BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0615 (814 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 162 3e-40 At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 161 4e-40 At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 161 7e-40 At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 161 7e-40 At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 161 7e-40 At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 161 7e-40 At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 47 1e-05 At1g72390.1 68414.m08373 expressed protein 31 1.2 At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim... 29 3.7 At5g01770.1 68418.m00096 transducin family protein / WD-40 repea... 29 4.9 At3g18530.1 68416.m02357 expressed protein similar to unknown pr... 29 4.9 At3g01450.1 68416.m00069 expressed protein 29 4.9 At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 6.4 At3g63100.1 68416.m07087 glycine-rich protein 28 8.5 At3g61940.1 68416.m06956 zinc transporter, putative similar to z... 28 8.5 At2g04050.1 68415.m00386 MATE efflux family protein similar to r... 28 8.5 >At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ribosomal protein S2 - Arabidopsis thaliana, SWISSPROT:RS2_ARATH Length = 276 Score = 162 bits (393), Expect = 3e-40 Identities = 73/91 (80%), Positives = 84/91 (92%), Gaps = 1/91 (1%) Frame = +3 Query: 249 QRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 428 + ++IID +GPSL DEV+KIMPVQKQTRAGQRTRFKAF+ +GD+NGH+GLGVKCSKEVA Sbjct: 74 KEYQIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVA 133 Query: 429 TAIRGAIILAKLSVLPVRRGYWGNKIGS-HT 518 TAIRGAIILAKLSV+P+RRGYWGNKIG HT Sbjct: 134 TAIRGAIILAKLSVVPIRRGYWGNKIGKPHT 164 Score = 118 bits (285), Expect = 4e-27 Identities = 52/83 (62%), Positives = 63/83 (75%) Frame = +2 Query: 509 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGN 688 KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST TLGN Sbjct: 161 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 220 Query: 689 FXXXXXXXXXXXXXXLTPDLWRD 757 F LTP+ W++ Sbjct: 221 FVKATFDCLQKTYGFLTPEFWKE 243 Score = 59.3 bits (137), Expect = 3e-09 Identities = 24/35 (68%), Positives = 32/35 (91%) Frame = +1 Query: 151 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKD 255 ++++WVPVTKLGRLV+EGKI K+E IYL SLP+K+ Sbjct: 41 EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKE 75 >At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) Length = 285 Score = 161 bits (392), Expect = 4e-40 Identities = 74/91 (81%), Positives = 83/91 (91%), Gaps = 1/91 (1%) Frame = +3 Query: 249 QRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 428 + ++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVA Sbjct: 83 KEYQIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 142 Query: 429 TAIRGAIILAKLSVLPVRRGYWGNKIGS-HT 518 TAIRGAIILAKLSV+PVRRGYWGNKIG HT Sbjct: 143 TAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 173 Score = 118 bits (285), Expect = 4e-27 Identities = 52/83 (62%), Positives = 63/83 (75%) Frame = +2 Query: 509 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGN 688 KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST TLGN Sbjct: 170 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 229 Query: 689 FXXXXXXXXXXXXXXLTPDLWRD 757 F LTP+ W++ Sbjct: 230 FVKATFDCLQKTYGFLTPEFWKE 252 Score = 51.6 bits (118), Expect = 6e-07 Identities = 21/35 (60%), Positives = 29/35 (82%) Frame = +1 Query: 151 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKD 255 ++++WVPVTKLGRLV G I ++E IYL SLP+K+ Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKE 84 >At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar to ribosomal protein S2 GI:430711 from [Drosophila melanogaster] Length = 284 Score = 161 bits (390), Expect = 7e-40 Identities = 74/91 (81%), Positives = 83/91 (91%), Gaps = 1/91 (1%) Frame = +3 Query: 249 QRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 428 + ++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVA Sbjct: 82 KEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 141 Query: 429 TAIRGAIILAKLSVLPVRRGYWGNKIGS-HT 518 TAIRGAIILAKLSV+PVRRGYWGNKIG HT Sbjct: 142 TAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 172 Score = 118 bits (285), Expect = 4e-27 Identities = 52/83 (62%), Positives = 63/83 (75%) Frame = +2 Query: 509 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGN 688 KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST TLGN Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 228 Query: 689 FXXXXXXXXXXXXXXLTPDLWRD 757 F LTP+ W++ Sbjct: 229 FVKATFDCLQKTYGFLTPEFWKE 251 Score = 54.4 bits (125), Expect = 9e-08 Identities = 23/35 (65%), Positives = 29/35 (82%) Frame = +1 Query: 151 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKD 255 ++ +WVPVTKLGRLV + KI KLE IYL SLP+K+ Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKE 83 >At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar to ribosomal protein S2 GI:939717 from [Urechis caupo] Length = 284 Score = 161 bits (390), Expect = 7e-40 Identities = 74/91 (81%), Positives = 83/91 (91%), Gaps = 1/91 (1%) Frame = +3 Query: 249 QRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 428 + ++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVA Sbjct: 82 KEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 141 Query: 429 TAIRGAIILAKLSVLPVRRGYWGNKIGS-HT 518 TAIRGAIILAKLSV+PVRRGYWGNKIG HT Sbjct: 142 TAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 172 Score = 118 bits (285), Expect = 4e-27 Identities = 52/83 (62%), Positives = 63/83 (75%) Frame = +2 Query: 509 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGN 688 KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST TLGN Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 228 Query: 689 FXXXXXXXXXXXXXXLTPDLWRD 757 F LTP+ W++ Sbjct: 229 FVKATFDCLQKTYGFLTPEFWKE 251 Score = 54.4 bits (125), Expect = 9e-08 Identities = 23/35 (65%), Positives = 29/35 (82%) Frame = +1 Query: 151 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKD 255 ++ +WVPVTKLGRLV + KI KLE IYL SLP+K+ Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKE 83 >At1g58684.1 68414.m06657 40S ribosomal protein S2, putative Length = 284 Score = 161 bits (390), Expect = 7e-40 Identities = 74/91 (81%), Positives = 83/91 (91%), Gaps = 1/91 (1%) Frame = +3 Query: 249 QRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 428 + ++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVA Sbjct: 82 KEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 141 Query: 429 TAIRGAIILAKLSVLPVRRGYWGNKIGS-HT 518 TAIRGAIILAKLSV+PVRRGYWGNKIG HT Sbjct: 142 TAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 172 Score = 118 bits (285), Expect = 4e-27 Identities = 52/83 (62%), Positives = 63/83 (75%) Frame = +2 Query: 509 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGN 688 KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST TLGN Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 228 Query: 689 FXXXXXXXXXXXXXXLTPDLWRD 757 F LTP+ W++ Sbjct: 229 FVKATFDCLQKTYGFLTPEFWKE 251 Score = 54.4 bits (125), Expect = 9e-08 Identities = 23/35 (65%), Positives = 29/35 (82%) Frame = +1 Query: 151 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKD 255 ++ +WVPVTKLGRLV + KI KLE IYL SLP+K+ Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKE 83 >At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar to ribosomal protein S2 GI:939717 from (Urechis caupo) Length = 284 Score = 161 bits (390), Expect = 7e-40 Identities = 74/91 (81%), Positives = 83/91 (91%), Gaps = 1/91 (1%) Frame = +3 Query: 249 QRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 428 + ++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVA Sbjct: 82 KEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 141 Query: 429 TAIRGAIILAKLSVLPVRRGYWGNKIGS-HT 518 TAIRGAIILAKLSV+PVRRGYWGNKIG HT Sbjct: 142 TAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 172 Score = 118 bits (285), Expect = 4e-27 Identities = 52/83 (62%), Positives = 63/83 (75%) Frame = +2 Query: 509 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGN 688 KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST TLGN Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 228 Query: 689 FXXXXXXXXXXXXXXLTPDLWRD 757 F LTP+ W++ Sbjct: 229 FVKATFDCLQKTYGFLTPEFWKE 251 Score = 54.4 bits (125), Expect = 9e-08 Identities = 23/35 (65%), Positives = 29/35 (82%) Frame = +1 Query: 151 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKD 255 ++ +WVPVTKLGRLV + KI KLE IYL SLP+K+ Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKE 83 >At2g33800.1 68415.m04147 ribosomal protein S5 family protein contains Pfam profiles PF03719: Ribosomal protein S5, C-terminal domain, PF00333: Ribosomal protein S5, N-terminal domain Length = 303 Score = 47.2 bits (107), Expect = 1e-05 Identities = 19/62 (30%), Positives = 40/62 (64%) Frame = +3 Query: 294 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 473 + V+++ V K + G++ +F+A V +GD G++G+G +KEV A++ + I A+ +++ Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208 Query: 474 PV 479 V Sbjct: 209 QV 210 Score = 