SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0625
         (649 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24515| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.021
SB_16725| Best HMM Match : DAGAT (HMM E-Value=1e-39)                   30   1.4  
SB_47020| Best HMM Match : Profilin (HMM E-Value=1.8)                  29   3.3  
SB_42811| Best HMM Match : SRCR (HMM E-Value=0)                        29   4.3  
SB_15712| Best HMM Match : Cadherin (HMM E-Value=0)                    29   4.3  
SB_27836| Best HMM Match : DUF92 (HMM E-Value=2.2e-09)                 28   7.5  
SB_23075| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_22107| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_46305| Best HMM Match : SSDP (HMM E-Value=2)                        27   9.9  

>SB_24515| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 36.3 bits (80), Expect = 0.021
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = +2

Query: 107 VTKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESL 223
           V +AAI G DG+ WA S GF +S+ E  +++   ++ S+
Sbjct: 7   VQRAAIHGLDGSCWATSSGFSVSQQEAMELLKSLKDGSV 45


>SB_16725| Best HMM Match : DAGAT (HMM E-Value=1e-39)
          Length = 571

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 303 GKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCGY 434
           G  G   + T Q ++I  Y E + P   ++V EKL +Y    G+
Sbjct: 528 GNEGAVAVLTSQCLLIGAYSEGMTPGCCSAVTEKLADYFRVNGF 571


>SB_47020| Best HMM Match : Profilin (HMM E-Value=1.8)
          Length = 404

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 306 KVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLG 410
           K G+  +KT   ++++LY + + P       EKLG
Sbjct: 42  KTGIVAIKTATLILVALYSQEMSPSICVEASEKLG 76


>SB_42811| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 854

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
 Frame = -2

Query: 450 RASTSNNHR*LNILLTSPRQMRPAEVGWVLHREK*PQLAVSSCNARRPCQVRADDMVCAT 271
           R ++ +N R L+I     R  +   +  +  R +  Q+ +    ++    V  DD++ ++
Sbjct: 229 RDTSLDNQRLLSIDGQQARVYQTRRLSNIQIRARSQQIVIEGLFSKDRGTVAIDDILISS 288

Query: 270 EVDVPL-PAIVTPPLV-SSDS 214
             D PL P+  TPP V SSDS
Sbjct: 289 SSDCPLTPSTATPPDVPSSDS 309


>SB_15712| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 1075

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = -2

Query: 327 SCNARRPCQVRADDMVCATEVDVPLPAIVTPPLVSSDSFSKPATIFATSSFEISKPSDF 151
           SC+  RP  +    +  AT+ D    AI+T  +VS +     +    T    ISKP D+
Sbjct: 124 SCSENRPIGLTVATLT-ATDADATTNAIITFVIVSGNEGEAFSIDKVTGDITISKPLDY 181


>SB_27836| Best HMM Match : DUF92 (HMM E-Value=2.2e-09)
          Length = 355

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +2

Query: 80  DKQLMASRCVTKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGGVTIAGSG 259
           D  LMA   +   A+A   G+ W+   G  I K    +++       + T+GGVTI G+ 
Sbjct: 174 DASLMAMAVL--GALACSCGDTWSSEIGTAI-KSHTPRLITTLRKVPVGTNGGVTIPGTV 230

Query: 260 TS 265
            S
Sbjct: 231 AS 232


>SB_23075| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 354

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = +2

Query: 71  DYVDKQLMASRCVTKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGGVTI 247
           D++ +Q+  S C+   A+A   G    K   F +  D   ++V   + ++L TS  + I
Sbjct: 249 DFIMRQIETSNCLRILALAERHGLKILKEAAFSVIMDNFTEVVETDDFKNLSTSQVIDI 307


>SB_22107| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 383

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 13/72 (18%)
 Frame = +2

Query: 59  MSWQDYVDKQLMASRCVT------KAAIAGHDGNV-WAKSE---GFEISKDEVAKIVAGF 208
           MSW  Y+D  L  ++  T      KA I G DG   W  +      ++  +E  KI   F
Sbjct: 112 MSWDSYIDNLLAQAKDATGNCHADKACIIGLDGGAPWTSAGHACAVKLQPEECTKIANCF 171

Query: 209 ENE---SLLTSG 235
           +N+   S ++SG
Sbjct: 172 KNKDFTSFMSSG 183


>SB_46305| Best HMM Match : SSDP (HMM E-Value=2)
          Length = 848

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/19 (68%), Positives = 13/19 (68%)
 Frame = -2

Query: 210 SKPATIFATSSFEISKPSD 154
           S P  IFA SSF I KPSD
Sbjct: 275 SPPLEIFAPSSFFIKKPSD 293


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,196,193
Number of Sequences: 59808
Number of extensions: 449151
Number of successful extensions: 1056
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -