Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0613
(774 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c... 71 1e-12
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c... 66 2e-11
At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein... 64 1e-10
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein... 61 7e-10
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 56 3e-08
At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein... 52 3e-07
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein... 51 7e-07
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 49 3e-06
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 49 3e-06
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 49 3e-06
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 48 9e-06
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 48 9e-06
At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /... 47 1e-05
At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein... 47 1e-05
At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein... 40 0.002
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 38 0.006
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 38 0.006
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 38 0.007
At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein... 38 0.010
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 38 0.010
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 36 0.039
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 34 0.091
At3g43490.1 68416.m04611 zinc knuckle (CCHC-type) family protein... 33 0.16
At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein... 33 0.16
At4g19130.1 68417.m02823 replication protein-related similar to ... 33 0.21
At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar ... 33 0.28
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 33 0.28
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 32 0.37
At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)... 32 0.49
At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein... 31 0.64
At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PS... 31 0.64
At3g31950.1 68416.m04046 hypothetical protein 31 0.64
At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein... 31 0.64
At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein... 31 0.64
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 31 0.64
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 31 0.64
At4g06479.1 68417.m00885 hypothetical protein 31 1.1
At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kina... 31 1.1
At5g47430.1 68418.m05844 expressed protein 30 1.5
At5g47390.1 68418.m05840 myb family transcription factor contain... 30 1.5
At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein... 30 1.5
At4g39960.1 68417.m05660 DNAJ heat shock family protein similar ... 30 1.5
At4g17410.1 68417.m02607 expressed protein 30 1.5
At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein... 30 1.5
At3g45480.1 68416.m04911 zinc finger (C3HC4-type RING finger) fa... 30 1.5
At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PS... 30 1.5
At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PS... 30 1.5
At4g34710.2 68417.m04927 arginine decarboxylase 2 (SPE2) identic... 30 2.0
At4g34710.1 68417.m04926 arginine decarboxylase 2 (SPE2) identic... 30 2.0
At3g16350.1 68416.m02068 myb family transcription factor ; conta... 30 2.0
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 30 2.0
At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative s... 29 2.6
At5g51300.2 68418.m06360 splicing factor-related contains simila... 29 2.6
At5g51300.1 68418.m06359 splicing factor-related contains simila... 29 2.6
At1g75690.1 68414.m08793 chaperone protein dnaJ-related contains... 29 2.6
At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical ... 29 2.6
At5g61670.2 68418.m07738 expressed protein 29 3.4
At5g61670.1 68418.m07737 expressed protein 29 3.4
At4g06526.1 68417.m00938 hypothetical protein 29 3.4
At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak sim... 29 3.4
At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein... 29 3.4
At5g07270.1 68418.m00829 ankyrin repeat family protein contains ... 29 4.5
At5g06130.2 68418.m00682 chaperone protein dnaJ-related similar ... 29 4.5
At5g06130.1 68418.m00681 chaperone protein dnaJ-related similar ... 29 4.5
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 29 4.5
At2g38560.1 68415.m04737 transcription factor S-II (TFIIS) domai... 29 4.5
At5g34870.1 68418.m04106 zinc knuckle (CCHC-type) family protein... 28 6.0
At4g30200.3 68417.m04295 expressed protein contains weak similar... 28 6.0
At4g30200.2 68417.m04294 expressed protein contains weak similar... 28 6.0
At4g30200.1 68417.m04293 expressed protein contains weak similar... 28 6.0
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 28 6.0
At5g60930.1 68418.m07643 chromosome-associated kinesin, putative... 28 7.9
At4g05360.1 68417.m00818 zinc knuckle (CCHC-type) family protein... 28 7.9
At2g31850.1 68415.m03889 expressed protein 28 7.9
At2g22360.1 68415.m02653 DNAJ heat shock family protein similar ... 28 7.9
>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 299
Score = 70.5 bits (165), Expect = 1e-12
Identities = 30/65 (46%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Frame = +2
Query: 287 CYRCNGTGHIARECAQSPDEPS--CYNCNKTGHIARNCPEGGRESA--TQTCYNCNKSGH 454
CY C G GHIAR+CA + +PS CY C +GH+AR+C + G CY C K GH
Sbjct: 232 CYSCGGVGHIARDCA-TKRQPSRGCYQCGGSGHLARDCDQRGSGGGGNDNACYKCGKEGH 290
Query: 455 ISRNC 469
+R C
Sbjct: 291 FAREC 295
Score = 59.7 bits (138), Expect = 2e-09
Identities = 33/96 (34%), Positives = 43/96 (44%), Gaps = 22/96 (22%)
Frame = +2
Query: 281 DRCYRCNGTGHIARECAQSP------------DEPSCYNCNKTGHIARNCPE----GGRE 412
D CY C GH+AR+C Q CY C GH AR+C + G
Sbjct: 164 DGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGNVR 223
Query: 413 S---ATQTCYNCNKSGHISRNCP---DGTKTCYVCG 502
S + TCY+C GHI+R+C ++ CY CG
Sbjct: 224 SGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCG 259
Score = 56.0 bits (129), Expect = 3e-08
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 17/78 (21%)
Frame = +2
Query: 287 CYRCNGTGHIARECA----------QSPDEPSCYNCNKTGHIARNCPEGG---RESATQ- 424
CY C GHI+++C +S CYNC TGH AR+C G + AT+
Sbjct: 102 CYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKG 161
Query: 425 ---TCYNCNKSGHISRNC 469
CY C GH++R+C
Sbjct: 162 GNDGCYTCGDVGHVARDC 179
Score = 54.8 bits (126), Expect = 6e-08
Identities = 31/103 (30%), Positives = 41/103 (39%), Gaps = 31/103 (30%)
Frame = +2
Query: 287 CYRCNGTGHIARECAQSPD----------EPSCYNCNKTGHIARNCPE---------GGR 409
CY C TGH AR+C + + CY C GH+AR+C + G
Sbjct: 134 CYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAV 193
Query: 410 ESATQTCYNCNKSGHISRNCPD------------GTKTCYVCG 502
+ CY C GH +R+C G+ TCY CG
Sbjct: 194 KGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCG 236
Score = 44.0 bits (99), Expect = 1e-04
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +3
Query: 132 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHL 257
CY C TGHFAR+CT G + + C+ C GH+
Sbjct: 134 CYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHV 175
Score = 41.1 bits (92), Expect = 8e-04
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +3
Query: 132 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHL-RGIARKR 278
CY C GHFAR+CTQ C+ C GH+ R A KR
Sbjct: 200 CYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCATKR 249
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +3
Query: 132 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGH 254
CY+C +GH AR+C Q R SG C+KC + GH
Sbjct: 255 CYQCGGSGHLARDCDQ-----RGSGGGGNDNACYKCGKEGH 290
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +3
Query: 126 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGH 254
S CY C GH +++C GG +R E C+ C TGH
Sbjct: 100 SGCYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGH 142
Score = 37.5 bits (83), Expect = 0.010
