=1.8e-10)                 45   5e-05
SB_42562| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.63 
SB_42515| Best HMM Match : TPR_2 (HMM E-Value=2e-14)                   29   1.9  
SB_47299| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_22290| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_54632| Best HMM Match : TPR_1 (HMM E-Value=1.4e-20)                 27   7.8  

>SB_55147| Best HMM Match : TPR_2 (HMM E-Value=1.8e-10)
          Length = 559

 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 34/104 (32%), Positives = 43/104 (41%), Gaps = 4/104 (3%)
 Frame = +3

Query: 255 LDMEGVIAPDQTDESQDMGDPNXXXXXXXXXXXXXXXXXAMRAFSEQ----KYDEAINLY 422
           +D  GVI PD  DE   MGD +                               +EAI L+
Sbjct: 13  IDQTGVIEPD-VDEPVPMGDDSIESPLASLVMTFWLSVTGREKSGGSDTLGNLEEAIKLF 71

Query: 423 TAAIQFNPQSALLFAKRGTGVSKN*PTQ*CIKDCTHALELNCDS 554
           T AI  NP SA LFAKR +   +       I+DC  A ++N DS
Sbjct: 72  TDAIMKNPHSAPLFAKRASCFIRMKKPNAAIRDCDKAAQINPDS 115


>SB_42562| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 381 AFSEQKYDEAINLYTAAIQFNPQSALLFAKR 473
           AF +QKY+EA+ LYT A+  +  +   +  R
Sbjct: 130 AFKQQKYEEAVKLYTQALNQDRTNTAFYTNR 160


>SB_42515| Best HMM Match : TPR_2 (HMM E-Value=2e-14)
          Length = 1104

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +3

Query: 393 QKYDEAIN-LYTAAIQFNPQSALLFAKRGTGVSKN*PTQ*CIKDCTHALELNCDS 554
           +KY +AI+ L+     F    A L   R + + +      C+KDCT +L L  DS
Sbjct: 436 EKYSQAIDVLWKDKSHFKSALASLLYNRASCLGRIGDASGCVKDCTSSLNLIPDS 490


>SB_47299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 367

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/47 (27%), Positives = 27/47 (57%)
 Frame = +3

Query: 396 KYDEAINLYTAAIQFNPQSALLFAKRGTGVSKN*PTQ*CIKDCTHAL 536
           +YD+A++ + AA+   P+ ALL+ + G  ++    ++  +    HAL
Sbjct: 223 EYDKAVDCFQAAVIARPEDALLWNRLGATLANGGRSEEAVDAYRHAL 269


>SB_22290| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 485

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/54 (22%), Positives = 25/54 (46%)
 Frame = +3

Query: 381 AFSEQKYDEAINLYTAAIQFNPQSALLFAKRGTGVSKN*PTQ*CIKDCTHALEL 542
           A+ ++ +D A   +  A + NP +   +        +    + CIK+C  A+E+
Sbjct: 240 AYKKKDFDTAHKHFNNAKELNPDNMTFYTNNAAAFFEEGNYEECIKECLEAVEV 293


>SB_54632| Best HMM Match : TPR_1 (HMM E-Value=1.4e-20)
          Length = 1195

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +3

Query: 375 MRAFSEQKYDEAINLYTAAIQFNPQSALLFAKRGTGVSKN*PT 503
           M  F+ + +  A+N +T  ++ +PQ +  +  RGT  +K  P+
Sbjct: 107 MYRFNNENWTGAVNDFTEILEQDPQDSRAYTYRGTVFAKMDPS 149


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,842,276
Number of Sequences: 59808
Number of extensions: 271436
Number of successful extensions: 606
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)