Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0607
(805 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.) 114 7e-26
SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0) 66 2e-11
SB_29195| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.067
SB_17447| Best HMM Match : zf-B_box (HMM E-Value=0.04) 33 0.21
SB_786| Best HMM Match : EGF (HMM E-Value=0) 29 3.3
SB_2342| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_10791| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_5367| Best HMM Match : wnt (HMM E-Value=0) 29 4.4
SB_27442| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.8
SB_28048| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.8
SB_51126| Best HMM Match : MSG (HMM E-Value=6.4) 28 7.7
SB_43196| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
>SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1137
Score = 114 bits (275), Expect = 7e-26
Identities = 53/82 (64%), Positives = 56/82 (68%)
Frame = +1
Query: 517 KDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWDFLPPKKIKDPEAKKPEDWXXXX 696
KDD THLYTLIV+PDNTYEV IDNEKVESG+LE DWDFLPPK IKDPEAKKPEDW
Sbjct: 847 KDDEMTHLYTLIVRPDNTYEVKIDNEKVESGELEKDWDFLPPKTIKDPEAKKPEDWDDKK 906
Query: 697 XXXXXXXXXXXXXXXXXHIPDP 762
+IPDP
Sbjct: 907 MIDDPEDKKPEDWDKPQNIPDP 928
Score = 76.6 bits (180), Expect = 2e-14
Identities = 34/55 (61%), Positives = 39/55 (70%)
Frame = +3
Query: 90 VFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDARFY 254
V F EKF D SWE WV S G + GKFK TAGKF+ D E DKG++TSEDA+FY
Sbjct: 756 VHFLEKFEDKSWEDRWVSSTSKGAQQGKFKWTAGKFYGDAEADKGIQTSEDAKFY 810
Score = 62.1 bits (144), Expect = 5e-10
Identities = 27/36 (75%), Positives = 32/36 (88%), Gaps = 1/36 (2%)
Frame = +2
Query: 257 LSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLK 361
+S KF KPF+NEGK LV+QF+VKHEQ+IDCGGGY K
Sbjct: 812 ISAKFEKPFTNEGKTLVIQFSVKHEQNIDCGGGYAK 847
Score = 35.5 bits (78), Expect = 0.051
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +1
Query: 622 DWDFLPPKKIKDPEAKKPEDW 684
DWD P+ I DP+AKKPEDW
Sbjct: 918 DWD--KPQNIPDPDAKKPEDW 936
>SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0)
Length = 1086
Score = 66.5 bits (155), Expect = 2e-11
Identities = 30/57 (52%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Frame = +1
Query: 520 DDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADW--DFLPPKKIKDPEAKKPEDW 684
D THL+TL+V+PDNT+EV ID E V G L D PP +I+DP+ K+PEDW
Sbjct: 87 DGKKTHLFTLVVRPDNTFEVFIDQESVNKGSLLEDMTPPVNPPAEIEDPDDKRPEDW 143
Score = 46.0 bits (104), Expect = 4e-05
Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Frame = +2
Query: 371 CKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKG-KNHLIKKDSAAK 520
C L Q+ +TPY IMFGPD CG +K+H IF +K KN I++ A K
Sbjct: 28 CHLFQESFGDKTPYTIMFGPDKCGE-DRKLHFIFRHKNPKNGTIEEKHAKK 77
Score = 35.1 bits (77), Expect = 0.067
Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +1
Query: 586 DNEKVESGDLEA--DWDFLPPKKIKDPEAKKPEDW 684
+ EK+ D E DWD P KI D AKKPE W
Sbjct: 145 EREKIPDPDAEKPDDWDEDAPVKIPDTNAKKPEGW 179
>SB_29195| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 35.1 bits (77), Expect = 0.067
