BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0606 (756 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 43 3e-04 At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 43 3e-04 At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 43 3e-04 At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 42 3e-04 At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 41 8e-04 At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 41 0.001 At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 40 0.002 At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 40 0.002 At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 40 0.002 At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 40 0.002 At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 39 0.003 At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 39 0.003 At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 39 0.003 At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 39 0.003 At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 39 0.003 At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 39 0.004 At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 38 0.005 At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 38 0.007 At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 38 0.010 At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 38 0.010 At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 38 0.010 At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 38 0.010 At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 37 0.013 At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 37 0.017 At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 35 0.051 At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 35 0.051 At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 35 0.067 At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 34 0.089 At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 34 0.089 At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 33 0.15 At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 33 0.15 At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 33 0.20 At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 33 0.20 At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 33 0.20 At2g47310.1 68415.m05906 flowering time control protein-related ... 32 0.36 At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 32 0.47 At5g37720.1 68418.m04541 RNA and export factor-binding protein, ... 31 0.62 At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 31 0.62 At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 31 0.62 At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 31 0.62 At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 31 0.62 At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 31 0.62 At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 31 0.62 At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 31 0.62 At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 31 0.62 At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 31 0.62 At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 31 0.62 At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 31 0.83 At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 31 0.83 At1g66260.1 68414.m07522 RNA and export factor-binding protein, ... 31 0.83 At1g30420.1 68414.m03718 ATP-binding cassette transport protein,... 31 0.83 At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 31 1.1 At4g10060.1 68417.m01645 expressed protein contains Pfam domain ... 31 1.1 At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 31 1.1 At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 31 1.1 At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 31 1.1 At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 31 1.1 At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 31 1.1 At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 31 1.1 At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 31 1.1 At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 31 1.1 At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 30 1.4 At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 30 1.4 At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 30 1.4 At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 30 1.4 At3g26400.1 68416.m03292 eukaryotic translation initiation facto... 30 1.4 At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 30 1.9 At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 30 1.9 At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 30 1.9 At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 30 1.9 At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 30 1.9 At1g24570.1 68414.m03091 expressed protein contains Pfam profile... 30 1.9 At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 30 1.9 At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 30 1.9 At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 30 1.9 At5g16840.1 68418.m01973 RNA recognition motif (RRM)-containing ... 29 2.5 At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 29 2.5 At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 29 2.5 At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 29 2.5 At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 29 2.5 At1g44446.3 68414.m05115 chlorophyll a oxygenase (CAO) / chlorop... 29 2.5 At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) / chlorop... 29 2.5 At1g44446.1 68414.m05113 chlorophyll a oxygenase (CAO) / chlorop... 29 2.5 At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 29 3.3 At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 29 3.3 At3g50670.2 68416.m05543 U1 small nuclear ribonucleoprotein 70 (... 29 3.3 At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 29 3.3 At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 29 3.3 At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 29 3.3 At5g51450.1 68418.m06378 zinc finger (C3HC4-type RING finger) fa... 29 4.4 At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 29 4.4 At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 29 4.4 At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 29 4.4 At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 28 5.8 At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 28 5.8 At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 28 5.8 At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 28 5.8 At5g62400.1 68418.m07831 hypothetical protein 28 7.7 At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 28 7.7 At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 28 7.7 >At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (U1-70k) Length = 427 Score = 42.7 bits (96), Expect = 3e-04 Identities = 19/51 (37%), Positives = 33/51 (64%), Gaps = 1/51 (1%) Frame = +3 Query: 537 KKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNS-RGFAVIEYDH 686 K +FV+ L+Y++ ++KIK F+ G ++ + L D+ N +G+A IEY H Sbjct: 138 KTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMH 188 >At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative similar to SP|P19684 33 kDa ribonucleoprotein, chloroplast precursor {Nicotiana sylvestris}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 308 Score = 42.7 bits (96), Expect = 3e-04 Identities = 19/48 (39%), Positives = 28/48 (58%) Frame = +3 Query: 531 LVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVI 674 L +K+FV NL + I E+F G V N+++ KDG +RGFA + Sbjct: 93 LKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFV 140 Score = 29.5 bits (63), Expect = 2.5 Identities = 14/40 (35%), Positives = 23/40 (57%) Frame = +2 Query: 134 RRLFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGK 253 R+LFV N+P+ ++ +LF + G V VE++ GK Sbjct: 95 RKLFVFNLPWSMSVNDISELFGQ-CGTVNNVEIIRQKDGK 133 >At1g49760.1 68414.m05580 polyadenylate-binding protein, putative / PABP, putative similar to poly(A)-binding protein GB:AAF66825 GI:7673359 from [Nicotiana tabacum] Length = 671 Score = 42.7 bits (96), Expect = 3e-04 Identities = 17/50 (34%), Positives = 27/50 (54%) Frame = +3 Query: 534 VKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYD 683 V +F+ NLD D + E F G + + +AVD G S+G+ ++YD Sbjct: 132 VGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYD 181 Score = 29.5 bits (63), Expect = 2.5 Identities = 14/49 (28%), Positives = 23/49 (46%) Frame = +3 Query: 543 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHP 689 ++V NLD K++E F G + + + D G SRG + + P Sbjct: 329 LYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTP 377 >At5g65260.1 68418.m08209 polyadenylate-binding protein family protein / PABP family protein low similarity to poly(A)-binding protein II [Drosophila melanogaster] GI:6007612; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) domain Length = 220 Score = 42.3 bits (95), Expect = 3e-04 Identities = 16/48 (33%), Positives = 28/48 (58%) Frame = +3 Query: 537 KKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEY 680 + VFV N+DY ++++ F+ G V + + DK G +GFA +E+ Sbjct: 92 RSVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEF 139 >At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) Length = 660 Score = 41.1 bits (92), Expect = 8e-04 Identities = 18/54 (33%), Positives = 30/54 (55%) Frame = +3 Query: 543 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPLKPYR 704 +++ NLD D K+KE+F G V + + ++ G SRGF + Y +P + R Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALR 387 Score = 35.9 bits (79), Expect = 0.029 Identities = 13/47 (27%), Positives = 26/47 (55%) Frame = +3 Query: 543 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYD 683 +F+ NLD D + E F G + + +A+D G S+G+ ++++ Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFE 184 Score = 34.3 bits (75), Expect = 0.089 Identities = 15/54 (27%), Positives = 30/54 (55%) Frame = +3 Query: 543 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPLKPYR 704 ++ +LD K +A + ++FK V ++ + D++ S G+A I + +P YR Sbjct: 51 LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYR 104 >At5g51120.1 68418.m06339 polyadenylate-binding protein, putative / PABP, putative contains similarity to poly(A)-binding protein II [Mus musculus] GI:2351846; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 227 Score = 40.7 bits (91), Expect = 0.001 Identities = 14/48 (29%), Positives = 28/48 (58%) Frame = +3 Query: 537 KKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEY 680 + ++V N+DY ++++ F+ G V + + DK G +GFA +E+ Sbjct: 103 RSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEF 150 >At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar to RNA-binding protein GB:S46286 from [Nicotiana sylvestris] Length = 289 Score = 39.9 bits (89), Expect = 0.002 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Frame = +3 Query: 540 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKD-GNSRGFAVIEY 680 K+FV + Y D+ ++E F G+V + + VD++ G SRGFA + + Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTF 82 >At5g10350.2 68418.m01201 polyadenylate-binding protein family protein / PABP family protein contains weak similarity to poly(A) binding protein II from [Mus musculus] GI:2351846, [Xenopus laevis] GI:11527140; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 202 Score = 39.5 bits (88), Expect = 0.002 Identities = 15/48 (31%), Positives = 28/48 (58%) Frame = +3 Query: 537 KKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEY 680 + V+V N+DY +++ F+ G V + + +DK G +GFA +E+ Sbjct: 89 RSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEF 136 >At5g10350.1 68418.m01200 polyadenylate-binding protein family protein / PABP family protein contains weak similarity to poly(A) binding protein II from [Mus musculus] GI:2351846, [Xenopus laevis] GI:11527140; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 217 Score = 39.5 bits (88), Expect = 0.002 Identities = 15/48 (31%), Positives = 28/48 (58%) Frame = +3 Query: 537 KKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEY 680 + V+V N+DY +++ F+ G V + + +DK G +GFA +E+ Sbjct: 89 RSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEF 136 >At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile: PF00076 RNA recognition motif Length = 636 Score = 39.5 bits (88), Expect = 0.002 Identities = 18/51 (35%), Positives = 31/51 (60%) Frame = +3 Query: 537 KKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHP 689 K +F NL Y+ ++ I+ FK AG+V ++ L+ DG+ +G+ IE+ P Sbjct: 384 KTLFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDDGSFKGYGHIEFASP 434 >At5g59950.3 68418.m07518 RNA and export factor-binding protein, putative Length = 242 Score = 39.1 bits (87), Expect = 0.003 Identities = 16/47 (34%), Positives = 28/47 (59%) Frame = +3 Query: 540 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEY 680 K++++NLDY IKE+F G+++ + D+ G S+G A + Y Sbjct: 87 KLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVY 133 >At5g59950.2 68418.m07519 RNA and export factor-binding protein, putative Length = 178 Score = 39.1 bits (87), Expect = 0.003 Identities = 16/47 (34%), Positives = 28/47 (59%) Frame = +3 Query: 540 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEY 680 K++++NLDY IKE+F G+++ + D+ G S+G A + Y Sbjct: 23 KLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVY 69 >At5g59950.1 68418.m07517 RNA and export factor-binding protein, putative Length = 244 Score = 39.1 bits (87), Expect = 0.003 Identities = 16/47 (34%), Positives = 28/47 (59%) Frame = +3 Query: 540 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEY 680 K++++NLDY IKE+F G+++ + D+ G S+G A + Y Sbjct: 89 KLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVY 135 >At2g23350.1 68415.m02788 polyadenylate-binding protein, putative / PABP, putative Length = 662 Score = 39.1 bits (87), Expect = 0.003 Identities = 17/50 (34%), Positives = 26/50 (52%) Frame = +3 Query: 534 VKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYD 683 V +FV NLD D + E F G + + +A D G SRG+ +++D Sbjct: 133 VGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFD 182 Score = 28.7 bits (61), Expect = 4.4 Identities = 12/46 (26%), Positives = 23/46 (50%) Frame = +3 Query: 543 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEY 680 ++V NLD K++E+F G + + + D G S+G + + Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAF 375 >At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5) identical to GB:Q05196 from [Arabidopsis thaliana] Length = 668 Score = 39.1 bits (87), Expect = 0.003 Identities = 16/49 (32%), Positives = 28/49 (57%) Frame = +3 Query: 543 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHP 689 +++ NLD + K+KE+F G V + + ++ G SRGF + Y +P Sbjct: 330 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNP 378 Score = 35.9 bits (79), Expect = 0.029 Identities = 14/47 (29%), Positives = 26/47 (55%) Frame = +3 Query: 543 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYD 683 VF+ NLD D + E F G + + +A+D G S+G+ ++++ Sbjct: 134 VFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFE 180 Score = 29.1 bits (62), Expect = 3.3 Identities = 17/52 (32%), Positives = 25/52 (48%) Frame = +2 Query: 95 NRDRSSDXHRTESRRLFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSG 250 +R RS ++V N+P E ELK F K GD++ ++ D SG Sbjct: 212 DRARSESGAVPSFTNVYVKNLPKEITDDELKKTF-GKYGDISSAVVMKDQSG 262 >At5g02530.1 68418.m00187 RNA and export factor-binding protein, putative BcDNA.LD24793, Drosophila melanogaster, EMBL:AF172637 Length = 292 Score = 38.7 bits (86), Expect = 0.004 Identities = 15/47 (31%), Positives = 27/47 (57%) Frame = +3 Query: 540 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEY 680 K++++NLDY IKE+F G ++ + D+ G S+G A + + Sbjct: 109 KLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVF 155 Score = 28.7 bits (61), Expect = 4.4 Identities = 14/41 (34%), Positives = 25/41 (60%) Frame = +2 Query: 137 RLFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKEE 259 +L++SN+ Y ++K+LF E VGD+ + D SG+ + Sbjct: 109 KLYISNLDYGVSNEDIKELFSE-VGDLKRYGIHYDRSGRSK 148 >At1g34140.1 68414.m04235 polyadenylate-binding protein, putative / PABP, putative non-consensus splice donor TA at exon 1; similar to polyadenylate-binding protein (poly(A)-binding protein) from [Triticum aestivum] GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis thaliana} SP|P42731; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 407 Score = 38.3 bits (85), Expect = 0.005 Identities = 18/53 (33%), Positives = 29/53 (54%) Frame = +3 Query: 543 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPLKPY 701 VFV NLD D ++ ++F GKV + +A D G S+G+ +++ L Y Sbjct: 33 VFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVY 85 Score = 34.7 bits (76), Expect = 0.067 Identities = 14/46 (30%), Positives = 26/46 (56%) Frame = +3 Query: 543 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEY 680 ++V NLD D K++E+F G + + + V +G S+G +E+ Sbjct: 225 LYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEF 270 >At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 783 Score = 37.9 bits (84), Expect = 0.007 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Frame = +3 Query: 540 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKD-GNSRGFAVIEY 680 ++FV NL Y A + ++ E F GK+ + L +DK+ SRG A I Y Sbjct: 262 RLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILY 309 >At5g41690.1 68418.m05067 polyadenylate-binding protein, putative / PABP, putative similar to poly(A)-binding protein GI:7673355 from [Nicotiana tabacum]; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 620 Score = 37.5 bits (83), Expect = 0.010 Identities = 18/40 (45%), Positives = 27/40 (67%) Frame = +2 Query: 134 RRLFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGK 253 + LFV+N+PYE + + D FK KVG+V V+L+ + GK Sbjct: 127 KTLFVANLPYETKIPNIIDFFK-KVGEVVRVQLIVNLKGK 165 Score = 28.7 bits (61), Expect = 4.4 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = +1 Query: 259 GCGIVEFTNTEAMKKALFVMHRYELNGRKLVL 354 GCG VEF + +KAL M+ L R++ L Sbjct: 530 GCGFVEFASVNEAQKALQKMNGENLRSREIFL 561 >At5g03580.1 68418.m00316 polyadenylate-binding protein, putative / PABP, putative similar to poly(A)-binding protein [Triticum aestivum] GI:1737492; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 101 Score = 37.5 bits (83), Expect = 0.010 Identities = 20/53 (37%), Positives = 29/53 (54%) Frame = +3 Query: 525 PPLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYD 683 P +++ANLD + + + +F GKV LA D G SRGFA IE++ Sbjct: 13 PRKFTSLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGFAFIEFE 65 >At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative similar to SP|Q43349 29 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein cp29) {Arabidopsis thaliana} Length = 289 Score = 37.5 bits (83), Expect = 0.010 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Frame = +3 Query: 540 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKD-GNSRGFAVIEYD 683 +V+V NL + D ++ +F GKV + D+D G S+GF + YD Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYD 253 Score = 29.1 bits (62), Expect = 3.3 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = +2 Query: 137 RLFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD 241 +LFV N+P+ +L LF E G+V VE++ D Sbjct: 92 KLFVGNLPFNVDSAQLAQLF-ESAGNVEMVEVIYD 125 >At2g36660.1 68415.m04496 polyadenylate-binding protein, putative / PABP, putative Length = 609 Score = 37.5 bits (83), Expect = 0.010 Identities = 16/50 (32%), Positives = 29/50 (58%) Frame = +3 Query: 534 VKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYD 683 V VFV NL A ++++FK G + + +A +DG SRG+ ++++ Sbjct: 111 VGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFE 160 Score = 35.5 bits (78), Expect = 0.038 Identities = 14/49 (28%), Positives = 30/49 (61%) Frame = +3 Query: 543 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHP 689 +++ NLD + ++E F GK+ ++ +A D++ RG+A + +D+P Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNP 251 Score = 29.9 bits (64), Expect = 1.9 Identities = 16/50 (32%), Positives = 26/50 (52%) Frame = +2 Query: 104 RSSDXHRTESRRLFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGK 253 R+ D R +FV N+P L+D+FK K G++ ++ T + GK Sbjct: 102 RAPDARRNGVGNVFVKNLPESVTNAVLQDMFK-KFGNIVSCKVATLEDGK 150 >At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative similar to glycine-rich RNA-binding protein from {Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum sativum]; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 155 Score = 37.1 bits (82), Expect = 0.013 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Frame = +3 Query: 507 GSINVQPPLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKD-GNSRGFAVIEYD 683 G++++ P K+FV L D +KE F GK+ + + +D++ G SRGF + YD Sbjct: 29 GNLSLTP---SKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYD 85 >At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative similar to SP|Q04836 31 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis thaliana}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 289 Score = 36.7 bits (81), Expect = 0.017 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Frame = +3 Query: 522 QPPLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKD-GNSRGFAVI 674 +PP K+FV NL Y D + +F+ AG V ++ ++D SRGF + Sbjct: 108 EPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFV 159 Score = 29.1 bits (62), Expect = 3.3 Identities = 17/51 (33%), Positives = 26/51 (50%) Frame = +1 Query: 256 RGCGIVEFTNTEAMKKALFVMHRYELNGRKLVLKEETGNERRMHTSRPQHR 408 RG G V + E +KA+ + +E+NGR+L T N SRP+ + Sbjct: 154 RGFGFVTMSTVEEAEKAVEKFNSFEVNGRRL-----TVNRAAPRGSRPERQ 199 >At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2) glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis thaliana] GI:2826811 Length = 153 Score = 35.1 bits (77), Expect = 0.051 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Frame = +3 Query: 540 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKD-GNSRGFAVIEYD 683 K+F+ L + D A +++ F G V + + VD++ G SRGF + ++ Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFN 84 Score = 30.7 bits (66), Expect = 1.1 Identities = 17/40 (42%), Positives = 21/40 (52%) Frame = +1 Query: 229 IVDR*QWKRRGCGIVEFTNTEAMKKALFVMHRYELNGRKL 348 IVDR + RG G V F + A A+ M ELNGR + Sbjct: 67 IVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHI 106 >At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2) glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis thaliana] GI:2826811 Length = 158 Score = 35.1 bits (77), Expect = 0.051 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Frame = +3 Query: 540 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKD-GNSRGFAVIEYD 683 K+F+ L + D A +++ F G V + + VD++ G SRGF + ++ Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFN 84 Score = 30.7 bits (66), Expect = 1.1 Identities = 17/40 (42%), Positives = 21/40 (52%) Frame = +1 Query: 229 IVDR*QWKRRGCGIVEFTNTEAMKKALFVMHRYELNGRKL 348 IVDR + RG G V F + A A+ M ELNGR + Sbjct: 67 IVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHI 106 >At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA splicing factor SF3b 49 kDa subunit) {Homo sapiens}; contains Pfam profile PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 363 Score = 34.7 bits (76), Expect = 0.067 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 2/49 (4%) Frame = +3 Query: 543 VFVANLDYKADQAKIKEVFKMAGKVR-NIDLAVDKD-GNSRGFAVIEYD 683 +F+ NLD D+ + + F G + N + D D GNSRGF I YD Sbjct: 114 LFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYD 162 >At4g16280.3 68417.m02471 flowering time control protein / FCA gamma (FCA) identical to SP|O04425 Flowering time control protein FCA {Arabidopsis thaliana}; four alternative splice variants, one splicing isoform contains a non-consensus CA donor splice site, based on cDNA: gi:2204090 Length = 533 Score = 34.3 bits (75), Expect = 0.089 Identities = 15/47 (31%), Positives = 29/47 (61%) Frame = +3 Query: 540 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEY 680 K+FV +L+ +A + +++E+F G V ++ L D+ SRG ++Y Sbjct: 212 KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKY 258 >At4g16280.2 68417.m02470 flowering time control protein / FCA gamma (FCA) identical to SP|O04425 Flowering time control protein FCA {Arabidopsis thaliana}; four alternative splice variants, one splicing isoform contains a non-consensus CA donor splice site, based on cDNA: gi:2204090 Length = 747 Score = 34.3 bits (75), Expect = 0.089 Identities = 15/47 (31%), Positives = 29/47 (61%) Frame = +3 Query: 540 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEY 680 K+FV +L+ +A + +++E+F G V ++ L D+ SRG ++Y Sbjct: 212 KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKY 258 >At5g61030.1 68418.m07659 RNA-binding protein, putative similar to RNA-binding protein from [Solanum tuberosum] GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 309 Score = 33.5 bits (73), Expect = 0.15 Identities = 19/50 (38%), Positives = 29/50 (58%) Frame = +1 Query: 229 IVDR*QWKRRGCGIVEFTNTEAMKKALFVMHRYELNGRKLVLKEETGNER 378 I+DR + RG G V FT++EA A+ + +L+GR V+K N+R Sbjct: 72 ILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGR--VVKVNYANDR 119 >At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing protein contains Pfam profile: PF00076 RNA recognition motif Length = 374 Score = 33.5 bits (73), Expect = 0.15 Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 2/54 (3%) Frame = +3 Query: 525 PPL-VKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEY 680 PP+ KK+F+ L + + ++ F+ G++ + + +DK S+G+A +EY Sbjct: 277 PPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEY 330 >At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2) non-consensus TA donor splice site at exon 2, polyadenylate-binding protein - Triticum aestivum (common wheat),PIR:T06979 Length = 443 Score = 33.1 bits (72), Expect = 0.20 Identities = 15/49 (30%), Positives = 25/49 (51%) Frame = +3 Query: 543 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHP 689 ++V NLD K+KE+F G V + + D +G S+G + + P Sbjct: 134 LYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATP 182 Score = 30.3 bits (65), Expect = 1.4 Identities = 13/48 (27%), Positives = 24/48 (50%) Frame = +3 Query: 543 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDH 686 V+V NL +K F GK+ + + D +G S+GF + +++ Sbjct: 31 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFEN 78 >At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7) SP|Q03250 Glycine-rich RNA-binding protein 7 {Arabidopsis thaliana} Length = 159 Score = 33.1 bits (72), Expect = 0.20 Identities = 17/44 (38%), Positives = 26/44 (59%) Frame = +1 Query: 229 IVDR*QWKRRGCGIVEFTNTEAMKKALFVMHRYELNGRKLVLKE 360 I DR + RG G V F + +AMK A+ M+ +L+GR + + E Sbjct: 40 INDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNE 83 >At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7) SP|Q03250 Glycine-rich RNA-binding protein 7 {Arabidopsis thaliana} Length = 176 Score = 33.1 bits (72), Expect = 0.20 Identities = 17/44 (38%), Positives = 26/44 (59%) Frame = +1 Query: 229 IVDR*QWKRRGCGIVEFTNTEAMKKALFVMHRYELNGRKLVLKE 360 I DR + RG G V F + +AMK A+ M+ +L+GR + + E Sbjct: 40 INDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNE 83 >At2g47310.1 68415.m05906 flowering time control protein-related / FCA gamma-related Length = 512 Score = 32.3 bits (70), Expect = 0.36 Identities = 17/58 (29%), Positives = 32/58 (55%) Frame = +3 Query: 507 GSINVQPPLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEY 680 G VQ P K++V L+ + + ++ EVF G + +I +A+D RG+A +++ Sbjct: 197 GFAPVQLPDNPKLYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDDMKICRGYAFVQF 254 >At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a) almost identical to SC35-like splicing factor SCL30a GI:9843661 from [Arabidopsis thaliana]; contains Pfam profile PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 262 Score = 31.9 bits (69), Expect = 0.47 Identities = 18/57 (31%), Positives = 28/57 (49%) Frame = +1 Query: 256 RGCGIVEFTNTEAMKKALFVMHRYELNGRKLVLKEETGNERRMHTSRPQHREGRNNR 426 RG G ++F + +A M Y L GR+L + N ++ R + R GR+NR Sbjct: 78 RGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFAEENRKKPTEMRTRDRGGRSNR 134 >At5g37720.1 68418.m04541 RNA and export factor-binding protein, putative transcriptional coactivator ALY, Mus musculus, EMBL:MMU89876 Length = 288 Score = 31.5 bits (68), Expect = 0.62 Identities = 15/47 (31%), Positives = 23/47 (48%) Frame = +3 Query: 540 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEY 680 ++ V NLD I+E+F G+V + DK+G G A + Y Sbjct: 94 RLHVTNLDQGVTNEDIRELFSEIGEVERYAIHYDKNGRPSGTAEVVY 140 >At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) identical to UBP1 interacting protein 2a [Arabidopsis thaliana] GI:19682816; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 478 Score = 31.5 bits (68), Expect = 0.62 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Frame = +3 Query: 537 KKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEY 680 KK++V+N+ + D K+ F G++ L +DK G +GF + Y Sbjct: 245 KKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVY 293 >At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) identical to UBP1 interacting protein 2a [Arabidopsis thaliana] GI:19682816; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 478 Score = 31.5 bits (68), Expect = 0.62 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Frame = +3 Query: 537 KKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEY 680 KK++V+N+ + D K+ F G++ L +DK G +GF + Y Sbjct: 245 KKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVY 293 >At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) identical to UBP1 interacting protein 2a [Arabidopsis thaliana] GI:19682816; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 478 Score = 31.5 bits (68), Expect = 0.62 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Frame = +3 Query: 537 KKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEY 680 KK++V+N+ + D K+ F G++ L +DK G +GF + Y Sbjct: 245 KKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVY 293 >At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast / RNA-binding protein cp 29 nearly identical to SP|Q43349 29 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein cp29) {Arabidopsis thaliana} Length = 334 Score = 31.5 bits (68), Expect = 0.62 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Frame = +3 Query: 540 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKD-GNSRGFAVI 674 +++V NL + D ++ +F GKV + D+D G S+GF + Sbjct: 250 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFV 295 >At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast / RNA-binding protein cp 29 nearly identical to SP|Q43349 29 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein cp29) {Arabidopsis thaliana} Length = 342 Score = 31.5 bits (68), Expect = 0.62 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Frame = +3 Query: 540 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKD-GNSRGFAVI 674 +++V NL + D ++ +F GKV + D+D G S+GF + Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFV 303 >At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative similar to RNA binding protein(RZ-1) GI:1435061 from [Nicotiana sylvestris]; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 292 Score = 31.5 bits (68), Expect = 0.62 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%) Frame = +3 Query: 531 LVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKD-GNSRGFAVIEY 680 L ++FV L + + +++ F GK+ + V +D G RGF I + Sbjct: 10 LESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITF 60 >At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative similar to RNA binding protein(RZ-1) GI:1435061 from [Nicotiana sylvestris]; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 292 Score = 31.5 bits (68), Expect = 0.62 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%) Frame = +3 Query: 531 LVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKD-GNSRGFAVIEY 680 L ++FV L + + +++ F GK+ + V +D G RGF I + Sbjct: 10 LESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITF 60 >At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30) nearly identical to SF2/ASF-like splicing modulator Srp30 [Arabidopsis thaliana] GI:4775270 Length = 268 Score = 31.5 bits (68), Expect = 0.62 Identities = 15/43 (34%), Positives = 22/43 (51%) Frame = +2 Query: 122 RTESRRLFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSG 250 R R+ V+ +P W +LKD + K GDV + E+ D G Sbjct: 105 RRSDYRVLVTGLPPSASWQDLKDHMR-KAGDVCFSEVFPDRKG 146 >At1g03457.2 68414.m00327 RNA-binding protein, putative similar to Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding protein [Homo sapiens] GI:15341327; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 438 Score = 31.5 bits (68), Expect = 0.62 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Frame = +3 Query: 498 TIFGSINVQPPLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVI 674 +I S+ + P +F+ N+ + + ++ F+ GKV + + VDK G S+ F I Sbjct: 326 SIPSSLQTEGPAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFI 385 Query: 675 EYD 683 YD Sbjct: 386 SYD 388 >At1g03457.1 68414.m00326 RNA-binding protein, putative similar to Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding protein [Homo sapiens] GI:15341327; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 429 Score = 31.5 bits (68), Expect = 0.62 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Frame = +3 Query: 498 TIFGSINVQPPLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVI 674 +I S+ + P +F+ N+ + + ++ F+ GKV + + VDK G S+ F I Sbjct: 317 SIPSSLQTEGPAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFI 376 Query: 675 EYD 683 YD Sbjct: 377 SYD 379 >At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 451 Score = 31.1 bits (67), Expect = 0.83 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Frame = +3 Query: 543 VFVANLDYK-ADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEY 680 + V NL K + ++++VF G++ ++ L DG SR FA I + Sbjct: 4 IIVKNLPSKHVTEERLRDVFSRKGEIADVKLKRKSDGKSRQFAYIGF 50 >At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing protein similar to UBP1 interacting protein 1a [Arabidopsis thaliana] GI:19574236; contains Pfam profile: PF00076 RNA recognition motif (aka RRM, RBD, or RNP domain) Length = 382 Score = 31.1 bits (67), Expect = 0.83 Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 1/47 (2%) Frame = +3 Query: 537 KKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKD-GNSRGFAVI 674 + +FV L + +K F++ G++ + +DKD G ++GF + Sbjct: 163 RNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFV 209 >At1g66260.1 68414.m07522 RNA and export factor-binding protein, putative similar to GI:7159943 from [Mus musculus] (RNA 6 (4), 638-650 (2000)) Length = 295 Score = 31.1 bits (67), Expect = 0.83 Identities = 13/46 (28%), Positives = 24/46 (52%) Frame = +3 Query: 543 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEY 680 V++ NLD I+E++ G+++ + DK+G G A + Y Sbjct: 109 VYITNLDQGVTNEDIRELYAEIGELKRYAIHYDKNGRPSGSAEVVY 154 >At1g30420.1 68414.m03718 ATP-binding cassette transport protein, putative contains Pfam profiles PF00005: ABC transporter, PF00664: ABC transporter transmembrane region Length = 1488 Score = 31.1 bits (67), Expect = 0.83 Identities = 16/46 (34%), Positives = 26/46 (56%) Frame = +1 Query: 544 CLWQIWITKLTKPKLRRYLKWLVKYVTLIWLLIKTVIVEDLLSLSM 681 C ++IWIT L K + Y+ + Y ++W+L +VE +L L M Sbjct: 50 CFYRIWIT-LYNAKAQIYVLRKMYYHCVLWILACCCVVEPVLRLVM 94 >At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing protein contains INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA recognition motif) domain Length = 173 Score = 30.7 bits (66), Expect = 1.1 Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Frame = +3 Query: 543 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNS-RGFAVIEYD 683 V++ N+D + + ++ AG+V ++ + DK+ + +GFA EY+ Sbjct: 9 VYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYE 56 >At4g10060.1 68417.m01645 expressed protein contains Pfam domain PF04685: Protein of unknown function, DUF608 Length = 912 Score = 30.7 bits (66), Expect = 1.1 Identities = 20/67 (29%), Positives = 31/67 (46%) Frame = +1 Query: 244 QWKRRGCGIVEFTNTEAMKKALFVMHRYELNGRKLVLKEETGNERRMHTSRPQHREGRNN 423 QW R CG+ T E +KKAL + YE N V+K + G ++ + + N+ Sbjct: 716 QWYARACGLKPITKEEWIKKALETI--YEFN----VMKVKGGTRGAVNGMSTEGKVDTNS 769 Query: 424 RDDKDNW 444 K+ W Sbjct: 770 LVSKEVW 776 >At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing protein similar to nucleolin protein; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 495 Score = 30.7 bits (66), Expect = 1.1 Identities = 13/53 (24%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Frame = +3 Query: 525 PPLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKD-GNSRGFAVIEY 680 PP +VF+ L + ++++ + G++ + L D+D G+S+G+A + + Sbjct: 112 PPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAF 164 >At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing protein low similarity to splicing factor SC35 [Arabidopsis thaliana] GI:9843653; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 261 Score = 30.7 bits (66), Expect = 1.1 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Frame = +3 Query: 528 PLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEY 680 P ++V+NLD+ + I +F GKV + + D+ SRG A + Y Sbjct: 54 PSKSTLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLY 105 >At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 495 Score = 30.7 bits (66), Expect = 1.1 Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Frame = +3 Query: 540 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEYDHP 689 K+F+ + + ++ ++KE F G+V + D+ G +RGF + + P Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADP 57 >At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 494 Score = 30.7 bits (66), Expect = 1.1 Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Frame = +3 Query: 540 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEYDHP 689 K+F+ + + ++ ++KE F G+V + D+ G +RGF + + P Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADP 57 >At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing protein Length = 116 Score = 30.7 bits (66), Expect = 1.1 Identities = 15/62 (24%), Positives = 32/62 (51%) Frame = +1 Query: 229 IVDR*QWKRRGCGIVEFTNTEAMKKALFVMHRYELNGRKLVLKEETGNERRMHTSRPQHR 408 I+D+ + + +G V F++ E +KAL ++ ++GR ++L + ++P H Sbjct: 53 IMDKIRCRPKGFAYVTFSSKEEAEKALLELNAQLVDGRVVILDTTKAAKHNPPDTKPNHA 112 Query: 409 EG 414 G Sbjct: 113 GG 114 >At1g71800.1 68414.m08298 cleavage stimulation factor, putative similar to cleavage stimulation factor 64 kilodalton subunit GB:AAD47839 GI:5713194 from [Drosophila melanogaster], SP|P33240 Cleavage stimulation factor, 64 kDa subunit {Homo sapiens}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 461 Score = 30.7 bits (66), Expect = 1.1 Identities = 18/62 (29%), Positives = 31/62 (50%) Frame = +1 Query: 229 IVDR*QWKRRGCGIVEFTNTEAMKKALFVMHRYELNGRKLVLKEETGNERRMHTSRPQHR 408 + DR K +G G E+ + E A + YE+NGR+L + + N++ +R Q + Sbjct: 41 VTDRETGKPKGYGFCEYKDEETALSARRNLQSYEINGRQLRV-DFAENDKGTDKTRDQSQ 99 Query: 409 EG 414 G Sbjct: 100 GG 101 Score = 30.3 bits (65), Expect = 1.4 Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 1/44 (2%) Frame = +2 Query: 125 TESRRLFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGK 253 ++ R +FV NIPY+ +L+++ E VG V L+TD ++GK Sbjct: 6 SQRRCVFVGNIPYDATEEQLREICGE-VGPVVSFRLVTDRETGK 48 >At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like SR protein (SRZ21) nearly identical to 9G8-like splicing factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21 protein [Arabidopsis thaliana] GI:2582643 Length = 187 Score = 30.7 bits (66), Expect = 1.1 Identities = 15/48 (31%), Positives = 29/48 (60%) Frame = +3 Query: 540 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYD 683 +V+V NLD + + ++++ FK G +RN+ +A G+A +E+D Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVA----RRPPGYAFLEFD 46 >At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like SR protein (SRZ21) nearly identical to 9G8-like splicing factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21 protein [Arabidopsis thaliana] GI:2582643 Length = 187 Score = 30.7 bits (66), Expect = 1.1 Identities = 15/48 (31%), Positives = 29/48 (60%) Frame = +3 Query: 540 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYD 683 +V+V NLD + + ++++ FK G +RN+ +A G+A +E+D Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVA----RRPPGYAFLEFD 46 >At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing protein Mei2-like protein - Arabidopsis thaliana, EMBL:D86122 Length = 907 Score = 30.3 bits (65), Expect = 1.4 Identities = 16/50 (32%), Positives = 27/50 (54%) Frame = +3 Query: 531 LVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEY 680 L + +FV N+D + ++ +FK G VR + A G +RGF ++ Y Sbjct: 209 LSRILFVRNVDSSIEDCELGVLFKQFGDVRALHTA----GKNRGFIMVSY 254 >At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1 protein, putative strong similarity to SP|O22315 Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis thaliana}; cDNA NCBI_gi:15810292 supports a truncated version while protein evidence supports a longer model. Length = 278 Score = 30.3 bits (65), Expect = 1.4 Identities = 14/34 (41%), Positives = 22/34 (64%) Frame = +2 Query: 131 SRRLFVSNIPYEFRWTELKDLFKEKVGDVAYVEL 232 SR ++V N+P + R E++DLF K G V ++L Sbjct: 6 SRTIYVGNLPGDIREREVEDLF-SKYGPVVQIDL 38 Score = 29.1 bits (62), Expect = 3.3 Identities = 15/49 (30%), Positives = 23/49 (46%) Frame = +2 Query: 104 RSSDXHRTESRRLFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSG 250 R R R+ VS +P W +LKD + K G+V + ++ D G Sbjct: 110 RERGPSRRSEYRVVVSGLPSSASWQDLKDHMR-KGGEVCFSQVFRDGRG 157 >At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1 protein, putative strong similarity to SP|O22315 Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis thaliana}; cDNA NCBI_gi:15810292 supports a truncated version while protein evidence supports a longer model. Length = 178 Score = 30.3 bits (65), Expect = 1.4 Identities = 14/34 (41%), Positives = 22/34 (64%) Frame = +2 Query: 131 SRRLFVSNIPYEFRWTELKDLFKEKVGDVAYVEL 232 SR ++V N+P + R E++DLF K G V ++L Sbjct: 6 SRTIYVGNLPGDIREREVEDLF-SKYGPVVQIDL 38 Score = 29.1 bits (62), Expect = 3.3 Identities = 15/49 (30%), Positives = 23/49 (46%) Frame = +2 Query: 104 RSSDXHRTESRRLFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSG 250 R R R+ VS +P W +LKD + K G+V + ++ D G Sbjct: 110 RERGPSRRSEYRVVVSGLPSSASWQDLKDHMR-KGGEVCFSQVFRDGRG 157 >At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative similar to chloroplast RNA-binding protein (cp33) GB:BAA06523 (Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539 (1995)); contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 329 Score = 30.3 bits (65), Expect = 1.4 Identities = 15/38 (39%), Positives = 22/38 (57%) Frame = +2 Query: 128 ESRRLFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD 241 E RL+V N+PY +EL +F E G V V+++ D Sbjct: 114 EEGRLYVGNLPYTITSSELSQIFGE-AGTVVDVQIVYD 150 >At3g26400.1 68416.m03292 eukaryotic translation initiation factor 4B, putative/ eIF-4B, putative similar to eukaryotic initiation factor 4B [Arabidopsis thaliana] GI:6739518 Length = 532 Score = 30.3 bits (65), Expect = 1.4 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = +1 Query: 412 GRNNRDDKDNWGINKPREPENLNTYGLS 495 G + DD DNWG K + P +T+G S Sbjct: 216 GLSRADDVDNWGAGKRQAPVRSSTFGSS 243 >At5g06210.1 68418.m00693 RNA-binding protein, putative contains similarity to RNA-binding protein from [Nicotiana tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925, [Solanum tuberosum] GI:15822705; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 146 Score = 29.9 bits (64), Expect = 1.9 Identities = 13/40 (32%), Positives = 23/40 (57%) Frame = +1 Query: 229 IVDR*QWKRRGCGIVEFTNTEAMKKALFVMHRYELNGRKL 348 ++DR + +G G V F + + +KAL + +LNGR + Sbjct: 66 VMDRVSDRSKGFGFVTFASADEAQKALMEFNGQQLNGRTI 105 >At3g16380.1 68416.m02074 polyadenylate-binding protein, putative / PABP, putative similar to polyadenylate-binding protein (poly(A)-binding protein) from {Arabidopsis thaliana} SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens} SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 537 Score = 29.9 bits (64), Expect = 1.9 Identities = 10/44 (22%), Positives = 26/44 (59%) Frame = +3 Query: 543 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVI 674 ++V NL ++ +++E+F G++ + + ++G S+GF + Sbjct: 306 LYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFV 349 >At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing protein similar to UBP1 interacting protein 1a [Arabidopsis thaliana] GI:19574236; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 451 Score = 29.9 bits (64), Expect = 1.9 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%) Frame = +3 Query: 537 KKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVI 674 +K+FV L + + + FK G++ + VDK G S+G+ I Sbjct: 128 RKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFI 174 >At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing protein similar to UBP1 interacting protein 1a [Arabidopsis thaliana] GI:19574236; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM); contains Pfam profile PF00096: Zinc finger, C2H2 type Length = 613 Score = 29.9 bits (64), Expect = 1.9 Identities = 11/49 (22%), Positives = 24/49 (48%), Gaps = 1/49 (2%) Frame = +3 Query: 537 KKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKD-GNSRGFAVIEY 680 + +FV + Q +K F+ G++ + +DKD G +G+ + + Sbjct: 408 RNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMF 456 >At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing protein low similarity to RRM-containing protein SEB-4 [Xenopus laevis] GI:8895698; contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 285 Score = 29.9 bits (64), Expect = 1.9 Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Frame = +3 Query: 540 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKD-GNSRGFAVIEYDHP 689 KVFV L ++ +++ F+ G++ + DK+ G S+G+ + + P Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDP 75 >At1g24570.1 68414.m03091 expressed protein contains Pfam profile PF05212: Protein of unknown function (DUF707) Length = 363 Score = 29.9 bits (64), Expect = 1.9 Identities = 16/54 (29%), Positives = 28/54 (51%) Frame = +1 Query: 307 LFVMHRYELNGRKLVLKEETGNERRMHTSRPQHREGRNNRDDKDNWGINKPREP 468 + ++ +++L + L ETG ++ T R +H E D+K +W N PR P Sbjct: 191 IHIVKKHDLEISQPGLDPETGFNWQI-TKRREHSEVHKETDEKLDWCSNPPRPP 243 >At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1 protein identical to SP|O22315 Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis thaliana} Length = 303 Score = 29.9 bits (64), Expect = 1.9 Identities = 14/34 (41%), Positives = 22/34 (64%) Frame = +2 Query: 131 SRRLFVSNIPYEFRWTELKDLFKEKVGDVAYVEL 232 SR ++V N+P + R E++DLF K G V ++L Sbjct: 6 SRTVYVGNLPGDIREREVEDLF-SKYGPVVQIDL 38 Score = 28.3 bits (60), Expect = 5.8 Identities = 14/43 (32%), Positives = 22/43 (51%) Frame = +2 Query: 122 RTESRRLFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSG 250 R R+ V+ +P W +LKD + K GDV + ++ D G Sbjct: 115 RRSEFRVLVTGLPSSASWQDLKDHMR-KGGDVCFSQVYRDARG 156 >At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1 protein identical to SP|O22315 Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis thaliana} Length = 285 Score = 29.9 bits (64), Expect = 1.9 Identities = 14/34 (41%), Positives = 22/34 (64%) Frame = +2 Query: 131 SRRLFVSNIPYEFRWTELKDLFKEKVGDVAYVEL 232 SR ++V N+P + R E++DLF K G V ++L Sbjct: 6 SRTVYVGNLPGDIREREVEDLF-SKYGPVVQIDL 38 Score = 28.3 bits (60), Expect = 5.8 Identities = 14/43 (32%), Positives = 22/43 (51%) Frame = +2 Query: 122 RTESRRLFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSG 250 R R+ V+ +P W +LKD + K GDV + ++ D G Sbjct: 115 RRSEFRVLVTGLPSSASWQDLKDHMR-KGGDVCFSQVYRDARG 156 >At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1 protein identical to SP|O22315 Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis thaliana} Length = 303 Score = 29.9 bits (64), Expect = 1.9 Identities = 14/34 (41%), Positives = 22/34 (64%) Frame = +2 Query: 131 SRRLFVSNIPYEFRWTELKDLFKEKVGDVAYVEL 232 SR ++V N+P + R E++DLF K G V ++L Sbjct: 6 SRTVYVGNLPGDIREREVEDLF-SKYGPVVQIDL 38 Score = 28.3 bits (60), Expect = 5.8 Identities = 14/43 (32%), Positives = 22/43 (51%) Frame = +2 Query: 122 RTESRRLFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSG 250 R R+ V+ +P W +LKD + K GDV + ++ D G Sbjct: 115 RRSEFRVLVTGLPSSASWQDLKDHMR-KGGDVCFSQVYRDARG 156 >At5g16840.1 68418.m01973 RNA recognition motif (RRM)-containing protein predicted proteins - Arabidopsis thaliana Length = 259 Score = 29.5 bits (63), Expect = 2.5 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = +3 Query: 534 VKKVFVANLDYKADQAKIKEVFKMAGKVRNIDL 632 V+ V V NL A + IKE F +G+V +ID+ Sbjct: 5 VRSVKVGNLSSGATEHDIKEFFSFSGEVESIDI 37 >At4g03110.2 68417.m00421 RNA-binding protein, putative similar to Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3 like factor 3 [Homo sapiens] GI:12746392; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 439 Score = 29.5 bits (63), Expect = 2.5 Identities = 12/51 (23%), Positives = 27/51 (52%) Frame = +3 Query: 531 LVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYD 683 L K+FV L +A+++ +F G ++++ + S+G A ++Y+ Sbjct: 104 LEHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYE 154 >At4g03110.1 68417.m00420 RNA-binding protein, putative similar to Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3 like factor 3 [Homo sapiens] GI:12746392; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 441 Score = 29.5 bits (63), Expect = 2.5 Identities = 12/51 (23%), Positives = 27/51 (52%) Frame = +3 Query: 531 LVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYD 683 L K+FV L +A+++ +F G ++++ + S+G A ++Y+ Sbjct: 104 LEHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYE 154 >At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative similar to Glycine-rich RNA-binding protein 2, mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8) [Arabidopsis thaliana]; contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 136 Score = 29.5 bits (63), Expect = 2.5 Identities = 15/40 (37%), Positives = 22/40 (55%) Frame = +1 Query: 229 IVDR*QWKRRGCGIVEFTNTEAMKKALFVMHRYELNGRKL 348 I DR + RG G V F+ ++ A+ M ELNGR++ Sbjct: 67 IADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQI 106 >At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative similar to Glycine-rich RNA-binding protein 2, mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8) [Arabidopsis thaliana]; contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 136 Score = 29.5 bits (63), Expect = 2.5 Identities = 15/40 (37%), Positives = 22/40 (55%) Frame = +1 Query: 229 IVDR*QWKRRGCGIVEFTNTEAMKKALFVMHRYELNGRKL 348 I DR + RG G V F+ ++ A+ M ELNGR++ Sbjct: 67 IADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQI 106 >At1g44446.3 68414.m05115 chlorophyll a oxygenase (CAO) / chlorophyll b synthase identical to chlorophyll a oxygenase GI:5853117 from [Arabidopsis thaliana]; contains Pfam PF00355 Rieske [2Fe-2S] domain Length = 433 Score = 29.5 bits (63), Expect = 2.5 Identities = 11/40 (27%), Positives = 19/40 (47%) Frame = -3 Query: 694 FNGWSYSMTANPLLLPSLSTAKSMLRTLPAILNTSLILAW 575 ++GW YS +PS K +++LP + +I W Sbjct: 283 YHGWEYSTDGECKKMPSTKLLKVKIKSLPCLEQEGMIWIW 322 >At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) / chlorophyll b synthase identical to chlorophyll a oxygenase GI:5853117 from [Arabidopsis thaliana]; contains Pfam PF00355 Rieske [2Fe-2S] domain Length = 511 Score = 29.5 bits (63), Expect = 2.5 Identities = 11/40 (27%), Positives = 19/40 (47%) Frame = -3 Query: 694 FNGWSYSMTANPLLLPSLSTAKSMLRTLPAILNTSLILAW 575 ++GW YS +PS K +++LP + +I W Sbjct: 283 YHGWEYSTDGECKKMPSTKLLKVKIKSLPCLEQEGMIWIW 322 >At1g44446.1 68414.m05113 chlorophyll a oxygenase (CAO) / chlorophyll b synthase identical to chlorophyll a oxygenase GI:5853117 from [Arabidopsis thaliana]; contains Pfam PF00355 Rieske [2Fe-2S] domain Length = 536 Score = 29.5 bits (63), Expect = 2.5 Identities = 11/40 (27%), Positives = 19/40 (47%) Frame = -3 Query: 694 FNGWSYSMTANPLLLPSLSTAKSMLRTLPAILNTSLILAW 575 ++GW YS +PS K +++LP + +I W Sbjct: 283 YHGWEYSTDGECKKMPSTKLLKVKIKSLPCLEQEGMIWIW 322 >At5g44200.1 68418.m05408 nuclear cap-binding protein, putative similar to SP|P52298 20 kDa nuclear cap binding protein (CBP20) (NCBP interacting protein 1) {Homo sapiens}; non-consensus AT donor splice site at exon 4, AC acceptor splice site at exon 5; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 257 Score = 29.1 bits (62), Expect = 3.3 Identities = 9/35 (25%), Positives = 23/35 (65%) Frame = +3 Query: 543 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKD 647 V++ N+ + + ++ E+F AG+++ I + +DK+ Sbjct: 36 VYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKN 70 >At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31 (RSP31) identical to SP|P92964 Arginine/serine-rich splicing factor RSP31 {Arabidopsis thaliana} Length = 264 Score = 29.1 bits (62), Expect = 3.3 Identities = 10/33 (30%), Positives = 21/33 (63%) Frame = +3 Query: 534 VKKVFVANLDYKADQAKIKEVFKMAGKVRNIDL 632 ++ VFV N +Y+ Q+ ++ +F G+V +D+ Sbjct: 1 MRPVFVGNFEYETRQSDLERLFDKYGRVDRVDM 33 >At3g50670.2 68416.m05543 U1 small nuclear ribonucleoprotein 70 (U1-70k) Length = 204 Score = 29.1 bits (62), Expect = 3.3 Identities = 10/30 (33%), Positives = 21/30 (70%) Frame = +3 Query: 537 KKVFVANLDYKADQAKIKEVFKMAGKVRNI 626 K +FV+ L+Y++ ++KIK F+ G ++ + Sbjct: 138 KTLFVSRLNYESSESKIKREFESYGPIKRV 167 >At3g11400.1 68416.m01390 eukaryotic translation initiation factor 3G / eIF3g nearly identical to eukaryotic translation initiation factor 3g [Arabidopsis thaliana] GI:12407751 Length = 294 Score = 29.1 bits (62), Expect = 3.3 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%) Frame = +3 Query: 543 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVD-KDGNSRGFAVIEY 680 V V NL + + E+F G V + +A+D K G SRGF + + Sbjct: 215 VRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNF 261 >At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 304 Score = 29.1 bits (62), Expect = 3.3 Identities = 13/59 (22%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Frame = +3 Query: 507 GSINVQPPLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKD-GNSRGFAVIEY 680 G+ N + K+FV L ++ + ++ F+ G++ + DK+ G S+G+ + + Sbjct: 12 GNNNTTDTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTF 70 >At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 protein GI:1279562 from [Medicago sativa] Length = 557 Score = 29.1 bits (62), Expect = 3.3 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 2/63 (3%) Frame = +1 Query: 256 RGCGIVEFTNTEAMKKALFVMHRYELNGR--KLVLKEETGNERRMHTSRPQHREGRNNRD 429 RG G VEF ++E +KAL H L GR +L + +E G PQ R+ D Sbjct: 338 RGFGHVEFASSEEAQKAL-EFHGRPLLGREIRLDIAQERGERGERPAFTPQSGNFRSGGD 396 Query: 430 DKD 438 D Sbjct: 397 GGD 399 >At5g51450.1 68418.m06378 zinc finger (C3HC4-type RING finger) family protein contains similarity to autocrine motility factor receptor [Mus musculus] GI:5931953; contains Pfam profiles PF00097: Zinc finger, C3HC4 type (RING finger), PF02845: CUE domain Length = 577 Score = 28.7 bits (61), Expect = 4.4 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = -2 Query: 113 LTTGLCWRLRTSMAYHRVSSGRVLFLSEDPC 21 L+T LCW + M Y+ V S L L +PC Sbjct: 169 LSTDLCWIKLSLMIYNTVGSSVYLLLLFEPC 199 >At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, putative similar to SP|P92964 Arginine/serine-rich splicing factor RSP31 {Arabidopsis thaliana} Length = 250 Score = 28.7 bits (61), Expect = 4.4 Identities = 9/33 (27%), Positives = 20/33 (60%) Frame = +3 Query: 534 VKKVFVANLDYKADQAKIKEVFKMAGKVRNIDL 632 ++ V+V N DY + ++ +F G+V+ +D+ Sbjct: 1 MRHVYVGNFDYDTRHSDLERLFSKFGRVKRVDM 33 >At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly identical to UBP1 interacting protein 1a [Arabidopsis thaliana] GI:19574236; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM); based on cDNA of partial mRNA for UBP1 interacting protein 1a (uba1a) GI:19574235 Length = 347 Score = 28.7 bits (61), Expect = 4.4 Identities = 12/49 (24%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Frame = +3 Query: 537 KKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEY 680 +K+FV L ++ + + VF+ G++ + +DK G ++GF + + Sbjct: 104 RKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMF 152 >At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly identical to UBP1 interacting protein 1a [Arabidopsis thaliana] GI:19574236; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM); based on cDNA of partial mRNA for UBP1 interacting protein 1a (uba1a) GI:19574235 Length = 343 Score = 28.7 bits (61), Expect = 4.4 Identities = 12/49 (24%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Frame = +3 Query: 537 KKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEY 680 +K+FV L ++ + + VF+ G++ + +DK G ++GF + + Sbjct: 104 RKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMF 152 >At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative similar to SP|Q04836 31 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) {Arabidopsis thaliana}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 329 Score = 28.3 bits (60), Expect = 5.8 Identities = 12/35 (34%), Positives = 21/35 (60%) Frame = +1 Query: 256 RGCGIVEFTNTEAMKKALFVMHRYELNGRKLVLKE 360 RG G V ++ + + A+ +RY+LNGR L + + Sbjct: 191 RGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNK 225 >At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong similarity to SP|O22315 Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis thaliana} Length = 300 Score = 28.3 bits (60), Expect = 5.8 Identities = 13/34 (38%), Positives = 22/34 (64%) Frame = +2 Query: 131 SRRLFVSNIPYEFRWTELKDLFKEKVGDVAYVEL 232 SR ++V N+P + R E++D+F K G + +EL Sbjct: 6 SRSIYVGNLPGDIREHEIEDIF-YKYGRIVDIEL 38 >At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing protein Length = 561 Score = 28.3 bits (60), Expect = 5.8 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 4/69 (5%) Frame = +1 Query: 163 RISLDGTERFVQRESWRCGLCR----IVDR*QWKRRGCGIVEFTNTEAMKKALFVMHRYE 330 +I+L TER V R G R I+DR + RG G VEF +T ++ A+ + Sbjct: 188 QIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAI-ALSGQP 246 Query: 331 LNGRKLVLK 357 L G+ +++K Sbjct: 247 LLGQPVMVK 255 >At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative similar to Glycine-rich RNA-binding protein from {Daucus carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 185 Score = 28.3 bits (60), Expect = 5.8 Identities = 14/50 (28%), Positives = 26/50 (52%) Frame = +1 Query: 229 IVDR*QWKRRGCGIVEFTNTEAMKKALFVMHRYELNGRKLVLKEETGNER 378 I+DR + +G V F + ++M+ A+ M+ EL+GR + + R Sbjct: 76 IIDRETGRSKGFRFVTFKDEDSMRTAIDRMNGQELDGRNITAQARGSGTR 125 >At5g62400.1 68418.m07831 hypothetical protein Length = 214 Score = 27.9 bits (59), Expect = 7.7 Identities = 12/27 (44%), Positives = 19/27 (70%) Frame = +2 Query: 170 RWTELKDLFKEKVGDVAYVELLTDDSG 250 R TEL++ FKEK G + ++L + +SG Sbjct: 75 RLTELEEAFKEKTGPINQLDLQSLESG 101 >At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing protein similar to RNA recognition motif-containing protein SEB-4 GI:8895698 from [Xenopus laevis]; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 271 Score = 27.9 bits (59), Expect = 7.7 Identities = 12/48 (25%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Frame = +3 Query: 540 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKD-GNSRGFAVIEY 680 KVFV L ++ +++ F+ G++ + DK+ G S+G+ + + Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTF 65 >At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing protein similar to RNA recognition motif-containing protein SEB-4 GI:8895698 from [Xenopus laevis]; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 287 Score = 27.9 bits (59), Expect = 7.7 Identities = 12/48 (25%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Frame = +3 Query: 540 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKD-GNSRGFAVIEY 680 KVFV L ++ +++ F+ G++ + DK+ G S+G+ + + Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTF 65 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,295,252 Number of Sequences: 28952 Number of extensions: 302281 Number of successful extensions: 1138 Number of sequences better than 10.0: 100 Number of HSP's better than 10.0 without gapping: 1038 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1138 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1682736544 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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