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +3
Query: 132 CYKCNRTGHFARECTQGGVVSRD--SGFNRQREKCFKCNRTGH 254
CY C GH AR+CTQ V + D + C+ C GH
Sbjct: 166 CYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGH 208
Score = 35.1 bits (77), Expect = 0.052
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3
Query: 120 SSSVCYKCNRTGHFARECT 176
+ + CYKC + GHFAREC+
Sbjct: 278 NDNACYKCGKEGHFARECS 296
Score = 33.1 bits (72), Expect = 0.21
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +3
Query: 123 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHL 257
S CY C GH AR+C SR C++C +GHL
Sbjct: 229 SGTCYSCGGVGHIARDCATKRQPSRG---------CYQCGGSGHL 264
Score = 31.5 bits (68), Expect = 0.64
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 7/33 (21%)
Frame = +2
Query: 254 LARDCKEEA-------DRCYRCNGTGHIARECA 331
LARDC + + CY+C GH AREC+
Sbjct: 264 LARDCDQRGSGGGGNDNACYKCGKEGHFARECS 296
Score = 30.3 bits (65), Expect = 1.5
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 428 CYNCNKSGHISRNCPDG 478
CYNC + GHIS++C G
Sbjct: 102 CYNCGELGHISKDCGIG 118
>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 301
Score = 66.1 bits (154), Expect = 2e-11
Identities = 34/95 (35%), Positives = 46/95 (48%), Gaps = 20/95 (21%)
Frame = +2
Query: 281 DRCYRCNGTGHIARECAQS------PDEPSCYNCNKTGHIARNC----PEGGRESATQTC 430
D CY C G GH AR+C Q+ +CY C GHIA+ C P GG + C
Sbjct: 196 DGCYMCGGVGHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGG-GGGGRAC 254
Query: 431 YNCNKSGHISRNCP----------DGTKTCYVCGK 505
Y C +GH++R+C G+ C++CGK
Sbjct: 255 YECGGTGHLARDCDRRGSGSSGGGGGSNKCFICGK 289
Score = 59.7 bits (138), Expect = 2e-09
Identities = 35/99 (35%), Positives = 43/99 (43%), Gaps = 27/99 (27%)
Frame = +2
Query: 287 CYRCNGTGHIARECAQSPDEPS---------CYNCNKTGHIARNC----------PEGGR 409
CY C GH AR+C QS S CY+C + GH+A++C GGR
Sbjct: 132 CYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGR 191
Query: 410 ESATQTCYNCNKSGHISRNCPD--------GTKTCYVCG 502
S CY C GH +R+C G TCY CG
Sbjct: 192 GSGGDGCYMCGGVGHFARDCRQNGGGNVGGGGSTCYTCG 230
Score = 59.7 bits (138), Expect = 2e-09
Identities = 31/90 (34%), Positives = 41/90 (45%), Gaps = 19/90 (21%)
Frame = +2
Query: 257 ARDCKEEA--------DRCYRCNGTGHIARECAQSPDEP------SCYNCNKTGHIARNC 394
ARDC++ CY C G GHIA+ C +CY C TGH+AR+C
Sbjct: 208 ARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGGGGGGRACYECGGTGHLARDC 267
Query: 395 PEGGRESA-----TQTCYNCNKSGHISRNC 469
G S+ + C+ C K GH +R C
Sbjct: 268 DRRGSGSSGGGGGSNKCFICGKEGHFAREC 297
Score = 50.8 bits (116), Expect = 1e-06
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 20/85 (23%)
Frame = +2
Query: 287 CYRCNGTGHIAREC--------------AQSPDEPSCYNCNKTGHIARNCPE------GG 406
C+ C GH+A++C +S E CY C GH AR+C + GG
Sbjct: 96 CFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFARDCRQSGGGNSGG 155
Query: 407 RESATQTCYNCNKSGHISRNCPDGT 481
+ CY+C + GH++++C G+
Sbjct: 156 GGGGGRPCYSCGEVGHLAKDCRGGS 180
Score = 44.0 bits (99), Expect = 1e-04
Identities = 19/41 (46%), Positives = 23/41 (56%)
Frame = +3
Query: 132 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGH 254
CY+C TGH AR+C + G S SG KCF C + GH
Sbjct: 254 CYECGGTGHLARDCDRRG--SGSSGGGGGSNKCFICGKEGH 292
Score = 42.7 bits (96), Expect = 3e-04
Identities = 18/42 (42%), Positives = 21/42 (50%)
Frame = +3
Query: 132 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHL 257
CY C GHFAR+C Q G + G R C+ C GHL
Sbjct: 132 CYMCGDVGHFARDCRQSGGGNSGGGGGGGR-PCYSCGEVGHL 172
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 22/74 (29%)
Frame = +2
Query: 350 SCYNCNKTGHIARNCP----------EGGRESATQ-TCYNCNKSGHISRNCPD------- 475
+C+NC + GH+A++C GGR S + CY C GH +R+C
Sbjct: 95 NCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFARDCRQSGGGNSG 154
Query: 476 ----GTKTCYVCGK 505
G + CY CG+
Sbjct: 155 GGGGGGRPCYSCGE 168
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +3
Query: 132 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHLRGIARKRL 281
CY C GHFAR+C Q G + G C+ C GH+ + ++
Sbjct: 198 CYMCGGVGHFARDCRQNGGGNVGGG----GSTCYTCGGVGHIAKVCTSKI 243
Score = 37.1 bits (82), Expect = 0.013
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = +3
Query: 126 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHL 257
S CY C GH A+ CT + S G R C++C TGHL
Sbjct: 224 STCYTCGGVGHIAKVCT-SKIPSGGGGGGR---ACYECGGTGHL 263
Score = 33.5 bits (73), Expect = 0.16
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Frame = +3
Query: 132 CYKCNRTGHFARECTQGGVVSR---DSGFNRQREKCFKCNRTGH 254
CY C GH A++C G +R G + C+ C GH
Sbjct: 163 CYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGGVGH 206
Score = 32.7 bits (71), Expect = 0.28
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Frame = +3
Query: 120 SSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQ---REKCFKCNRTGH 254
S C+ C GH A++C G G S G R+ +C+ C GH
Sbjct: 92 SGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGH 140
Score = 32.3 bits (70), Expect = 0.37
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 123 SSVCYKCNRTGHFARECT 176
S+ C+ C + GHFARECT
Sbjct: 281 SNKCFICGKEGHFARECT 298
Score = 29.1 bits (62), Expect = 3.4
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +2
Query: 389 NCPEGGRESATQTCYNCNKSGHISRNCPDGT 481
N E + C+NC + GH++++C G+
Sbjct: 83 NKKENSSRGSGGNCFNCGEVGHMAKDCDGGS 113
>At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 268
Score = 63.7 bits (148), Expect = 1e-10
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Frame = +2
Query: 287 CYRCNGTGHIARECAQSPDEPS----CYNCNKTGHIARNCPEGGRESATQ--TCYNCNKS 448
C +C GH + C + +E S CYNC TGH +CP + T+ +C+ C
Sbjct: 101 CLQCRRRGHSLKNCPEKNNESSEKKLCYNCGDTGHSLSHCPYPMEDGGTKFASCFICKGQ 160
Query: 449 GHISRNCPDGTKTCYVCG 502
GHIS+NCP+ Y G
Sbjct: 161 GHISKNCPENKHGIYPMG 178
Score = 52.4 bits (120), Expect = 3e-07
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Frame = +2
Query: 275 EADRCYRCNGTGHIARECAQSPDE-----PSCYNCNKTGHIARNCPEG--GRESATQTCY 433
E CY C TGH C ++ SC+ C GHI++NCPE G C
Sbjct: 123 EKKLCYNCGDTGHSLSHCPYPMEDGGTKFASCFICKGQGHISKNCPENKHGIYPMGGCCK 182
Query: 434 NCNKSGHISRNCPD 475
C H+ ++CPD
Sbjct: 183 VCGSVAHLVKDCPD 196
Score = 51.2 bits (117), Expect = 7e-07
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Frame = +2
Query: 299 NGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDG 478
+ T H R P E C+ C+ HIA+ CPE + C C + GH +NCP+
Sbjct: 59 SSTRHPLRVPGMKPGE-GCFICHSKTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEK 117
Query: 479 T------KTCYVCG 502
K CY CG
Sbjct: 118 NNESSEKKLCYNCG 131
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = +3
Query: 123 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGH 254
+ +C +C R GH + C + + + +++ C+ C TGH
Sbjct: 98 NKICLQCRRRGHSLKNCPE------KNNESSEKKLCYNCGDTGH 135
>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 257
Score = 61.3 bits (142), Expect = 7e-10
Identities = 30/71 (42%), Positives = 37/71 (52%)
Frame = +2
Query: 257 ARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 436
ARDC C C GHIA EC E C+NC + GH+A NC G C++
Sbjct: 67 ARDCSN-VSVCNNCGLPGHIAAECTA---ESRCWNCREPGHVASNCSNEG------ICHS 116
Query: 437 CNKSGHISRNC 469
C KSGH +R+C
Sbjct: 117 CGKSGHRARDC 127
Score = 58.0 bits (134), Expect = 6e-09
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Frame = +2
Query: 254 LARDCKEEADRCYRCNGTGHIARECAQSP----DEPSCYNCNKTGHIARNCPEGGRESAT 421
+A +C E C+ C +GH AR+C+ S D C NC K GH+A +C +
Sbjct: 104 VASNCSNEGI-CHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGHLAADC------TND 156
Query: 422 QTCYNCNKSGHISRNCPDGTKTCYVC 499
+ C NC SGHI+R+C + C +C
Sbjct: 157 KACKNCRTSGHIARDCRN-DPVCNIC 181
Score = 57.6 bits (133), Expect = 9e-09
Identities = 27/77 (35%), Positives = 38/77 (49%)
Frame = +2
Query: 275 EADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGH 454
+ + C C GH AR+C+ + C NC GHIA C +A C+NC + GH
Sbjct: 53 QGNLCNNCKRPGHFARDCS---NVSVCNNCGLPGHIAAEC------TAESRCWNCREPGH 103
Query: 455 ISRNCPDGTKTCYVCGK 505
++ NC C+ CGK
Sbjct: 104 VASNC-SNEGICHSCGK 119
Score = 55.6 bits (128), Expect = 3e-08
Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Frame = +2
