Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0619
         (770 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6379| Best HMM Match : Proteasome (HMM E-Value=0)                   47   1e-05
SB_30122| Best HMM Match : YadA (HMM E-Value=2)                        30   1.8  
SB_10901| Best HMM Match : SAM_1 (HMM E-Value=2.5e-09)                 30   1.8  
SB_5361| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.1  
SB_9866| Best HMM Match : TP2 (HMM E-Value=0.27)                       29   3.1  
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.2  
SB_1277| Best HMM Match : DAO (HMM E-Value=6e-32)                      29   4.2  
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)                       28   7.3  
SB_5754| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.3  
SB_56512| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   9.6  

>SB_6379| Best HMM Match : Proteasome (HMM E-Value=0)
          Length = 909

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 20/41 (48%), Positives = 24/41 (58%)
 Frame = +1

Query: 145 LVFQVWTLSLPVVVIVHGNQEPHGWATVTWDNAFSPPAGCP 267
           L+F +   S P VV VHGNQ P   AT+ WDNAF+     P
Sbjct: 489 LLFNILATSFPCVVTVHGNQSPDAEATILWDNAFAEKGRVP 529



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 15/45 (33%), Positives = 28/45 (62%)
 Frame = +3

Query: 255 GRVPFAVPDKVTWGQLAETLSLKFSSATGGSLSEDNLRFLAEKIF 389
           GRVPF VPD + W ++A  ++ ++  +    LS++ L ++  K+F
Sbjct: 526 GRVPFVVPDSMPWPEVANAINHRWMLSNERGLSDEQLAYIGSKLF 570


>SB_30122| Best HMM Match : YadA (HMM E-Value=2)
          Length = 408

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +1

Query: 610 ARDLPAAVLRTPSWEGSPSLGPETATKYSAAAFTSRD 720
           A+ L    L TPS  G PSL   T T  +A +F + D
Sbjct: 9   AKFLVTTALNTPSTVGQPSLATPTTTATTATSFNTSD 45


>SB_10901| Best HMM Match : SAM_1 (HMM E-Value=2.5e-09)
          Length = 1472

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +1

Query: 610 ARDLPAAVLRTPSWEGSPSLGPETATKYSAAAFTSRD 720
           A+ L    L TPS  G PSL   T T  +A +F + D
Sbjct: 555 AKFLVTTALNTPSTVGQPSLATPTTTATTATSFNTSD 591


>SB_5361| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1562

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -1

Query: 728 SMRSRDVKAAAEYFVAVSGPSDGDPSQLGVRRTAAGRSRADTWTA 594
           S   RD+++ A   +  SG    DP +LGVRR   G S    W A
Sbjct: 369 SSEIRDMESGATRSLGTSG----DPERLGVRRAGQGGSGKTEWAA 409


>SB_9866| Best HMM Match : TP2 (HMM E-Value=0.27)
          Length = 1019

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = +3

Query: 150 LPGLDPVASGCGHSPRQPGAPRVGHRHVGQRLQSPGRVPF 269
           +P L P+A          GAP V HR  G  L SP RVP+
Sbjct: 289 MPKLTPIAPRGPSGSYPAGAPDVSHR--GSPLGSPWRVPY 326


>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4865

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +3

Query: 261  VPFA-VPDKVTWGQLAETLSLKFSSATGGSLSEDN 362
            +P A  P+K TWG+    + ++  S++GGS +E++
Sbjct: 2322 IPMAKTPEKKTWGEEHNQIRIEAMSSSGGSSAENS 2356


>SB_1277| Best HMM Match : DAO (HMM E-Value=6e-32)
          Length = 523

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 640 TPSWEGSPSLGPETATKYSAAAFTSRDLMLRSLAD 744
           TP  +GS  LGP     ++   +   D+ LR LAD
Sbjct: 350 TPRMDGSVWLGPNAVLAFAREGYNLLDINLRDLAD 384


>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 382

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +3

Query: 153 PGLDPVASGCGHSPRQPGAPRVGH-RHVGQRLQSPGRVPFAVPDKVTWGQLAET 311
           P   P +SG  +S   P  P + + +H+G ++  PG +P   P  + WG   +T
Sbjct: 295 PPPPPPSSGVSNSGMMP--PHMQNPQHMGHQMM-PGMMPQQFPPNLMWGMTGQT 345


>SB_5754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 542 WCDRLIMGFIQKKQAEDMLSKCPPG 616
           W  R +   IQKK A+++ + C PG
Sbjct: 13  WTSRAVTSHIQKKGAKEISNSCSPG 37


>SB_56512| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 1219

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
 Frame = -1

Query: 281 VGDSEGHPAGGLKALSHVTVAHPWGSWLPW---TMTTTGSDRVQTWKTSSPPP 132
           +G+SE   A    A     V   W +W  W   T+T  G  RV+    ++P P
Sbjct: 237 LGESEETEACNKDACPEPAVDGGWSAWTKWTACTVTCGGGTRVRERSCTNPAP 289


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,922,590
Number of Sequences: 59808
Number of extensions: 478443
Number of successful extensions: 1538
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1536
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)