Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0605
         (774 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g28770.1 68416.m03591 expressed protein                             29   3.4  
At3g01310.1 68416.m00042 expressed protein similar to unknown pr...    28   6.0  
At5g15070.1 68418.m01766 expressed protein                             28   7.9  

>At3g28770.1 68416.m03591 expressed protein 
          Length = 2081

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +2

Query: 38   GTPGNSISRKTRSTIDPTLLGTSTPYVAKSTRSGCSFISNRSRSNPG 178
            G+  NS++ +T  T D  ++ T+T   + +++   SFISN    +PG
Sbjct: 1855 GSNENSMNNQTTGTGDD-IISTTTDTESNTSKEVTSFISNLEEKSPG 1900


>At3g01310.1 68416.m00042 expressed protein similar to unknown
           protein GB:BAA24863 [Homo sapiens], unknown protein
           GB:BAA20831 [Homo sapiens], unknown protein GB:AAB42264
           [Caenorhabditis elegans]
          Length = 1056

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
 Frame = -1

Query: 165 RDRFDINEHPDLVDLATYGVLVPSNVG-SIVDLVF--LEMLLPGV-PNE 31
           +DRFDI + PD+ D   Y +L  S++    +D +F   ++L  GV PNE
Sbjct: 726 KDRFDITQIPDVYDSCKYDLLHNSHLDLKGLDELFKVAQLLADGVIPNE 774


>At5g15070.1 68418.m01766 expressed protein
          Length = 1049

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
 Frame = -1

Query: 165 RDRFDINEHPDLVDLATYGVLVPSNVG-SIVDLVF--LEMLLPGV-PNE 31
           R+RFDI + PD+ D   Y +L  S++    +D +F   ++L  GV PNE
Sbjct: 718 RERFDITQIPDVYDSCKYDLLHNSHLDLKGLDELFKVAQLLADGVIPNE 766


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,969,125
Number of Sequences: 28952
Number of extensions: 280812
Number of successful extensions: 721
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)