Query: 257 ARDCKEEADR------CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESA 418
ARDC R C C GH+A +C ++ +C NC +GHIAR+C
Sbjct: 124 ARDCSNSDSRAGDLRLCNNCFKQGHLAADCT---NDKACKNCRTSGHIARDCRN------ 174
Query: 419 TQTCYNCNKSGHISRNCPDG 478
C C+ SGH++R+CP G
Sbjct: 175 DPVCNICSISGHVARHCPKG 194
Score = 51.2 bits (117), Expect = 7e-07
Identities = 22/50 (44%), Positives = 32/50 (64%)
Frame = +2
Query: 254 LARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEG 403
LA DC + C C +GHIAR+C ++P C C+ +GH+AR+CP+G
Sbjct: 149 LAADCTNDK-ACKNCRTSGHIARDCR---NDPVCNICSISGHVARHCPKG 194
Score = 41.5 bits (93), Expect = 6e-04
Identities = 19/52 (36%), Positives = 26/52 (50%)
Frame = +2
Query: 353 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKP 508
C NC + GH AR+C S C NC GHI+ C ++ C+ C +P
Sbjct: 57 CNNCKRPGHFARDC------SNVSVCNNCGLPGHIAAECTAESR-CWNCREP 101
Score = 31.9 bits (69), Expect = 0.49
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Frame = +3
Query: 126 SVCYKCNRTGHFARECT------QGGVVSRDSGFNRQREKCFKCNRTGHL 257
++C C R GHFAR+C+ G+ + +C+ C GH+
Sbjct: 55 NLCNNCKRPGHFARDCSNVSVCNNCGLPGHIAAECTAESRCWNCREPGHV 104
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +3
Query: 120 SSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHL 257
+ +C+ C ++GH AR+C+ SR +G R CFK GHL
Sbjct: 110 NEGICHSCGKSGHRARDCSNSD--SR-AGDLRLCNNCFK---QGHL 149
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 56.0 bits (129), Expect = 3e-08
Identities = 32/91 (35%), Positives = 40/91 (43%), Gaps = 25/91 (27%)
Frame = +2
Query: 287 CYRCNGTGHIARECAQSPDEPS------------------CYNCNKTGHIARNCPEG--- 403
CYRC GH C + +E + CY C + GH AR CP
Sbjct: 287 CYRCGQLGHSGLACGRHYEESNENDSATPERLFNSREASECYRCGEEGHFARECPNSSSI 346
Query: 404 ----GRESATQTCYNCNKSGHISRNCPDGTK 484
GRES T CY CN SGH +R CP+ ++
Sbjct: 347 STSHGRESQT-LCYRCNGSGHFARECPNSSQ 376
Score = 52.0 bits (119), Expect = 4e-07
Identities = 24/56 (42%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
Frame = +2
Query: 275 EADRCYRCNGTGHIARECAQS---------PDEPSCYNCNKTGHIARNCPEGGRES 415
EA CYRC GH AREC S + CY CN +GH AR CP + S
Sbjct: 323 EASECYRCGEEGHFARECPNSSSISTSHGRESQTLCYRCNGSGHFARECPNSSQVS 378
Score = 48.4 bits (110), Expect = 5e-06
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Frame = +2
Query: 287 CYRCNGTGHIAREC-AQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISR 463
CY C GH + C + C+ C H A+ C +G CY C K+GH ++
Sbjct: 168 CYSCGEQGHTSFNCPTPTKRRKPCFICGSLEHGAKQCSKG------HDCYICKKTGHRAK 221
Query: 464 NCPD----GTK--TCYVCG 502
+CPD G+K C CG
Sbjct: 222 DCPDKYKNGSKGAVCLRCG 240
Score = 48.0 bits (109), Expect = 7e-06
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +2
Query: 287 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRE-SATQTCYNCNKSGH 454
C+ C H A++C++ D CY C KTGH A++CP+ + S C C GH
Sbjct: 191 CFICGSLEHGAKQCSKGHD---CYICKKTGHRAKDCPDKYKNGSKGAVCLRCGDFGH 244
Score = 48.0 bits (109), Expect = 7e-06
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +3
Query: 123 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGH 254
+S CY+C GHFAREC +S G + C++CN +GH
Sbjct: 324 ASECYRCGEEGHFARECPNSSSISTSHG-RESQTLCYRCNGSGH 366
Score = 43.6 bits (98), Expect = 1e-04
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +2
Query: 350 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGK 505
SCY+C + GH + NCP + + C+ C H ++ C G CY+C K
Sbjct: 167 SCYSCGEQGHTSFNCPTPTKR--RKPCFICGSLEHGAKQCSKG-HDCYICKK 215
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +3
Query: 120 SSSVCYKCNRTGHFARECTQGGVVS-RDSGFNRQREKCFKCNR 245
S ++CY+CN +GHFAREC VS RD + K K N+
Sbjct: 354 SQTLCYRCNGSGHFARECPNSSQVSKRDRETSTTSHKSRKKNK 396
Score = 39.5 bits (88), Expect = 0.002
Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 20/86 (23%)
Frame = +2
Query: 284 RCYRCNGTGHIARECAQSPDEP-----SCYNCNKTGHIARNC-----PEGGRESAT---- 421
+CY C GH+ C P SCY C + GH C +SAT
Sbjct: 262 QCYICKSFGHL---CCVEPGNSLSWAVSCYRCGQLGHSGLACGRHYEESNENDSATPERL 318
Query: 422 ------QTCYNCNKSGHISRNCPDGT 481
CY C + GH +R CP+ +
Sbjct: 319 FNSREASECYRCGEEGHFARECPNSS 344
Score = 38.7 bits (86), Expect = 0.004
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = +2
Query: 269 KEEADRCYRCNGTGHIARECAQS 337
+E CYRCNG+GH AREC S
Sbjct: 352 RESQTLCYRCNGSGHFARECPNS 374
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 8/49 (16%)
Frame = +3
Query: 132 CYKCNRTGHFARECTQGGVVSRDSG-------FN-RQREKCFKCNRTGH 254
CY+C + GH C + S ++ FN R+ +C++C GH
Sbjct: 287 CYRCGQLGHSGLACGRHYEESNENDSATPERLFNSREASECYRCGEEGH 335
>At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 254
Score = 52.4 bits (120), Expect = 3e-07
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 11/95 (11%)
Frame = +2
Query: 254 LARDCKEEADRCYRCNGTGHIARECA-----QSPDEPSCYNCNKTGHIARNCPEGGR-ES 415
+ R +EA+ C RC G GH C + CY CN GH+ C E G +S
Sbjct: 17 MPRHNDDEAEVCLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGHLC--CIEPGHTQS 74
Query: 416 ATQTCYNCNKSGHISRNC-----PDGTKTCYVCGK 505
T +CY C + GH C + +C++CG+
Sbjct: 75 WTVSCYRCGQLGHTGLACGRHYDDSVSPSCFICGR 109
Score = 52.0 bits (119), Expect = 4e-07
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Frame = +2
Query: 284 RCYRCNGTGHIARECAQSPDEP-----SCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 448
+CY CN GH+ C P SCY C + GH C +S + +C+ C +
Sbjct: 54 KCYVCNSLGHL---CCIEPGHTQSWTVSCYRCGQLGHTGLACGRHYDDSVSPSCFICGRE 110
Query: 449 GHISRNCPDGTKTCY 493
GH C + C+
Sbjct: 111 GHFEHQCHNSFSVCF 125
Score = 42.3 bits (95), Expect = 3e-04
Identities = 25/90 (27%), Positives = 34/90 (37%), Gaps = 21/90 (23%)
Frame = +2
Query: 287 CYRCNGTGHIARECAQSPDE---PSCYNCNKTGHIARNC--------PEGGRESATQTCY 433
CYRC GH C + D+ PSC+ C + GH C PE E Q
Sbjct: 79 CYRCGQLGHTGLACGRHYDDSVSPSCFICGREGHFEHQCHNSFSVCFPEDSSEDECQGPD 138
Query: 434 NCN----------KSGHISRNCPDGTKTCY 493
+ + + GH CPD + C+
Sbjct: 139 SSSVRFQENTREEEEGHFEHQCPDSSSVCF 168
Score = 35.9 bits (79), Expect = 0.030
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Frame = +2
Query: 308 GHIARECAQSPDEPS-CYN--CNKTGHIARNCPEGGRESATQT---CYNCNKSGHISRNC 469
GH +C PD S C+ + G I+ N +T CY C GHI+R+C
Sbjct: 154 GHFEHQC---PDSSSVCFQEISREEGFISLNSSSKSTSKGRETRRLCYECKGKGHIARDC 210
Query: 470 PDGTK 484
P+ ++
Sbjct: 211 PNSSQ 215
Score = 33.1 bits (72), Expect = 0.21
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 269 KEEADRCYRCNGTGHIARECAQS 337
+E CY C G GHIAR+C S
Sbjct: 191 RETRRLCYECKGKGHIARDCPNS 213
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 72 YISVLSAQEFSKPIAMSSSVCYKCNRTGHFARECTQGGVV 191
+IS+ S+ + + + +CY+C GH AR+C V
Sbjct: 177 FISLNSSSKSTSKGRETRRLCYECKGKGHIARDCPNSSQV 216
>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 372
Score = 51.2 bits (117), Expect = 7e-07
Identities = 34/101 (33%), Positives = 48/101 (47%), Gaps = 25/101 (24%)
Frame = +2
Query: 278 ADRCYRCNGTGHIAREC-AQSPD---EPS----------CYNCNKTGHIARNCP------ 397
A C++C GH +R+C AQS + EP CY C K GH +R+C
Sbjct: 267 AGDCFKCGKPGHWSRDCTAQSGNPKYEPGQMKSSSSSGECYKCGKQGHWSRDCTGQSSNQ 326
Query: 398 --EGGRESATQT---CYNCNKSGHISRNCPDGTKTCYVCGK 505
+ G+ +T + CY C K+GH SR+C +T GK
Sbjct: 327 QFQSGQAKSTSSTGDCYKCGKAGHWSRDCTSPAQTTNTPGK 367
Score = 50.4 bits (115), Expect = 1e-06
Identities = 30/81 (37%), Positives = 39/81 (48%), Gaps = 20/81 (24%)
Frame = +2
Query: 287 CYRCNGTGHIAREC-AQSPDEP--------SCYNCNKTGHIARNCP--------EGGR-- 409
CY+C GH AR+C QS P C+ C K GH +R+C E G+
Sbjct: 239 CYKCGKEGHWARDCTVQSDTGPVKSTSAAGDCFKCGKPGHWSRDCTAQSGNPKYEPGQMK 298
Query: 410 -ESATQTCYNCNKSGHISRNC 469
S++ CY C K GH SR+C
Sbjct: 299 SSSSSGECYKCGKQGHWSRDC 319
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +3
Query: 114 AMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQRE---KCFKCNRTGH 254
A + + CYKC + GH+AR+CT V D+G + CFKC + GH
Sbjct: 233 AKTGTPCYKCGKEGHWARDCT----VQSDTGPVKSTSAAGDCFKCGKPGH 278
Score = 41.5 bits (93), Expect = 6e-04
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = +3
Query: 120 SSSVCYKCNRTGHFARECT-QGGVVSRDSGFNRQREK---CFKCNRTGH 254
SS CYKC + GH++R+CT Q SG + C+KC + GH
Sbjct: 302 SSGECYKCGKQGHWSRDCTGQSSNQQFQSGQAKSTSSTGDCYKCGKAGH 350
