Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0610
         (568 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4559| Best HMM Match : ICAM_N (HMM E-Value=5.3)                     30   1.1  
SB_2673| Best HMM Match : UPF0154 (HMM E-Value=1.9)                    29   2.0  
SB_33362| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_53352| Best HMM Match : Collagen (HMM E-Value=0.11)                 29   2.6  
SB_43570| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_17018| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_54719| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.045)          27   8.1  
SB_21960| Best HMM Match : rve (HMM E-Value=4e-23)                     27   8.1  
SB_7045| Best HMM Match : rve (HMM E-Value=3.8e-22)                    27   8.1  

>SB_4559| Best HMM Match : ICAM_N (HMM E-Value=5.3)
          Length = 244

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
 Frame = +1

Query: 118 NSRIKMATSVLQPEDCRREHEPKPDI----IESPRLTDDERVHILEAKERRP 261
           N     +TS  QP +CRR   PK  I    +++  +T ++ VH+++  +  P
Sbjct: 111 NGNTHYSTSRRQPRNCRRVFPPKNPINLVRVDNTTVTVEKIVHVIDTDDESP 162


>SB_2673| Best HMM Match : UPF0154 (HMM E-Value=1.9)
          Length = 322

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +3

Query: 255 ETGELPPELREKARIELREDPILREEALNQMR 350
           E   L  ELR+KAR E  +D I+R+E LN ++
Sbjct: 8   ELTNLFSELRKKARKEGEDDGIIRKELLNSVK 39


>SB_33362| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +3

Query: 255 ETGELPPELREKARIELREDPILREEALNQMR 350
           E   L  ELR+KAR E  +D I+R+E LN ++
Sbjct: 8   ELTNLFSELRKKARKEGEDDGIIRKELLNSVK 39


>SB_53352| Best HMM Match : Collagen (HMM E-Value=0.11)
          Length = 348

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 364 SILRLKNAVKMHHSCCVSCVQRNTQYPRPARCWXRY 471
           ++ RL+ A  + ++C   C  R+T YP  ARC+  Y
Sbjct: 310 NLKRLQAASLVQYNC--QCRGRDTSYPSTARCYIHY 343


>SB_43570| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -2

Query: 78  HLITL-LLFTERIHKGIHKFNSLLNTH 1
           HL TL L+FT+RI+  ++ F  + N H
Sbjct: 65  HLFTLHLVFTQRINTALNDFKEMFNNH 91


>SB_17018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 706

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 91  LDFPLDFKFNSRIKMATSVLQPEDCRREH 177
           LDF +D   + R+ MA++++Q   C R H
Sbjct: 621 LDFCVDHPTDDRVAMASTLIQSSPCLRTH 649


>SB_54719| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.045)
          Length = 782

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +1

Query: 103 LDFKFNSRIKMATSVLQPEDCRREHEPKPDIIESPRLTDDERVHILEAKE 252
           L FK  ++IK+ T++L  +D     EP    ++SP L       +++++E
Sbjct: 712 LQFKEQAQIKVLTALLPFKDEAPTDEPSDPGVDSPSLVQSVLEAVIQSEE 761


>SB_21960| Best HMM Match : rve (HMM E-Value=4e-23)
          Length = 1109

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +1

Query: 169 REHEPKPDIIE-SPRLTDDERVHILEAKER 255
           R H P P + E SP+LT+ + + +++AK+R
Sbjct: 327 RNHYPTPTVDEVSPKLTNAKVLSVVDAKDR 356


>SB_7045| Best HMM Match : rve (HMM E-Value=3.8e-22)
          Length = 1213

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +1

Query: 169 REHEPKPDIIE-SPRLTDDERVHILEAKER 255
           R H P P + E SP+LT+ + + +++AK+R
Sbjct: 427 RNHYPTPTVDEVSPKLTNAKVLSVVDAKDR 456


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,679,378
Number of Sequences: 59808
Number of extensions: 319181
Number of successful extensions: 739
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)