Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0615
         (814 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)              174   8e-44
SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.48 
SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)                     32   0.48 
SB_23120| Best HMM Match : Mucin (HMM E-Value=0.033)                   30   1.9  
SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007)                  29   3.4  
SB_20635| Best HMM Match : rve (HMM E-Value=0.91)                      29   4.5  
SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.5  
SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_52533| Best HMM Match : rve (HMM E-Value=2)                         29   4.5  
SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7)                  29   4.5  
SB_22198| Best HMM Match : Borrelia_orfA (HMM E-Value=5.4)             29   4.5  
SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33)                     29   4.5  
SB_11456| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-40)                 29   5.9  
SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)                 28   7.8  
SB_25441| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  
SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)                 28   7.8  

>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score =  174 bits (423), Expect = 8e-44
 Identities = 85/104 (81%), Positives = 93/104 (89%), Gaps = 2/104 (1%)
 Frame = +3

Query: 213 QTREHLLVF-FTNQRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNG 389
           +T EH+ +F    + FEIIDFFLG +L DEVLKIMPVQKQTRAGQRTRFKAFVAIGD+NG
Sbjct: 24  KTLEHIYLFSLPIKEFEIIDFFLGAALKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDSNG 83

Query: 390 HIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGS-HT 518
           H+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG  HT
Sbjct: 84  HVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHT 127



 Score =  133 bits (321), Expect = 2e-31
 Identities = 59/83 (71%), Positives = 64/83 (77%)
 Frame = +2

Query: 509 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGN 688
           KPHTVPCKVTGKCGS  VRLIPAPRGTGIVSAPVPKKLLQMAG++DCYTS RG T TLGN
Sbjct: 124 KPHTVPCKVTGKCGSTRVRLIPAPRGTGIVSAPVPKKLLQMAGIEDCYTSTRGQTATLGN 183

Query: 689 FXXXXXXXXXXXXXXLTPDLWRD 757
           F              LTPD+W++
Sbjct: 184 FAKATFAAISETYAYLTPDMWKE 206



 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 24/31 (77%), Positives = 27/31 (87%)
 Frame = +1

Query: 163 WVPVTKLGRLVREGKIDKLESIYLFSLPIKD 255
           WVPVTKLGRLV++ KI  LE IYLFSLPIK+
Sbjct: 8   WVPVTKLGRLVKDLKIKTLEHIYLFSLPIKE 38


>SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1049

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = -3

Query: 464 QLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHDLKNLIIQG 285
           ++ + NS  N   D        TNMT + + G  CL     + TC+ L   DL NL+ + 
Sbjct: 235 RILRRNSQPNDQADVARLQSLITNMTEIYSTGKVCL-NITRNNTCMSL-DPDLGNLMSRS 292

Query: 284 RAEEEI 267
           R ++E+
Sbjct: 293 RNQDEL 298


>SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 657

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = -3

Query: 464 QLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHDLKNLIIQG 285
           ++ + NS  N   D        TNMT + + G  CL     + TC+ L   DL NL+ + 
Sbjct: 519 RILRRNSQPNDQADVARLQSLITNMTEIYSTGKVCL-NITRNNTCMSL-DPDLGNLMSRS 576

Query: 284 RAEEEI 267
           R ++E+
Sbjct: 577 RNQDEL 582


>SB_23120| Best HMM Match : Mucin (HMM E-Value=0.033)
          Length = 382

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -1

Query: 187 GRVW*QEPTLSGLPCRAHDHGRDHDRVHEDRHGLYLH 77
           G +W +   L  LP     H  DHDR H  RH   +H
Sbjct: 103 GFLWQKNGVLLSLPPPQFRHSHDHDRHHYHRHHNNIH 139


>SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007)
          Length = 280

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 19/44 (43%), Positives = 23/44 (52%)
 Frame = -3

Query: 437 NGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHDL 306
           N  G  LA  +   N+  +V NG K  + C LS T L LY HDL
Sbjct: 108 NAYGKSLAEFYNSNNL--IVLNGVK--QGCMLSPTLLNLYVHDL 147


>SB_20635| Best HMM Match : rve (HMM E-Value=0.91)
          Length = 748

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 291 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 404
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 155 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 192


>SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 945

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 291 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 404
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 811 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 848


>SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2211

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 291  NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 404
            N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 2008 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 2045


>SB_52533| Best HMM Match : rve (HMM E-Value=2)
          Length = 212

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 291 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 404
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 95  NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 132


>SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7)
          Length = 212

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 291 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 404
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 9   NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 46


>SB_22198| Best HMM Match : Borrelia_orfA (HMM E-Value=5.4)
          Length = 394

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = -1

Query: 667 TTS*RVAIL-YTSHLKKLLRNWRRHNTSTTRGRNQPDCYGTTLAGDLARDGVWLPILL 497
           T S +++IL YT +  +  RN++ +NT  T  R Q +   TT+   L  D   L ILL
Sbjct: 183 TDSEKLSILVYTRNSTQTARNYQYYNTRKTL-RRQRETINTTIHAKLYTDSEKLSILL 239


>SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33)
          Length = 735

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 291 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 404
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 532 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 569


>SB_11456| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-40)
          Length = 391

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 612 GTGADTIPVPRG-AGISRTVTEPHLPVTLQGTVCGFLSCY 496
           GT   T+P   G A ++  + E  +  TL  TV GF++C+
Sbjct: 228 GTSGSTLPSNEGRANLTVNIEEVKVTKTLFATVVGFVTCW 267


>SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)
          Length = 1130

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 341 TAHTFQGICCHWRQQRSYW 397
           TA  +  ICCH +Q + +W
Sbjct: 486 TADQYDAICCHTQQSKKFW 504


>SB_25441| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 932

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +2

Query: 542 KCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLG 685
           +CG+  +    + R   ++  P+P  L ++  +Q C   +  STGT G
Sbjct: 591 RCGTHALTKTVSERVPDVLKHPLPPPLQELQELQVCDPPSTSSTGTTG 638


>SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
          Length = 897

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 339 GQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 428
           G++ + K F+A+G  NGH+     C  ++A
Sbjct: 356 GRKDKRKDFLALGLRNGHVEFRFSCGADIA 385


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,382,780
Number of Sequences: 59808
Number of extensions: 599748
Number of successful extensions: 1583
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1582
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2263654701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)