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Frame = +3
Query: 87 SAQEFSKPIAMSSSV--CYKCNRTGHFARECT-QGGVVSRDSGFNRQRE---KCFKCNRT 248
+ Q + P+ +S+ C+KC + GH++R+CT Q G + G + +C+KC +
Sbjct: 253 TVQSDTGPVKSTSAAGDCFKCGKPGHWSRDCTAQSGNPKYEPGQMKSSSSSGECYKCGKQ 312
Query: 249 GH 254
GH
Sbjct: 313 GH 314
Score = 36.7 bits (81), Expect = 0.017
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = +3
Query: 87 SAQEFSKPIAMSSSV---CYKCNRTGHFARECTQGGVVSRDSGFNRQRE 224
S Q+F A S+S CYKC + GH++R+CT + G RQR+
Sbjct: 324 SNQQFQSGQAKSTSSTGDCYKCGKAGHWSRDCTSPAQTTNTPG-KRQRQ 371
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 49.2 bits (112), Expect = 3e-06
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +2
Query: 278 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 436
A RC+ C GH AR+C + CY C + GHI RNC ++ Y+
Sbjct: 57 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 109
Score = 48.0 bits (109), Expect = 7e-06
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +2
Query: 338 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 484
P C+NC GH AR+C G ++ CY C + GHI RNC + K
Sbjct: 55 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPK 100
Score = 34.3 bits (75), Expect = 0.091
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 132 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHL 257
C+ C GH+AR+CT G + KC++C GH+
Sbjct: 60 CFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHI 91
Score = 32.7 bits (71), Expect = 0.28
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 9/54 (16%)
Frame = +2
Query: 371 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCP--DGTKTCYVCGK 505
T +R P G R+ ++ C+NC GH +R+C D CY CG+
Sbjct: 34 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGE 87
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 49.2 bits (112), Expect = 3e-06
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +2
Query: 278 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 436
A RC+ C GH AR+C + CY C + GHI RNC ++ Y+
Sbjct: 68 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 120
Score = 48.0 bits (109), Expect = 7e-06
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +2
Query: 338 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 484
P C+NC GH AR+C G ++ CY C + GHI RNC + K
Sbjct: 66 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPK 111
Score = 34.3 bits (75), Expect = 0.091
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 132 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHL 257
C+ C GH+AR+CT G + KC++C GH+
Sbjct: 71 CFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHI 102
Score = 32.7 bits (71), Expect = 0.28
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 9/54 (16%)
Frame = +2
Query: 371 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCP--DGTKTCYVCGK 505
T +R P G R+ ++ C+NC GH +R+C D CY CG+
Sbjct: 45 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGE 98
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 49.2 bits (112), Expect = 3e-06
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +2
Query: 278 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 436
A RC+ C GH AR+C + CY C + GHI RNC ++ Y+
Sbjct: 98 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 150
Score = 48.0 bits (109), Expect = 7e-06
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +2
Query: 338 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 484
P C+NC GH AR+C G ++ CY C + GHI RNC + K
Sbjct: 96 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPK 141
Score = 34.3 bits (75), Expect = 0.091
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 132 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHL 257
C+ C GH+AR+CT G + KC++C GH+
Sbjct: 101 CFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHI 132
Score = 32.7 bits (71), Expect = 0.28
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 9/54 (16%)
Frame = +2
Query: 371 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCP--DGTKTCYVCGK 505
T +R P G R+ ++ C+NC GH +R+C D CY CG+
Sbjct: 75 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGE 128
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 47.6 bits (108), Expect = 9e-06
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +2
Query: 284 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 394
RC+ C GH AR+C + CY C + GHI RNC
Sbjct: 100 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 136
Score = 46.8 bits (106), Expect = 2e-05
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = +2
Query: 338 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 469
P C+NC GH AR+C G ++ CY C + GHI RNC
Sbjct: 96 PGSGRCFNCGVDGHWARDCTAGDWKN---KCYRCGERGHIERNC 136
Score = 35.9 bits (79), Expect = 0.030
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +2
Query: 257 ARDCK--EEADRCYRCNGTGHIARECAQSP 340
ARDC + ++CYRC GHI R C SP
Sbjct: 111 ARDCTAGDWKNKCYRCGERGHIERNCKNSP 140
Score = 34.7 bits (76), Expect = 0.069
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +3
Query: 123 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHL 257
S C+ C GH+AR+CT G + KC++C GH+
Sbjct: 98 SGRCFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHI 132
Score = 34.3 bits (75), Expect = 0.091
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 9/54 (16%)
Frame = +2
Query: 371 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCP--DGTKTCYVCGK 505
T +R P G R++ ++ C+NC GH +R+C D CY CG+
Sbjct: 75 TVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHWARDCTAGDWKNKCYRCGE 128
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 47.6 bits (108), Expect = 9e-06
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +2
Query: 284 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 394
RC+ C GH AR+C + CY C + GHI RNC
Sbjct: 59 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 95
Score = 46.8 bits (106), Expect = 2e-05
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = +2
Query: 338 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 469
P C+NC GH AR+C G ++ CY C + GHI RNC
Sbjct: 55 PGSGRCFNCGVDGHWARDCTAGDWKN---KCYRCGERGHIERNC 95
Score = 35.9 bits (79), Expect = 0.030
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +2
Query: 257 ARDCK--EEADRCYRCNGTGHIARECAQSP 340
ARDC + ++CYRC GHI R C SP
Sbjct: 70 ARDCTAGDWKNKCYRCGERGHIERNCKNSP 99
Score = 34.7 bits (76), Expect = 0.069
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +3
Query: 123 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHL 257
S C+ C GH+AR+CT G + KC++C GH+
Sbjct: 57 SGRCFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHI 91
Score = 34.3 bits (75), Expect = 0.091
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 9/54 (16%)
Frame = +2
Query: 371 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCP--DGTKTCYVCGK 505
T +R P G R++ ++ C+NC GH +R+C D CY CG+
Sbjct: 34 TVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHWARDCTAGDWKNKCYRCGE 87
>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
glycine-rich protein (GRP2) identical to Glycine-rich
protein 2b (AtGRP2b) [Arabidopsis thaliana]
SWISS-PROT:Q38896; contains Pfam domains PF00313:
'Cold-shock' DNA-binding domain and PF00098: Zinc
knuckle
Length = 201
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/64 (34%), Positives = 33/64 (51%)
Frame = +2
Query: 287 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 466
C++C GH+AREC+Q Y+ G + GG +CY+C +SGH +R+
Sbjct: 138 CFKCGEPGHMARECSQGGGG---YSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFARD 194
Query: 467 CPDG 478
C G
Sbjct: 195 CTSG 198
Score = 37.5 bits (83), Expect = 0.010
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +3
Query: 132 CYKCNRTGHFARECTQGG 185
CY C +GHFAR+CT GG
Sbjct: 182 CYSCGESGHFARDCTSGG 199
Score = 36.3 bits (80), Expect = 0.023
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +3
Query: 132 CYKCNRTGHFARECTQGG 185
C+KC GH AREC+QGG
Sbjct: 138 CFKCGEPGHMARECSQGG 155
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = +2
Query: 374 GHIARNCPEGGRESATQTCYNCNKSGHISRNCPDG 478
G+ R G +C+ C + GH++R C G
Sbjct: 120 GYGGRGSGGRGGGGGDNSCFKCGEPGHMARECSQG 154