40.7 bits (91), Expect = 0.001 Identities = 21/60 (35%), Positives = 31/60 (51%) Frame = +2 Query: 509 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGN 688 K T P + G G+ V L PA GTG+++ + +L+MAGV++ GS L N Sbjct: 214 KYSTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNN 273 >At1g72390.1 68414.m08373 expressed protein Length = 1088 Score = 30.7 bits (66), Expect = 1.2 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Frame = -3 Query: 728 HMSWQWQRMWL*QNFPRCQLNHELTCSNPVHQPSEE-AS*ELAQTQYQYHEGQESA 564 +M+ Q Q+ L Q + QL H+ P+ QPS++ A Q Q Q HE + A Sbjct: 920 YMNQQQQQQQLQQQPQQQQLQHQQQLQQPMSQPSQQLAQSPQQQQQLQQHEQPQQA 975 >At1g80480.1 68414.m09427 PRLI-interacting factor L, putative similar to PRLI-interacting factor L [Arabidopsis thaliana] GI:11139268; contains Pfam profile PF02492: Cobalamin synthesis protein/P47K Length = 444 Score = 29.1 bits (62), Expect = 3.7 Identities = 10/20 (50%), Positives = 11/20 (55%) Frame = -1 Query: 136 HDHGRDHDRVHEDRHGLYLH 77 HDH DHD H D H + H Sbjct: 320 HDHNHDHDHHHHDGHDHHHH 339 >At5g01770.1 68418.m00096 transducin family protein / WD-40 repeat family protein similar to WD-repeat protein mip1 (SP:P87141) [Schizosaccharomyces pombe] Length = 1354 Score = 28.7 bits (61), Expect = 4.9 Identities = 10/21 (47%), Positives = 15/21 (71%) Frame = -2 Query: 543 LPVTLQGTVCGFLSCYPSNLF 481 LP+ LQG + GF+ PSN++ Sbjct: 429 LPIVLQGAITGFILPLPSNIY 449 >At3g18530.1 68416.m02357 expressed protein similar to unknown protein GB:AAF24615 from [Arabidopsis thaliana] Length = 297 Score = 28.7 bits (61), Expect = 4.9 Identities = 22/72 (30%), Positives = 32/72 (44%) Frame = -1 Query: 502 LLPQ*PLRTGRTDSLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPARVCF 323 LL Q L++ + A R VA + H +P + P L P N R+R A CF Sbjct: 166 LLTQLLLKSSQDKRFVCEAAERALVAMTT-HVSPALLLPKLRPCLKNKSPRIRAKASACF 224 Query: 322 CTGMILRTSSFR 287 +G + R + R Sbjct: 225 -SGCVPRLEAAR 235 >At3g01450.1 68416.m00069 expressed protein Length = 326 Score = 28.7 bits (61), Expect = 4.9 Identities = 19/63 (30%), Positives = 28/63 (44%) Frame = -1 Query: 511 LPILLPQ*PLRTGRTDSLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPAR 332 L +LL Q L++ + A + VA + H +P + P L P N R+R A Sbjct: 163 LDLLLTQLLLKSSQDKRFVCEAAEKALVAMTA-HVSPALLLPKLQPFLKNRNPRIRAKAS 221 Query: 331 VCF 323 CF Sbjct: 222 TCF 224 >At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc transporter ZIP2 [Arabidopsis thaliana] gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron (Fe2+) permease (ZIP) family, PMID:11500563 Length = 353 Score = 28.3 bits (60), Expect = 6.4 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = +3 Query: 360 AFVAIGDNNGHIGLGVKCSKE 422 AFVA G NN H+G V S+E Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169 >At3g63100.1 68416.m07087 glycine-rich protein Length = 199 Score = 27.9 bits (59), Expect = 8.5 Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 4/35 (11%) Frame = -1 Query: 130 HGRDH----DRVHEDRHGLYLHRVIRIRRENRHVH 38 HGRDH DR H HG + HR R R H H Sbjct: 109 HGRDHRHGRDRGHHRGHGHHHHRGHRRGRGRGHGH 143 >At3g61940.1 68416.m06956 zinc transporter, putative similar to zinc transporter ZAT [Arabidopsis thaliana] gi|4206640|gb|AAD11757; similar to zinc transporter ZnT-2 [Rattus norvegicus] gi|1256378|gb|AAB02775; member of the cation diffusion facilitator (CDF) family, or cation efflux (CE) family, PMID:11500563 Length = 334 Score = 27.9 bits (59), Expect = 8.5 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%) Frame = -1 Query: 136 HDHGRDHDRVHEDRHG-LYLHRVIRIRRENRHVHRL 32 HDHG HD H HG Y R ++ +++ + + Sbjct: 158 HDHGHGHDHGHSHDHGHSYGERAEQLLEKSKEIRNI 193 >At2g04050.1 68415.m00386 MATE efflux family protein similar to ripening regulated protein DDTFR18 [Lycopersicon esculentum] GI:12231296; contains Pfam profile: PF01554 uncharacterized membrane protein family Length = 476 Score = 27.9 bits (59), Expect = 8.5 Identities = 12/18 (66%), Positives = 12/18 (66%) Frame = +2 Query: 515 HTVPCKVTGKCGSVTVRL 568 H VPCK T K G VTV L Sbjct: 11 HLVPCKDTWKSGQVTVEL 28 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,975,548 Number of Sequences: 28952 Number of extensions: 407245 Number of successful extensions: 1125 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 1046 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1121 length of database: 12,070,560 effective HSP length: 80 effective length of database: 9,754,400 effective search space used: 1853336000 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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