Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0625
         (649 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    25   0.71 
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   1.6  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   2.2  
AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450 ...    21   6.6  
AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450 ...    21   6.6  

>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 24.6 bits (51), Expect = 0.71
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 324 CNA-RRPCQVRADDMVCATEVDVPLPAIVTPPLV 226
           CN   RP   + + M C  +VD+PL AIV   LV
Sbjct: 553 CNGDNRPADCQQNCM-CTHKVDIPLNAIVEIVLV 585


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 324 CNARRPCQVRADDMVCATEVDVPLPAIVTPPLV 226
           CN          + +C  +VD+PL AIV   LV
Sbjct: 553 CNGDNRPPDCGQNCMCTHQVDIPLNAIVEVVLV 585


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -2

Query: 300  VRADDMVCATEVDVP-LPAIVTPPLVSSDS 214
            VR   + C TE DVP  P  V   ++S+DS
Sbjct: 1187 VRTTPIHCQTEQDVPEAPIAVKALVMSTDS 1216


>AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 505

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 105 HLDAINCLST*SCQLIL 55
           HL A N LS   C+L+L
Sbjct: 83  HLAAANILSPEDCELVL 99


>AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q7 protein.
          Length = 505

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 105 HLDAINCLST*SCQLIL 55
           HL A N LS   C+L+L
Sbjct: 83  HLAAANILSPEDCELVL 99


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,603
Number of Sequences: 336
Number of extensions: 3493
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)