Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0620
         (533 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)              166   9e-42
SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.19 
SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)                     33   0.19 
SB_52533| Best HMM Match : rve (HMM E-Value=2)                         31   0.45 
SB_20635| Best HMM Match : rve (HMM E-Value=0.91)                      31   0.59 
SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007)                  29   1.8  
SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.4  
SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_45260| Best HMM Match : RVT_1 (HMM E-Value=1.2)                     29   2.4  
SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7)                  29   2.4  
SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33)                     29   2.4  
SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)                 28   4.2  
SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)                 28   4.2  
SB_6385| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.00099)        28   4.2  
SB_45835| Best HMM Match : TLD (HMM E-Value=0.4)                       28   5.5  
SB_8063| Best HMM Match : Homeobox (HMM E-Value=8.5e-24)               28   5.5  
SB_30332| Best HMM Match : RVT_1 (HMM E-Value=2.7e-34)                 27   7.3  
SB_17882| Best HMM Match : ShTK (HMM E-Value=1e-05)                    27   7.3  
SB_31378| Best HMM Match : Herpes_UL55 (HMM E-Value=4.5)               27   9.6  
SB_47521| Best HMM Match : RVT_1 (HMM E-Value=7.2e-24)                 27   9.6  

>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score =  166 bits (404), Expect = 9e-42
 Identities = 81/104 (77%), Positives = 89/104 (85%), Gaps = 1/104 (0%)
 Frame = +2

Query: 200 QTREHLLVF-FTNQRIRDHYFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNG 376
           +T EH+ +F    +      FFLG +L DEVLKIMPVQKQTRAGQRTRFKAFVAIGD+NG
Sbjct: 24  KTLEHIYLFSLPIKEFEIIDFFLGAALKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDSNG 83

Query: 377 HIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKXHT 508
           H+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGK HT
Sbjct: 84  HVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHT 127



 Score = 61.7 bits (143), Expect = 4e-10
 Identities = 29/35 (82%), Positives = 31/35 (88%)
 Frame = +3

Query: 150 WVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEII 254
           WVPVTKLGRLV++ KI  LE IYLFSLPIKEFEII
Sbjct: 8   WVPVTKLGRLVKDLKIKTLEHIYLFSLPIKEFEII 42


>SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1049

 Score = 32.7 bits (71), Expect = 0.19
 Identities = 20/67 (29%), Positives = 33/67 (49%)
 Frame = -2

Query: 451 QLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHDLKNLIIQG 272
           ++ + NS  N   D        TNMT + + G  CL     + TC+ L   DL NL+ + 
Sbjct: 235 RILRRNSQPNDQADVARLQSLITNMTEIYSTGKVCL-NITRNNTCMSL-DPDLGNLMSRS 292

Query: 271 RAEEEIM 251
           R ++E++
Sbjct: 293 RNQDELV 299


>SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 657

 Score = 32.7 bits (71), Expect = 0.19
 Identities = 20/67 (29%), Positives = 33/67 (49%)
 Frame = -2

Query: 451 QLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHDLKNLIIQG 272
           ++ + NS  N   D        TNMT + + G  CL     + TC+ L   DL NL+ + 
Sbjct: 519 RILRRNSQPNDQADVARLQSLITNMTEIYSTGKVCL-NITRNNTCMSL-DPDLGNLMSRS 576

Query: 271 RAEEEIM 251
           R ++E++
Sbjct: 577 RNQDELV 583


>SB_52533| Best HMM Match : rve (HMM E-Value=2)
          Length = 212

 Score = 31.5 bits (68), Expect = 0.45
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +2

Query: 236 QRIRDHYFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 391
           QR+R     L    N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 81  QRLRSKANGLVERTNRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 132


>SB_20635| Best HMM Match : rve (HMM E-Value=0.91)
          Length = 748

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +2

Query: 236 QRIRDHYFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 391
           QR+R     L    N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 141 QRLRGKANGLVERTNRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 192


>SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007)
          Length = 280

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 19/44 (43%), Positives = 23/44 (52%)
 Frame = -2

Query: 424 NGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHDL 293
           N  G  LA  +   N+  +V NG K  + C LS T L LY HDL
Sbjct: 108 NAYGKSLAEFYNSNNL--IVLNGVK--QGCMLSPTLLNLYVHDL 147


>SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 945

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 278 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 391
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 811 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 848


>SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2211

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 278  NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 391
            N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 2008 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 2045


