Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0605
         (774 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    27   0.17 
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    25   0.89 
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    23   2.1  

>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 27.1 bits (57), Expect = 0.17
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = +2

Query: 50  NSISRKTRSTIDPTLLGTSTPYVA--KSTRSG 139
           N+IS+ T ST+DP     S+P ++   ST+SG
Sbjct: 50  NAISQITNSTLDPGRKSPSSPRISSPSSTKSG 81


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -2

Query: 713 VNLSSTLEQPLIALTFNDFDFKPARLFLTVPNISYSLAFRYSA 585
           +NL   L+     L    F+  P++  + VPN  Y + FR+ A
Sbjct: 620 INLKHALDLDRRGLLHRQFNLPPSKDTIAVPNNGY-VIFRFRA 661


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -2

Query: 713 VNLSSTLEQPLIALTFNDFDFKPARLFLTVPNISY 609
           +NL   L+     L    F+  PA+  + VPN  Y
Sbjct: 620 INLKHALDLDRQGLLHRQFNLPPAKDTIAVPNNGY 654


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,586
Number of Sequences: 336
Number of extensions: 3006
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20857569
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)