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -2
Query: 348 PPQSMSCSCLTVNWTTKGLPSLLNG 274
P + SC CL V W T GLP L++G
Sbjct: 429 PSEQNSCQCLFVGWQTVGLPQLIHG 453
>SB_17447| Best HMM Match : zf-B_box (HMM E-Value=0.04)
Length = 1223
Score = 33.5 bits (73), Expect = 0.21
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +2
Query: 566 TPMKSSLTMRKLNLAT*RPIGTSFRPRKS-RTLKPRNQKTGMTSPLFQT 709
TP+KSS++ + NL P+ S +P + TL P+ + +T PL +T
Sbjct: 960 TPLKSSVSAKNCNLPKQGPVTVSSKPAIALTTLAPQRTLSSLTGPLIKT 1008
>SB_786| Best HMM Match : EGF (HMM E-Value=0)
Length = 1427
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +2
Query: 617 RPIGTSFRPRKSRTLKPRNQKTGMTSPLFQTPKTRSLRI 733
RP G F PR T PR + T T+P+F TP +R ++I
Sbjct: 1365 RPAGYYF-PRPQVTQLPRTRGTRPTTPVF-TPSSRRIKI 1401
>SB_2342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 430
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +3
Query: 231 TSEDARFYLSPVSSNRSVMRVNPWSSSSLSNMNKTLTVEADTS 359
T+ DAR P +S R++P SSSS S+ + + + + DT+
Sbjct: 191 TAADAREMADPATSTPWTFRMSPASSSSSSSSSSSSSSQEDTT 233
>SB_10791| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 510
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 586 DNEKVESGDLEADWDFLPPKKIKDPEAKKPE 678
D++ + GD E + FLPP + E+K PE
Sbjct: 106 DSDNGDKGDSEDEESFLPPSIFDESESKGPE 136
>SB_5367| Best HMM Match : wnt (HMM E-Value=0)
Length = 367
Score = 29.1 bits (62), Expect = 4.4
Identities = 9/33 (27%), Positives = 17/33 (51%)
Frame = -1
Query: 610 RQIQLSHCQ*GLHRCCRVSQSECTNVCRHHLCS 512
+++Q + C+ H CC+V C H+C+
Sbjct: 335 KEVQATRCRCKFHWCCKVKCKTCIKNVTTHICN 367
>SB_27442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 165
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = +1
Query: 592 EKVESGDLEADWD-FLPPKKIKDPEAKKPEDW 684
EKV +G++ ++D LPP++ K PE+ PE +
Sbjct: 48 EKVWTGEVWREFDPLLPPRRQKGPESLDPETY 79
>SB_28048| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 125
Score = 28.7 bits (61), Expect = 5.8
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = -3
Query: 152 VLTVHPIAFPRIIRKLLLKEYI 87
+LT H + P++IRK+ LK+Y+
Sbjct: 73 LLTAHLVVAPKLIRKMPLKDYV 94
>SB_51126| Best HMM Match : MSG (HMM E-Value=6.4)
Length = 194
Score = 28.3 bits (60), Expect = 7.7
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = -1
Query: 346 STVNVLFMFDSELDDQ---GFTLITERFELTGER*NLASSEV 230
ST +VL FD E DD+ FTL +R + G R +A S+V
Sbjct: 81 STAHVLPTFDKEKDDRIIVKFTLRDDRNKFYGNRKEIAGSKV 122
>SB_43196| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 180
Score = 28.3 bits (60), Expect = 7.7
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Frame = +2
Query: 338 DCGG-GYLKVFDCKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKGKNHLIKKDSA 514
D GG G L++ D + +K H + GP G K H Y G+ L +D
Sbjct: 54 DYGGKGELELLDYGVREKPTHPDYGGRGKLGPPDYGAKEKPTHP--GYGGRGKLGPRDYG 111
Query: 515 AKMMSTH 535
AK TH
Sbjct: 112 AKEKPTH 118
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,581,980
Number of Sequences: 59808
Number of extensions: 638114
Number of successful extensions: 1736
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1721
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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