>At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 119
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +2
Query: 341 DEPSCYNCNKTGHIARNCPEGGR-ESATQTCYNCNKSGHISRNCPD 475
D +CY C K GH AR+C + +A TCY C++ GH S CP+
Sbjct: 32 DPRACYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPN 77
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Frame = +2
Query: 287 CYRCNGTGHIAREC--AQSPDEP--SCYNCNKTGHIARNCPEGGRESATQT--CYNCNKS 448
CY+C GH AR C P +CY C++ GH + CP + CY C
Sbjct: 36 CYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNPKGHCYWCGNQ 95
Query: 449 GH 454
H
Sbjct: 96 DH 97
Score = 33.1 bits (72), Expect = 0.21
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +3
Query: 132 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGH-LRGIARKR 278
CYKC + GHFAR C VV++ + C+ C+ GH G KR
Sbjct: 36 CYKCGKLGHFARSC---HVVTQPT---TAYITCYFCSEEGHRSNGCPNKR 79
>At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 393
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Frame = +2
Query: 257 ARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQ-TCY 433
AR E+ + + N R + + C NC + GH CPE G + + C
Sbjct: 234 ARKHASESMKAFFSNPVNREQRSLSMKGTKFYCKNCGQEGHRRHYCPELGTNADRKFRCR 293
Query: 434 NCNKSGHISRNCP 472
C GH R CP
Sbjct: 294 GCGGKGHNRRTCP 306
Score = 33.5 bits (73), Expect = 0.16
Identities = 21/63 (33%), Positives = 27/63 (42%)
Frame = +2
Query: 284 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISR 463
+C C GH +R C + P+ N + +G N E G T C C K GH R
Sbjct: 322 KCGICGERGHNSRTCRK----PTGVNPSCSGE---NSGEDGVGKITYACGFCKKMGHNVR 374
Query: 464 NCP 472
CP
Sbjct: 375 TCP 377
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 38.3 bits (85), Expect = 0.006
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 117 MSSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQR 221
+ S CY+C GHFAREC +G G V R S R+R
Sbjct: 86 IEDSKCYECGELGHFARECRRGRGSVRRRSPSPRRR 121
Score = 29.9 bits (64), Expect = 2.0
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 341 DEPSCYNCNKTGHIARNCPEG 403
++ CY C + GH AR C G
Sbjct: 87 EDSKCYECGELGHFARECRRG 107
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 275 EADRCYRCNGTGHIAREC 328
E +CY C GH AREC
Sbjct: 87 EDSKCYECGELGHFAREC 104
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +2
Query: 401 GGRESATQT--CYNCNKSGHISRNCPDG 478
GGR + CY C + GH +R C G
Sbjct: 80 GGRRGGIEDSKCYECGELGHFARECRRG 107
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 38.3 bits (85), Expect = 0.006
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 117 MSSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQR 221
+ S CY+C GHFAREC +G G V R S R+R
Sbjct: 86 IEDSKCYECGELGHFARECRRGRGSVRRRSPSPRRR 121
Score = 29.9 bits (64), Expect = 2.0
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 341 DEPSCYNCNKTGHIARNCPEG 403
++ CY C + GH AR C G
Sbjct: 87 EDSKCYECGELGHFARECRRG 107
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 275 EADRCYRCNGTGHIAREC 328
E +CY C GH AREC
Sbjct: 87 EDSKCYECGELGHFAREC 104
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +2
Query: 401 GGRESATQT--CYNCNKSGHISRNCPDG 478
GGR + CY C + GH +R C G
Sbjct: 80 GGRRGGIEDSKCYECGELGHFARECRRG 107
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 37.9 bits (84), Expect = 0.007
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +3
Query: 132 CYKCNRTGHFARECTQGGVVSRDSGFNRQR 221
CY+C TGHFAREC G R +R R
Sbjct: 101 CYECGETGHFARECRNRGGTGRRRSKSRSR 130
Score = 31.5 bits (68), Expect = 0.64
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 401 GGRESATQTCYNCNKSGHISRNC 469
GGR + CY C ++GH +R C
Sbjct: 92 GGRGGSDLKCYECGETGHFAREC 114
Score = 31.1 bits (67), Expect = 0.85
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 284 RCYRCNGTGHIAREC 328
+CY C TGH AREC
Sbjct: 100 KCYECGETGHFAREC 114
Score = 30.3 bits (65), Expect = 1.5
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 353 CYNCNKTGHIARNCPEGG 406
CY C +TGH AR C G
Sbjct: 101 CYECGETGHFARECRNRG 118
>At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 831
Score = 37.5 bits (83), Expect = 0.010
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Frame = +2
Query: 236 VQPHRTLARDCKEEADR--CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP-EGG 406
+ P +LA + +EE C+ C GH R+C + D + + +N G
Sbjct: 585 IMPSGSLAENAEEEQRDLICFYCGKKGHCLRDCLEVTD-------TELRDLVQNISVRNG 637
Query: 407 RESATQTCYNCNKSGHISRNCPD 475
RE A+ C C + H + CP+
Sbjct: 638 REEASSLCIRCFQLSHWAATCPN 660
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 371 TGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKT 487
+G +A N E R+ C+ C K GH R+C + T T
Sbjct: 588 SGSLAENAEEEQRDLI---CFYCGKKGHCLRDCLEVTDT 623
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 37.5 bits (83), Expect = 0.010
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Frame = +2
Query: 287 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQ-------TCYNCNK 445
CY+C GH+AR+C++ G GG + +CY+C +
Sbjct: 131 CYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGGGSCYSCGE 190
Query: 446 SGHISRNCPDG 478
SGH +R+C G
Sbjct: 191 SGHFARDCTSG 201
Score = 37.5 bits (83), Expect = 0.010
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +3
Query: 132 CYKCNRTGHFARECTQGG 185
CY C +GHFAR+CT GG
Sbjct: 185 CYSCGESGHFARDCTSGG 202
Score = 36.7 bits (81), Expect = 0.017
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +2
Query: 350 SCYNCNKTGHIARNCPEGGR 409
SCY+C ++GH AR+C GGR
Sbjct: 184 SCYSCGESGHFARDCTSGGR 203
Score = 35.9 bits (79), Expect = 0.030
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 126 SVCYKCNRTGHFARECTQGG 185
S CYKC GH AR+C++GG
Sbjct: 129 SDCYKCGEPGHMARDCSEGG 148
Score = 31.1 bits (67), Expect = 0.85
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 401 GGRESATQTCYNCNKSGHISRNCPDG 478
GG CY C + GH++R+C +G
Sbjct: 122 GGGGRGGSDCYKCGEPGHMARDCSEG 147
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 35.5 bits (78), Expect = 0.039
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +3
Query: 132 CYKCNRTGHFAREC-TQGGVVSRDSGFNRQR 221
CY+C +GHFAREC ++GG R +R R
Sbjct: 98 CYECGESGHFARECRSRGGSGGRRRSRSRSR 128
Score = 30.3 bits (65), Expect = 1.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 404 GRESATQTCYNCNKSGHISRNC 469
GR + CY C +SGH +R C
Sbjct: 90 GRGGSDLKCYECGESGHFAREC 111
Score = 29.5 bits (63), Expect = 2.6
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 284 RCYRCNGTGHIAREC 328
+CY C +GH AREC
Sbjct: 97 KCYECGESGHFAREC 111
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +2
Query: 353 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCP 472
CY C ++GH AR C G + + ++S R P
Sbjct: 98 CYECGESGHFARECRSRGGSGGRRRSRSRSRSPPRYRKSP 137
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 34.3 bits (75), Expect = 0.091
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +3
Query: 132 CYKCNRTGHFARECTQGGVVSRDSG 206
C+KC + GHFAREC SRD G
Sbjct: 120 CFKCGKPGHFARECPSES--SRDGG 142
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Frame = +2
Query: 353 CYNCNKTGHIARNCPE------GGRESATQTCYNCNKSGHISRNCPDGTK 484
C+ C K GH AR CP GGR S+ Y+ + +++ G K
Sbjct: 120 CFKCGKPGHFARECPSESSRDGGGRFSSKDDRYSSKDDRYGAKDDRYGAK 169
>At3g43490.1 68416.m04611 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 260
Score = 33.5 bits (73), Expect = 0.16
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 3/28 (10%)
Frame = +2
Query: 425 TCYNCNKSGHISRNCPDGT---KTCYVC 499
TCY+C + HI+ +CP T K+C++C
Sbjct: 144 TCYSCGEKDHITVSCPTLTNCRKSCFIC 171
Score = 31.5 bits (68), Expect = 0.64
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +2
Query: 350 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 469
+CY+C + HI +CP + ++C+ C H +R C
Sbjct: 144 TCYSCGEKDHITVSCPT--LTNCRKSCFICASLEHGARQC 181
>At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein
contains Pfam profile: PF00098 zinc knuckle
Length = 262
Score = 33.5 bits (73), Expect = 0.16
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Frame = +2
Query: 353 CYNCNKTGHIARNC-------PEGGRESATQTCYNCNKSGHISRNCPDG 478
C+NC H+ARNC P+ S + + N G NC DG
Sbjct: 88 CFNCGDMNHLARNCLIPWVDVPDPYERSLSPPPHESNSDGSAEGNCGDG 136
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 10/55 (18%)
Frame = +2
Query: 287 CYRCNGTGHIAREC----AQSPD------EPSCYNCNKTGHIARNCPEGGRESAT 421
C+ C H+AR C PD P + N G NC +GG S T
Sbjct: 88 CFNCGDMNHLARNCLIPWVDVPDPYERSLSPPPHESNSDGSAEGNCGDGGTSSGT 142
>At4g19130.1 68417.m02823 replication protein-related similar to
replication protein A 70kDa [Oryza sativa] GI:13536993;
contains Pfam profile PF00098: Zinc knuckle
Length = 461
Score = 33.1 bits (72), Expect = 0.21
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +2
Query: 359 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 484
+ +++G + GG AT +C C SGH+S CP TK
Sbjct: 392 HAHQSGQSGNHYSGGG---ATTSCNVCGNSGHVSAKCPGATK 430
>At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar to
Chaperone protein dnaJ (SP:Q9WZV3) [Thermotoga maritima]
Length = 97
Score = 32.7 bits (71), Expect = 0.28
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +2
Query: 284 RCYRCNGTGHIARECAQ-SPDEPSCYNCNKTGHIA-RNCPEGG 406
RC CNGTG + C++ S + C C+ +G A NC G
Sbjct: 37 RCPTCNGTGRVTCFCSRWSDGDVGCRRCSGSGRAACSNCGGSG 79
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 32.7 bits (71), Expect = 0.28
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 132 CYKCNRTGHFARECTQGG 185
C+KC R GH+AR+C G
Sbjct: 128 CFKCGRVGHWARDCPSAG 145
Score = 32.3 bits (70), Expect = 0.37
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 344 EPSCYNCNKTGHIARNCPEGG 406
E C+ C + GH AR+CP G
Sbjct: 125 EDECFKCGRVGHWARDCPSAG 145
Score = 28.7 bits (61), Expect = 4.5
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +2
Query: 401 GGRESATQTCYNCNKSGHISRNCP 472
GG C+ C + GH +R+CP
Sbjct: 119 GGGRVGEDECFKCGRVGHWARDCP 142
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 32.3 bits (70), Expect = 0.37
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 407 RESATQTCYNCNKSGHISRNCPD 475
RES +C+ C KSGH + +CPD
Sbjct: 721 RESFGGSCFICGKSGHRATDCPD 743
Score = 28.7 bits (61), Expect = 4.5
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +2
Query: 350 SCYNCNKTGHIARNCPE 400
SC+ C K+GH A +CP+
Sbjct: 727 SCFICGKSGHRATDCPD 743
>At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)
identical to SP|Q9SI64 Arginine decarboxylase 1 (EC
4.1.1.19) (ARGDC 1) (ADC 1) (ADC-O) {Arabidopsis
thaliana}
Length = 702
Score = 31.9 bits (69), Expect = 0.49
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +1
Query: 340 GRAVMLQLQQDGPHRTELSRGGAGVCDADLL*LQQVRPHLPQLSRRHQ 483
G +V+ LQ DGPH ++R G AD+L Q P L + +H+
Sbjct: 578 GPSVVRVLQSDGPHGFAVTRAVMGQSSADVLRAMQHEPELMFQTLKHR 625
>At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 1080
Score = 31.5 bits (68), Expect = 0.64
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 395 PEGGRESATQTCYNCNKSGHISRNC 469
P + A + CY C K GH++R+C
Sbjct: 915 PSEETDDAVKICYRCKKVGHLARDC 939
Score = 30.7 bits (66), Expect = 1.1
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +3
Query: 129 VCYKCNRTGHFAREC 173
+CY+C + GH AR+C
Sbjct: 925 ICYRCKKVGHLARDC 939
Score = 30.3 bits (65), Expect = 1.5
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 353 CYNCNKTGHIARNC 394
CY C K GH+AR+C
Sbjct: 926 CYRCKKVGHLARDC 939
Score = 29.9 bits (64), Expect = 2.0
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 287 CYRCNGTGHIAREC 328
CYRC GH+AR+C
Sbjct: 926 CYRCKKVGHLARDC 939
>At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 532
Score = 31.5 bits (68), Expect = 0.64
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +2
Query: 341 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 448
D P C+NC H R CP SA + KS
Sbjct: 239 DPPRCFNCGGYSHSLRECPRPFDRSAVNSARKLQKS 274
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = +2
Query: 272 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG 406
++ RC+ C G H REC + D + + K RN G
Sbjct: 238 DDPPRCFNCGGYSHSLRECPRPFDRSAVNSARKLQKSKRNQNSSG 282
>At3g31950.1 68416.m04046 hypothetical protein
Length = 507
Score = 31.5 bits (68), Expect = 0.64
Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 5/87 (5%)
Frame = +2
Query: 227 VLQVQPHRT-LARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC--- 394
++ V PH + + R + R+ A +P + C C T H+ +C
Sbjct: 245 IIGVNPHSLGIGYGINSKVKPRIRATARKSVGRKLA-TPAKRPCDICGHTDHLTEDCLYS 303
Query: 395 -PEGGRESATQTCYNCNKSGHISRNCP 472
P CY C GH+S CP
Sbjct: 304 SPTMPYMDNYTKCYCCRGLGHVSMYCP 330
>At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 282
Score = 31.5 bits (68), Expect = 0.64
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 410 ESATQTCYNCNKSGHISRNCP 472
ESA C+ C + GH SR+CP
Sbjct: 2 ESAPTGCFKCGRPGHWSRDCP 22
Score = 29.9 bits (64), Expect = 2.0
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 132 CYKCNRTGHFARECTQGGVVS 194
C+KC R GH++R+C V+
Sbjct: 8 CFKCGRPGHWSRDCPSSAPVA 28
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/38 (23%), Positives = 17/38 (44%)
Frame = +2
Query: 353 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 466
C+ C + GH +R+CP + + + + I N
Sbjct: 8 CFKCGRPGHWSRDCPSSAPVAGNNSVSSSSAPSQIPNN 45
>At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 474
Score = 31.5 bits (68), Expect = 0.64
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 344 EPSCYNCNKTGHIARNCPEGGRESATQ 424
E +CY C + GHIA+ CP RE+ T+
Sbjct: 224 ELTCYRCKQEGHIAKICPT--RETTTK 248
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 425 TCYNCNKSGHISRNCPDGTKTCYV 496
TCY C + GHI++ CP T V
Sbjct: 226 TCYRCKQEGHIAKICPTRETTTKV 249
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 31.5 bits (68), Expect = 0.64
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 132 CYKCNRTGHFARECTQGG 185
C+KC R GH+AR+C G
Sbjct: 117 CFKCRRPGHWARDCPSTG 134
Score = 31.1 bits (67), Expect = 0.85
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 344 EPSCYNCNKTGHIARNCPEGG 406
E C+ C + GH AR+CP G
Sbjct: 114 EDECFKCRRPGHWARDCPSTG 134
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 269 KEEADRCYRCNGTGHIARECAQSPDE 346
K D C++C GH AR+C + D+
Sbjct: 111 KGTEDECFKCRRPGHWARDCPSTGDD 136
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 31.5 bits (68), Expect = 0.64
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 132 CYKCNRTGHFARECTQGG 185
C+KC R GH+AR+C G
Sbjct: 117 CFKCRRPGHWARDCPSTG 134
Score = 31.1 bits (67), Expect = 0.85
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 344 EPSCYNCNKTGHIARNCPEGG 406
E C+ C + GH AR+CP G
Sbjct: 114 EDECFKCRRPGHWARDCPSTG 134
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 269 KEEADRCYRCNGTGHIARECAQSPDE 346
K D C++C GH AR+C + D+
Sbjct: 111 KGTEDECFKCRRPGHWARDCPSTGDD 136
>At4g06479.1 68417.m00885 hypothetical protein
Length = 370
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 8/74 (10%)
Frame = +2
Query: 197 GFRFQSAT*EVLQVQPHRTLARDCKEEADR-CYRCNGTGHIARECAQSP-------DEPS 352
G+ S +Q +++ + A R C C+ T H EC P D
Sbjct: 267 GYGINSKVKPGIQATARKSVGKKLATPAKRPCEICSHTDHPTEECLYPPQTIPYTDDYAK 326
Query: 353 CYNCNKTGHIARNC 394
CY C GH++ C
Sbjct: 327 CYYCEGMGHMSMYC 340
>At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kinase
family protein low similarity to phosphatidylinositol
3,5-kinase [Candida albicans] GI:14571648; contains Pfam
profile PF01504: Phosphatidylinositol-4-phosphate
5-Kinase
Length = 1648
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = +2
Query: 260 RDCKEEAD-RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 436
RDC+ A RCY G AR C + PS N + I E G SA ++
Sbjct: 126 RDCRNMASIRCYPSRGEEEEARYCGKQLLSPSSDNYQDSSDI-----ESGSVSARHELFS 180
Query: 437 CNKS 448
C S
Sbjct: 181 CKSS 184
>At5g47430.1 68418.m05844 expressed protein
Length = 879
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +2
Query: 293 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG 406
R NG G E P C+ CN GH ++CP G
Sbjct: 191 RMNGRG-FGMERKTPPPGYVCHRCNIPGHFIQHCPTNG 227
Score = 28.7 bits (61), Expect = 4.5
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 129 VCYKCNRTGHFARECTQGG 185
VC++CN GHF + C G
Sbjct: 209 VCHRCNIPGHFIQHCPTNG 227
>At5g47390.1 68418.m05840 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 365
Score = 30.3 bits (65), Expect = 1.5
