BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0625 (649 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_24515| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.021 SB_16725| Best HMM Match : DAGAT (HMM E-Value=1e-39) 30 1.4 SB_47020| Best HMM Match : Profilin (HMM E-Value=1.8) 29 3.3 SB_42811| Best HMM Match : SRCR (HMM E-Value=0) 29 4.3 SB_15712| Best HMM Match : Cadherin (HMM E-Value=0) 29 4.3 SB_27836| Best HMM Match : DUF92 (HMM E-Value=2.2e-09) 28 7.5 SB_23075| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5 SB_22107| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9 SB_46305| Best HMM Match : SSDP (HMM E-Value=2) 27 9.9 >SB_24515| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 117 Score = 36.3 bits (80), Expect = 0.021 Identities = 15/39 (38%), Positives = 25/39 (64%) Frame = +2 Query: 107 VTKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESL 223 V +AAI G DG+ WA S GF +S+ E +++ ++ S+ Sbjct: 7 VQRAAIHGLDGSCWATSSGFSVSQQEAMELLKSLKDGSV 45 >SB_16725| Best HMM Match : DAGAT (HMM E-Value=1e-39) Length = 571 Score = 30.3 bits (65), Expect = 1.4 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = +3 Query: 303 GKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCGY 434 G G + T Q ++I Y E + P ++V EKL +Y G+ Sbjct: 528 GNEGAVAVLTSQCLLIGAYSEGMTPGCCSAVTEKLADYFRVNGF 571 >SB_47020| Best HMM Match : Profilin (HMM E-Value=1.8) Length = 404 Score = 29.1 bits (62), Expect = 3.3 Identities = 11/35 (31%), Positives = 19/35 (54%) Frame = +3 Query: 306 KVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLG 410 K G+ +KT ++++LY + + P EKLG Sbjct: 42 KTGIVAIKTATLILVALYSQEMSPSICVEASEKLG 76 >SB_42811| Best HMM Match : SRCR (HMM E-Value=0) Length = 854 Score = 28.7 bits (61), Expect = 4.3 Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 2/81 (2%) Frame = -2 Query: 450 RASTSNNHR*LNILLTSPRQMRPAEVGWVLHREK*PQLAVSSCNARRPCQVRADDMVCAT 271 R ++ +N R L+I R + + + R + Q+ + ++ V DD++ ++ Sbjct: 229 RDTSLDNQRLLSIDGQQARVYQTRRLSNIQIRARSQQIVIEGLFSKDRGTVAIDDILISS 288 Query: 270 EVDVPL-PAIVTPPLV-SSDS 214 D PL P+ TPP V SSDS Sbjct: 289 SSDCPLTPSTATPPDVPSSDS 309 >SB_15712| Best HMM Match : Cadherin (HMM E-Value=0) Length = 1075 Score = 28.7 bits (61), Expect = 4.3 Identities = 18/59 (30%), Positives = 27/59 (45%) Frame = -2 Query: 327 SCNARRPCQVRADDMVCATEVDVPLPAIVTPPLVSSDSFSKPATIFATSSFEISKPSDF 151 SC+ RP + + AT+ D AI+T +VS + + T ISKP D+ Sbjct: 124 SCSENRPIGLTVATLT-ATDADATTNAIITFVIVSGNEGEAFSIDKVTGDITISKPLDY 181 >SB_27836| Best HMM Match : DUF92 (HMM E-Value=2.2e-09) Length = 355 Score = 27.9 bits (59), Expect = 7.5 Identities = 19/62 (30%), Positives = 29/62 (46%) Frame = +2 Query: 80 DKQLMASRCVTKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGGVTIAGSG 259 D LMA + A+A G+ W+ G I K +++ + T+GGVTI G+ Sbjct: 174 DASLMAMAVL--GALACSCGDTWSSEIGTAI-KSHTPRLITTLRKVPVGTNGGVTIPGTV 230 Query: 260 TS 265 S Sbjct: 231 AS 232 >SB_23075| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 354 Score = 27.9 bits (59), Expect = 7.5 Identities = 15/59 (25%), Positives = 28/59 (47%) Frame = +2 Query: 71 DYVDKQLMASRCVTKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGGVTI 247 D++ +Q+ S C+ A+A G K F + D ++V + ++L TS + I Sbjct: 249 DFIMRQIETSNCLRILALAERHGLKILKEAAFSVIMDNFTEVVETDDFKNLSTSQVIDI 307 >SB_22107| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 383 Score = 27.5 bits (58), Expect = 9.9 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 13/72 (18%) Frame = +2 Query: 59 MSWQDYVDKQLMASRCVT------KAAIAGHDGNV-WAKSE---GFEISKDEVAKIVAGF 208 MSW Y+D L ++ T KA I G DG W + ++ +E KI F Sbjct: 112 MSWDSYIDNLLAQAKDATGNCHADKACIIGLDGGAPWTSAGHACAVKLQPEECTKIANCF 171 Query: 209 ENE---SLLTSG 235 +N+ S ++SG Sbjct: 172 KNKDFTSFMSSG 183 >SB_46305| Best HMM Match : SSDP (HMM E-Value=2) Length = 848 Score = 27.5 bits (58), Expect = 9.9 Identities = 13/19 (68%), Positives = 13/19 (68%) Frame = -2 Query: 210 SKPATIFATSSFEISKPSD 154 S P IFA SSF I KPSD Sbjct: 275 SPPLEIFAPSSFFIKKPSD 293 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 21,196,193 Number of Sequences: 59808 Number of extensions: 449151 Number of successful extensions: 1056 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 966 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1055 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1645141000 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -