Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0608
         (777 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38526| Best HMM Match : Gaa1 (HMM E-Value=0.51)                     32   0.60 
SB_56456| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_36968| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_44679| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_6281| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.2  
SB_16460| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_25593| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.7  
SB_5247| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.7  

>SB_38526| Best HMM Match : Gaa1 (HMM E-Value=0.51)
          Length = 189

 Score = 31.9 bits (69), Expect = 0.60
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +1

Query: 364 VLRGVCFSIKNNLEYFYATFFFFV 435
           VL G+C S+ N LE F+ +FFF++
Sbjct: 67  VLEGICRSLNNLLERFHQSFFFYL 90


>SB_56456| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1266

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +1

Query: 145 RPSSAKTRVQTKLTRPRCSQGSVKDTPKYSEPNNHQEAVIVQFSRVKDLSGQCCVVL 315
           RPSS +   +TK   PR  + + + TPK S+ +N   A   Q  R K ++      L
Sbjct: 404 RPSSRRNPRETKTNTPRSRRSNSRKTPK-SKKSNLSTAASDQSERSKSIASHASTSL 459


>SB_36968| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 295

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
 Frame = +1

Query: 1   TGRISRTKWTKES*LAALRDTSPAVTRSKRYTGADRRKTARAC*RPPKRPSSAKT-RVQT 177
           T + SR +  + S  ++   +SP     K+ + A +R+++ +    PKR +  K  R+++
Sbjct: 48  TSQRSRARKRQSSSSSSTTSSSPERNIKKKSSKAPKRQSSSSSSSSPKRKTKKKQHRLKS 107

Query: 178 KLTRPRCSQGSVKDTPKYSEPN 243
             TR + S  S   +P+    N
Sbjct: 108 GNTRSQTSSSSAASSPERKSGN 129


>SB_44679| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 180

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +1

Query: 145 RPSSAKTRVQTKLTRPRCSQGSVKDTPKYSEPNNHQEAVIVQFSRVKDLSGQCC 306
           +P      +Q    R +    S +  P+Y+  NN   A+  Q+SR K  S QCC
Sbjct: 15  KPEKLPLHIQRATKRNKIFVISPRVKPRYT--NNRTTAICGQYSRSKRKSYQCC 66


>SB_6281| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = +1

Query: 133 RPPK-RPSSAKTRVQTKLTRPRCSQGSVKD-TPKYSEPNNHQEAVIVQFSRVKDL 291
           RPP  RP SAK R +++  RP  SQ    D  P +       +   V FSR   L
Sbjct: 116 RPPSSRPQSAKGRPRSRSGRPMSSQSRGSDIIPDHEMQPKQLQQQCVSFSRYTPL 170


>SB_16460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 181 LTRPRCSQGSVKDTPKYSEPNNHQEAVIVQFSRVKD 288
           L   R  Q   K  P+Y EPN +Q +V+V+ S +++
Sbjct: 248 LKNSRIKQTPPKKIPRYVEPNANQRSVVVRVSLLEN 283


>SB_25593| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 746

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 109 RKTARAC*RPPKRPSSAKTRVQTKLT 186
           R+ ARAC R PK PS++ T    K T
Sbjct: 541 RRDARACARAPKMPSASYTHQSRKAT 566


>SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3293

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +1

Query: 142 KRPSSAKTRVQTKLTRPRCSQGSVKDTPKYSEPNNHQEAVIVQ 270
           KRP  A +R+QT L +   +Q +VK +P    P+  ++  I+Q
Sbjct: 685 KRPQCATSRIQTPLVQ---NQSNVKSSPPDIGPSRIEDTNILQ 724


>SB_5247| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 270

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +3

Query: 480 LNLKKRFVSLTINVESYVA*YVRLGDTNSLGSHFEGYTNM---SK*MLSYCPVC 632
           ++++KR VSL   +E   + YV +  TNS   H +  T +   S  M SYC  C
Sbjct: 110 IDVEKRVVSLEEILEKLSSGYVAIALTNSYMLHCDWCTPLDTYSMIMASYCSKC 163


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,394,238
Number of Sequences: 59808
Number of extensions: 470815
Number of successful extensions: 998
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)