>SB_45260| Best HMM Match : RVT_1 (HMM E-Value=1.2)
          Length = 584

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = +3

Query: 159 VTKLGRLVREGKIDKLESIYLFSLPIKEFEIIISSSARP*MMRFLRSCLYRNKH 320
           + K+ RL     I++    Y FS P ++  + IS+  R    + +R+CL+RN +
Sbjct: 138 IDKVKRLNILRTINRYSDNYCFSKPCRQISVRISARTR--RRKDVRNCLFRNNN 189


>SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7)
          Length = 212

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 278 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 391
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 9   NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 46


>SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33)
          Length = 735

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 278 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 391
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 532 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 569


>SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)
          Length = 1130

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 328 TAHTFQGICCHWRQQRSYW 384
           TA  +  ICCH +Q + +W
Sbjct: 486 TADQYDAICCHTQQSKKFW 504


>SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
          Length = 897

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 326 GQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 415
           G++ + K F+A+G  NGH+     C  ++A
Sbjct: 356 GRKDKRKDFLALGLRNGHVEFRFSCGADIA 385


>SB_6385| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.00099)
          Length = 437

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 20/72 (27%), Positives = 36/72 (50%)
 Frame = +2

Query: 149 VGSCHQTRPSCSRRKNRQTREHLLVFFTNQRIRDHYFFLGPSLNDEVLKIMPVQKQTRAG 328
           +G+  +  P  S+RK ++  +   +  T +RI   +   GP   D+ +  +  +K+TRAG
Sbjct: 14  LGAHGEVGPCASKRKRKKVSKE--IDCTGKRISTTF---GPIEPDKRMATVASKKKTRAG 68

Query: 329 QRTRFKAFVAIG 364
            R     F+A G
Sbjct: 69  HRAFVTRFMAEG 80


>SB_45835| Best HMM Match : TLD (HMM E-Value=0.4)
          Length = 174

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +1

Query: 145 KSGFLSPNSAVLFAKEKSTNSRAFTCFLYQSKNSRSL 255
           KSG L     ++F  E   +S+AF C LY +KN  SL
Sbjct: 56  KSGRLGGMPNIVFNSEYQWSSKAFLCTLY-NKNGYSL 91


>SB_8063| Best HMM Match : Homeobox (HMM E-Value=8.5e-24)
          Length = 963

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -3

Query: 453 DSLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPA 322
           D+L+  IAP    A SLL      + P+++P A +AL  ++ P+
Sbjct: 365 DALSLQIAPSANNALSLLKGAYDALSPMIAPSANDALSLLKAPS 408


>SB_30332| Best HMM Match : RVT_1 (HMM E-Value=2.7e-34)
          Length = 1683

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +2

Query: 305  VQKQTRAGQRTRFKAFVAIGDNNGHIGLGV--KCSKEVATAIRGAIILAKLSVLPVRRGY 478
            +Q+ TR  +RT         +NN ++ LG+   C   + TA+ G     +L+ + ++ G 
Sbjct: 1460 IQENTRTSRRTDISYRQLQANNNKNLELGIWRHCGPAILTALSG----RRLACVKIQAGP 1515

Query: 479  W 481
            W
Sbjct: 1516 W 1516


>SB_17882| Best HMM Match : ShTK (HMM E-Value=1e-05)
          Length = 387

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +2

Query: 305 VQKQTRAGQRTRFKAFVAIGDNNGHIGLGV--KCSKEVATAIRGAIILAKLSVLPVRRGY 478
           +Q+ TR  +RT         +NN ++ LG+   C   + TA+ G     +L+ + ++ G 
Sbjct: 274 IQENTRTSRRTDISYRQLQANNNKNLELGIWRHCGPAILTALSG----RRLACVKIQAGP 329

Query: 479 W 481
           W
Sbjct: 330 W 330


>SB_31378| Best HMM Match : Herpes_UL55 (HMM E-Value=4.5)
          Length = 690

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +2

Query: 161 HQTRPSCSRRKNRQTREHLLVFFTNQRIRDHYFFLGPSL 277
           HQT PS ++   RQT   L V   N   R  +    PSL
Sbjct: 486 HQTNPSLAQSGTRQTLLSLRVASDNHFFRSEWHQTNPSL 524


>SB_47521| Best HMM Match : RVT_1 (HMM E-Value=7.2e-24)
          Length = 338

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 337 CALSGTCLFLYRHDLKNLIIQGRAEEEIMISNSL 236
           C LS T   LY HDL + + + + + E ++ NS+
Sbjct: 111 CVLSTTLFNLYLHDLSDSLRELQPQREGLVINSI 144


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,721,690
Number of Sequences: 59808
Number of extensions: 336459
Number of successful extensions: 1588
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1588
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)