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 419 TQTCYNCNKSGHISRNCPD 475
T+ C +CN +GH SR CP+
Sbjct: 2 TRRCSHCNHNGHNSRTCPN 20
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +2
Query: 353 CYNCNKTGHIARNCPEGG 406
C +CN GH +R CP G
Sbjct: 5 CSHCNHNGHNSRTCPNRG 22
>At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 341
Score = 30.3 bits (65), Expect = 1.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 102 SKPIAMSSSVCYKCNRTGHFAREC 173
+KP + SVCY+C H+A+ C
Sbjct: 268 NKPRGKAKSVCYRCGMDDHWAKTC 291
>At4g39960.1 68417.m05660 DNAJ heat shock family protein similar to
SP|Q9S5A3 Chaperone protein dnaJ {Listeria
monocytogenes}; contains Pfam profiles PF00226 DnaJ
domain, PF01556 DnaJ C terminal region, PF00684 DnaJ
central domain (4 repeats)
Length = 447
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +2
Query: 281 DRCYRCNGTGHIARECAQSPDEPS-CYNCNKTGHIARNCPEG-GRESATQTCYNCNKSGH 454
+ C CNG+G A++ +P+ C C G + + G TC CN +G
Sbjct: 228 ESCGTCNGSG------AKAGTKPTKCKTCGGQGQVVASTRTPLGVFQQVMTCSPCNGTGE 281
Query: 455 ISRNC 469
IS+ C
Sbjct: 282 ISKPC 286
>At4g17410.1 68417.m02607 expressed protein
Length = 744
Score = 30.3 bits (65), Expect = 1.5
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 129 VCYKCNRTGHFARECTQGG 185
VC++CN +GHF + C+ G
Sbjct: 120 VCHRCNVSGHFIQHCSTNG 138
>At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein
contains Pfam profile PF00098: Zinc knuckle
Length = 200
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +2
Query: 314 IARECAQSPDEP-SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 466
++R+ ++S E +C+ C + GH +CP E + Y ++ RN
Sbjct: 147 VSRDRSKSKGEKGACWICGEDGHYKNDCPSRNSEKPKEHAYKAQEASVPRRN 198
>At3g45480.1 68416.m04911 zinc finger (C3HC4-type RING finger)
family protein contains a zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 373
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/72 (30%), Positives = 27/72 (37%), Gaps = 11/72 (15%)
Frame = +2
Query: 320 RECAQSPDEPSCYNCNKTGHIARNCPE---GGRESAT---QTCYNCNKSGHISRN----- 466
R C + C NC H +C E GRE T + C +C +S
Sbjct: 267 RRCCYKCRKHFCINCKVPWHSNLSCKEHKSSGREPITTVWRQCRSCLHKIKLSEERMPVT 326
Query: 467 CPDGTKTCYVCG 502
C G K CY CG
Sbjct: 327 CRCGYKFCYACG 338
>At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 403
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +2
Query: 272 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGR 409
++ RC+ C H REC + D + N + RN G R
Sbjct: 193 DDPPRCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSR 238
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +2
Query: 341 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 484
D P C+NC H R CP SA N + RN G++
Sbjct: 194 DPPRCFNCGAYSHSIRECPRPFDRSAVS---NARRQHKRKRNQTPGSR 238
>At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 405
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +2
Query: 272 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGR 409
++ RC+ C H REC + D + N + RN G R
Sbjct: 193 DDPPRCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSR 238
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +2
Query: 341 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 484
D P C+NC H R CP SA N + RN G++
Sbjct: 194 DPPRCFNCGAYSHSIRECPRPFDRSAVS---NARRQHKRKRNQTPGSR 238
>At4g34710.2 68417.m04927 arginine decarboxylase 2 (SPE2) identical
to SP|O23141 Arginine decarboxylase 2 (EC 4.1.1.19)
(ARGDC 2) (ADC 2) (ADC-N) {Arabidopsis thaliana}
Length = 711
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +1
Query: 340 GRAVMLQLQQDGPHRTELSRGGAGVCDADLL*LQQVRPHLPQLSRRHQ 483
G +V+ Q DGPH ++R G AD+L Q P L + +H+
Sbjct: 590 GPSVVRVSQSDGPHSFAVTRAVPGQSSADVLRAMQHEPELMFQTLKHR 637
>At4g34710.1 68417.m04926 arginine decarboxylase 2 (SPE2) identical
to SP|O23141 Arginine decarboxylase 2 (EC 4.1.1.19)
(ARGDC 2) (ADC 2) (ADC-N) {Arabidopsis thaliana}
Length = 711
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +1
Query: 340 GRAVMLQLQQDGPHRTELSRGGAGVCDADLL*LQQVRPHLPQLSRRHQ 483
G +V+ Q DGPH ++R G AD+L Q P L + +H+
Sbjct: 590 GPSVVRVSQSDGPHSFAVTRAVPGQSSADVLRAMQHEPELMFQTLKHR 637
>At3g16350.1 68416.m02068 myb family transcription factor ; contains
Pfam profile: PF00249 Myb-like DNA-binding domain
Length = 387
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +2
Query: 419 TQTCYNCNKSGHISRNCPD-GTKTC 490
T+ C +C+ +GH SR CP G TC
Sbjct: 2 TRRCSHCSNNGHNSRTCPTRGGGTC 26
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 29.9 bits (64), Expect = 2.0
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 269 KEEADRCYRCNGTGHIARECAQSP 340
K + + C++C T HIA++C P
Sbjct: 336 KGKGNGCFKCGSTDHIAKDCVGGP 359
>At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative
similar to Swiss-Prot:Q9NG98 DNA topoisomerase III alpha
[Drosophila melanogaster]
Length = 926
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +2
Query: 374 GHIARNCPEGGRESATQTCYNCNKSGHISRNCP 472
G N +G + C +C + GH S NCP
Sbjct: 749 GTAPSNNIQGSNTRQSNVCIHCQQRGHASTNCP 781
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = +2
Query: 353 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCG 502
C +C + GH + NCP S N + RN + T +C CG
Sbjct: 767 CIHCQQRGHASTNCP-----SRVPASRNSRPTATNPRN-DESTVSCNTCG 810
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +2
Query: 341 DEPSCYNCNKTGHIARNCPEGGRESATQT-CYNCNKSGHISRNCP 472
DE C C + GH CP + C C GH + +CP
Sbjct: 359 DEEFCRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDCP 403
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +2
Query: 341 DEPSCYNCNKTGHIARNCPEGGRESATQT-CYNCNKSGHISRNCP 472
DE C C + GH CP + C C GH + +CP
Sbjct: 359 DEEFCRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDCP 403
>At1g75690.1 68414.m08793 chaperone protein dnaJ-related contains
Pfam PF00684 : DnaJ central domain (4 repeats); similar
to bundle sheath defective protein 2 (GI:4732091) [Zea
mays]
Length = 154
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = +2
Query: 269 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 448
+E C+ CNGTG AQ C C +G++ GG E C NC+ +
Sbjct: 81 RENTQPCFPCNGTG------AQ-----KCRLCVGSGNVTVEL--GGGEKEVSNCINCDGA 127
Query: 449 GHIS 460
G ++
Sbjct: 128 GSLT 131
>At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical to
XRN4 [Arabidopsis thaliana] GI:11875626; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 947
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +2
Query: 314 IARECAQSP-DEPSCYNCNKTGHIARNCP 397
I RE P + C+ C +TGH A +CP
Sbjct: 251 ILREVITYPGQQEKCFVCGQTGHFASDCP 279
Score = 27.9 bits (59), Expect = 7.9
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 132 CYKCNRTGHFAREC 173
C+ C +TGHFA +C
Sbjct: 265 CFVCGQTGHFASDC 278
>At5g61670.2 68418.m07738 expressed protein
Length = 307
Score = 29.1 bits (62), Expect = 3.4
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Frame = +2
Query: 269 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP----EGGRES----ATQ 424
++E RC C GTG++A C C+ TG + P GG S T+
Sbjct: 224 QQEHKRCKYCLGTGYLA-----------CARCSSTGALVLTEPVSAIAGGNHSLSPPKTE 272
Query: 425 TCYNCNKSGHISRNCP 472
C NC+ +G + CP
Sbjct: 273 RCSNCSGAGKVM--CP 286
>At5g61670.1 68418.m07737 expressed protein
Length = 307
Score = 29.1 bits (62), Expect = 3.4
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Frame = +2
Query: 269 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP----EGGRES----ATQ 424
++E RC C GTG++A C C+ TG + P GG S T+
Sbjct: 224 QQEHKRCKYCLGTGYLA-----------CARCSSTGALVLTEPVSAIAGGNHSLSPPKTE 272
Query: 425 TCYNCNKSGHISRNCP 472
C NC+ +G + CP
Sbjct: 273 RCSNCSGAGKVM--CP 286
>At4g06526.1 68417.m00938 hypothetical protein
Length = 506
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 8/64 (12%)
Frame = +2
Query: 230 LQVQPHRTLARDCKEEADR-CYRCNGTGHIARECAQSP-------DEPSCYNCNKTGHIA 385
+Q +++ + A R C C+ T H +EC P D C C GH++
Sbjct: 262 IQATARKSVGKKLATPAKRPCEICSHTDHPTKECLYPPHTMPYMDDCAKCSCCGGVGHMS 321
Query: 386 RNCP 397
CP
Sbjct: 322 MYCP 325
>At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak
similarity to Chaperone protein dnaJ (Swiss-Prot:Q9ZFC5)
[Methylovorus sp.]
