Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0608
         (777 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g14800.1 68415.m01677 hypothetical protein                          29   4.5  
At2g04810.1 68415.m00494 F-box family protein contains F-box dom...    29   4.5  
At1g56590.1 68414.m06508 clathrin adaptor complexes medium subun...    29   4.5  
At1g18560.1 68414.m02315 hAT dimerisation domain-containing prot...    28   6.0  
At5g36090.1 68418.m04349 hypothetical protein contains Pfam prof...    28   7.9  
At1g42250.1 68414.m04869 replication protein-related weak simila...    28   7.9  
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l...    28   7.9  
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l...    28   7.9  

>At2g14800.1 68415.m01677 hypothetical protein
          Length = 580

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -1

Query: 771 KLKSTPLQVTSSFRSTNTLFN*PELFG 691
           K+KS  L+VTS  +  N+L++  E+FG
Sbjct: 213 KIKSAKLEVTSELKEANSLWDNREVFG 239


>At2g04810.1 68415.m00494 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 397

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +2

Query: 410 FMQHFFFSYIKCSVHGDYLHCLLVEFKKTIRVFNYKC 520
           FM+ + FSYIK    GDY  C L    K++ +F+  C
Sbjct: 192 FMRQYLFSYIK----GDYSWCNLNHNGKSLVLFDMAC 224


>At1g56590.1 68414.m06508 clathrin adaptor complexes medium subunit
           family protein contains Pfam profile: PF00928 adaptor
           complexes medium subunit family
          Length = 415

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = -2

Query: 683 SGNQAIITLLQKKNCGWTYWTIRKHSLGHIS--IALKM*TQRIRIT*SHVLGY 531
           S N   +T+L  K C WT   I K     +S  +AL+   +R+ +  +  LG+
Sbjct: 322 SSNHGTVTILSNKTCTWTIGRIPKDKTPCLSGTLALEPGLERLHVFPTFKLGF 374


>At1g18560.1 68414.m02315 hAT dimerisation domain-containing protein
           / BED zinc finger domain-containing protein /
           transposase-related weak similarity to Tam3-transposase
           [Antirrhinum majus] GI:16064; contains Pfam profiles
           PF02892: BED zinc finger, PF05699: hAT family
           dimerisation domain
          Length = 676

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = +3

Query: 447 VCMVITYIVF*LN--LKKRFVSLTINVESYV 533
           VC V TYI   L+  +K  ++  TIN+ESY+
Sbjct: 467 VCNVFTYITAILDPRIKTEYIPETINLESYI 497


>At5g36090.1 68418.m04349 hypothetical protein contains Pfam profile
           PF03778: Protein of unknown function (DUF321)
          Length = 141

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 702 ELFGLKVW*PSHYYTFAKKKLRLDILDNK 616
           ++ GL+ W  +H +TF  +KLR   L  K
Sbjct: 53  KITGLRFWRENHGFTFLARKLRFTFLTGK 81


>At1g42250.1 68414.m04869 replication protein-related weak
           similarity to Replication Protein A 70  kDa DNA-binding
           subunit (RP-A) (RF-A) (Replication factor-A protein 1)
           (Single-stranded DNA-binding protein) (DMRPA1)
           (GI:2498844)(SP:Q24492) [Drosophila melanogaster]
          Length = 114

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -1

Query: 582 QNVNPENSYHLISRIRLHTIQH 517
           ++V+P++ YH I  +  HTI+H
Sbjct: 2   EHVSPKSRYHFIECVDFHTIKH 23


>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
           SR protein (SRZ21) nearly identical to 9G8-like splicing
           factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
           protein [Arabidopsis thaliana] GI:2582643
          Length = 187

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/58 (32%), Positives = 26/58 (44%)
 Frame = +1

Query: 55  RDTSPAVTRSKRYTGADRRKTARAC*RPPKRPSSAKTRVQTKLTRPRCSQGSVKDTPK 228
           R  SP   RS  Y  A R  + R    PP+R S    R     +R    +GS +D+P+
Sbjct: 114 RSPSPRRRRSPDYGYARRSISPRGRRSPPRRRSVTPPRRGRSYSRSPPYRGSRRDSPR 171


>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
           SR protein (SRZ21) nearly identical to 9G8-like splicing
           factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
           protein [Arabidopsis thaliana] GI:2582643
          Length = 187

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/58 (32%), Positives = 26/58 (44%)
 Frame = +1

Query: 55  RDTSPAVTRSKRYTGADRRKTARAC*RPPKRPSSAKTRVQTKLTRPRCSQGSVKDTPK 228
           R  SP   RS  Y  A R  + R    PP+R S    R     +R    +GS +D+P+
Sbjct: 114 RSPSPRRRRSPDYGYARRSISPRGRRSPPRRRSVTPPRRGRSYSRSPPYRGSRRDSPR 171


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,174,562
Number of Sequences: 28952
Number of extensions: 326947
Number of successful extensions: 655
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)