Length = 419
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Frame = +2
Query: 272 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEG---GRESATQTCYNCN 442
E ++C C G G + + EP Y N+ + G ++ + C NCN
Sbjct: 196 ETVEKCTGCTGRGDVVCPTCNADGEPGFYKENQMMKCSTCYGRGLVAHKDGSDTICTNCN 255
Query: 443 KSGHISRNCP 472
G + CP
Sbjct: 256 GKGKLP--CP 263
>At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein
contains INTERPRO domain, IPR001878: Zn-finger CCHC type
Length = 353
Score = 29.1 bits (62), Expect = 3.4
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 428 CYNCNKSGHISRNCPDGTKT 487
C++C++ GH ++NCP T T
Sbjct: 6 CFHCHQPGHWAKNCPLKTTT 25
Score = 29.1 bits (62), Expect = 3.4
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +2
Query: 353 CYNCNKTGHIARNCP 397
C++C++ GH A+NCP
Sbjct: 6 CFHCHQPGHWAKNCP 20
Score = 28.7 bits (61), Expect = 4.5
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 117 MSSSVCYKCNRTGHFAREC 173
MSS C+ C++ GH+A+ C
Sbjct: 1 MSSGDCFHCHQPGHWAKNC 19
>At5g07270.1 68418.m00829 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 513
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/48 (37%), Positives = 20/48 (41%)
Frame = -2
Query: 509 RACRTRSTSWCRRDSCGRCGRTCCSYSRSASQTPAPPRDSSVRCGPSC 366
R C T + C C RC CS S S T PP S+ C P C
Sbjct: 318 RTC-TVAAEGCEHQLCVRCALYLCSSSNVPSVTVGPP--GSIPC-PLC 361
>At5g06130.2 68418.m00682 chaperone protein dnaJ-related similar to
unknown protein (pir||T00468); contains Pfam PF00684 :
DnaJ central domain (4 repeats)
Length = 315
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +2
Query: 269 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 448
++E RC C GTG++ CA+ C + + R + + + T+ C NC+ +
Sbjct: 232 QQEKKRCKYCLGTGYL--PCARCSASGVCLSIDPITR-PRATNQLMQVATTKRCLNCSGA 288
Query: 449 GHISRNCP 472
G + CP
Sbjct: 289 GKVM--CP 294
>At5g06130.1 68418.m00681 chaperone protein dnaJ-related similar to
unknown protein (pir||T00468); contains Pfam PF00684 :
DnaJ central domain (4 repeats)
Length = 231
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +2
Query: 269 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 448
++E RC C GTG++ CA+ C + + R + + + T+ C NC+ +
Sbjct: 148 QQEKKRCKYCLGTGYL--PCARCSASGVCLSIDPITR-PRATNQLMQVATTKRCLNCSGA 204
Query: 449 GHISRNCP 472
G + CP
Sbjct: 205 GKVM--CP 210
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 28.7 bits (61), Expect = 4.5
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +2
Query: 422 QTCYNCNKSGHISRNCPD 475
+ CY C + GH+S CP+
Sbjct: 574 RNCYECGEKGHLSSACPN 591
Score = 28.3 bits (60), Expect = 6.0
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +2
Query: 422 QTCYNCNKSGHISRNCP 472
+ CY C + GH+S CP
Sbjct: 395 RVCYECGEKGHLSTACP 411
Score = 28.3 bits (60), Expect = 6.0
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +2
Query: 422 QTCYNCNKSGHISRNCP 472
+ CY C + GH+S CP
Sbjct: 479 RNCYECGEKGHLSTACP 495
>At2g38560.1 68415.m04737 transcription factor S-II (TFIIS)
domain-containing protein similar to SP|P49373
Transcription elongation factor S-II (TFIIS)
{Schizosaccharomyces pombe}; contains Pfam profile
PF01096: Transcription factor S-II (TFIIS)
Length = 378
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -2
Query: 464 CGRCGRTCCSYSRSASQTPAPPRDSSVRC 378
CGRCG+ C+Y + +++ P + V C
Sbjct: 340 CGRCGQRKCTYYQMQTRSADEPMTTYVTC 368
>At5g34870.1 68418.m04106 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 516
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 8/75 (10%)
Frame = +2
Query: 197 GFRFQSAT*EVLQVQPHRTLARDCKEEADRCYR-CNGTGHIARECAQSP-------DEPS 352
G+ S ++ +++ R A R + C H +C P D
Sbjct: 305 GYGINSKVKPRIRATARKSVRRKLPTPAKRPWEICGYIDHPTEQCLHPPQAMPYMVDCAK 364
Query: 353 CYNCNKTGHIARNCP 397
CY+C GH++ CP
Sbjct: 365 CYSCGGVGHVSMYCP 379
>At4g30200.3 68417.m04295 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 702
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +2
Query: 359 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 466
NCN H A E G E + SGHI +N
Sbjct: 594 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 629
>At4g30200.2 68417.m04294 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 714
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +2
Query: 359 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 466
NCN H A E G E + SGHI +N
Sbjct: 606 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 641
>At4g30200.1 68417.m04293 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 685
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +2
Query: 359 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 466
NCN H A E G E + SGHI +N
Sbjct: 577 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 612
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 90 AQEF-SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRD 200
A EF K + S CY+C GH + EC + + R+
Sbjct: 139 ASEFIKKRVYKDKSRCYECGDEGHLSYECPKNQLGPRE 176
Score = 28.3 bits (60), Expect = 6.0
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +2
Query: 272 EEADRCYRCNGTGHIARECAQS 337
++ RCY C GH++ EC ++
Sbjct: 149 KDKSRCYECGDEGHLSYECPKN 170
Score = 28.3 bits (60), Expect = 6.0
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +2
Query: 341 DEPSCYNCNKTGHIARNCPE 400
D+ CY C GH++ CP+
Sbjct: 150 DKSRCYECGDEGHLSYECPK 169
>At5g60930.1 68418.m07643 chromosome-associated kinesin, putative
microtubule-associated motor KIF4 , Mus musculus,
PIR:A54803
Length = 1294
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/62 (29%), Positives = 28/62 (45%)
Frame = -2
Query: 428 RSASQTPAPPRDSSVRCGPSCCSCNMTARPGSVRTRALCAQCRYICSNGQPLPCNPSQVS 249
RS + P D +V+ CC+C ++ S +T + QCR + P C S V
Sbjct: 1039 RSYEENSETPSDDAVKSDVCCCTC---SKSSSCKT--MKCQCRATKGSCGP-SCGCSSVK 1092
Query: 248 CA 243
C+
Sbjct: 1093 CS 1094
>At4g05360.1 68417.m00818 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 735
Score = 27.9 bits (59), Expect = 7.9
Identities = 20/65 (30%), Positives = 27/65 (41%)
Frame = +2
Query: 134 LQVQPDRAFRARMHAGGRGVAGFRFQSAT*EVLQVQPHRTLARDCKEEADRCYRCNGTGH 313
LQ +P R FR H G V G + +L+ + A D + +CY GH
Sbjct: 616 LQSEPRRVFRPVCHHCG--VVG-HIRPRCFRLLREKNRLMNAYDVRFHGPKCYHYGVQGH 672
Query: 314 IAREC 328
I R C
Sbjct: 673 IKRNC 677
>At2g31850.1 68415.m03889 expressed protein
Length = 113
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Frame = -2
Query: 476 RRDSCGRCGRT---CCSYSRSASQTPAPPRDSSVRCGPSCCSCNMTARPGS 333
R+D G G + C S S P S SCC C+ TA GS
Sbjct: 61 RQDDAGLSGSSTGSCSSPDSSTGSNSVPAPVPSPAPAGSCCCCSSTADSGS 111
>At2g22360.1 68415.m02653 DNAJ heat shock family protein similar to
SP|Q9S5A3 Chaperone protein dnaJ {Listeria
monocytogenes}; contains Pfam profiles PF00226 DnaJ
domain, PF01556 DnaJ C terminal region, PF00684 DnaJ
central domain (4 repeats)
Length = 442
Score = 27.9 bits (59), Expect = 7.9
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = +2
Query: 281 DRCYRCNGTGHIARECAQSPDEPS-CYNCNKTGHI--ARNCPEGGRESATQTCYNCNKSG 451
+ C C G+G A+ +P+ C C G + A P G + TC +CN +G
Sbjct: 222 ESCGTCEGSG------AKPGTKPTKCTTCGGQGQVVSAARTPLGVFQQV-MTCSSCNGTG 274
Query: 452 HISRNC 469
IS C
Sbjct: 275 EISTPC 280
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,662,467
Number of Sequences: 28952
Number of extensions: 322227
Number of successful extensions: 1500
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1375
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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