Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0604
(659 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g49540.1 68414.m05553 transducin family protein / WD-40 repea... 54 8e-08
At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless... 34 0.073
At3g53390.1 68416.m05892 transducin family protein / WD-40 repea... 34 0.096
At2g41500.1 68415.m05127 WD-40 repeat family protein / small nuc... 33 0.13
At2g26060.1 68415.m03129 transducin family protein / WD-40 repea... 33 0.13
At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha... 33 0.13
At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha... 33 0.13
At4g29830.1 68417.m04246 transducin family protein / WD-40 repea... 33 0.22
At2g37160.1 68415.m04559 transducin family protein / WD-40 repea... 32 0.29
At1g12980.1 68414.m01507 AP2 domain-containing transcription fac... 32 0.39
At2g22040.1 68415.m02617 transducin family protein / WD-40 repea... 31 0.68
At2g05720.1 68415.m00613 transducin family protein / WD-40 repea... 31 0.90
At1g32640.1 68414.m04026 basic helix-loop-helix (bHLH) protein (... 31 0.90
At3g18140.1 68416.m02306 transducin family protein / WD-40 repea... 30 1.2
At4g35050.1 68417.m04974 WD-40 repeat protein (MSI3) contains 5 ... 30 1.6
At4g24250.1 68417.m03480 seven transmembrane MLO family protein ... 29 2.1
At4g03020.1 68417.m00410 transducin family protein / WD-40 repea... 29 2.1
At3g49400.1 68416.m05400 transducin family protein / WD-40 repea... 29 2.1
At2g16780.1 68415.m01924 WD-40 repeat protein (MSI2) contains 5 ... 29 2.1
At5g43920.1 68418.m05372 transducin family protein / WD-40 repea... 29 2.7
At5g15550.2 68418.m01821 transducin family protein / WD-40 repea... 29 2.7
At5g15550.1 68418.m01820 transducin family protein / WD-40 repea... 29 2.7
At1g48720.1 68414.m05452 hypothetical protein 29 3.6
At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pf... 28 4.8
At1g36070.1 68414.m04484 WD-40 repeat family protein contains 2 ... 28 4.8
At1g15440.2 68414.m01856 transducin family protein / WD-40 repea... 28 4.8
At1g15440.1 68414.m01855 transducin family protein / WD-40 repea... 28 4.8
At5g57020.1 68418.m07117 myristoyl-CoA:protein N-myristoyltransf... 28 6.3
At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6 ... 28 6.3
At4g31340.1 68417.m04445 myosin heavy chain-related contains wea... 28 6.3
At3g09730.1 68416.m01152 expressed protein 28 6.3
At5g46830.1 68418.m05769 basic helix-loop-helix (bHLH) family pr... 27 8.4
At5g22200.1 68418.m02584 harpin-induced family protein / HIN1 fa... 27 8.4
At4g32990.1 68417.m04692 transducin family protein / WD-40 repea... 27 8.4
At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic regul... 27 8.4
At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pf... 27 8.4
At1g48600.2 68414.m05434 phosphoethanolamine N-methyltransferase... 27 8.4
At1g48600.1 68414.m05435 phosphoethanolamine N-methyltransferase... 27 8.4
>At1g49540.1 68414.m05553 transducin family protein / WD-40 repeat
family protein similar to signal transducer and
activator of transcription interacting protein 1
(GI:15929722) {Mus musculus}; similar to hypothetical
protein GB:AAD43147 GI:5430747 from (Arabidopsis
thaliana); contains Pfam PF00400: WD domain, G-beta
repeat (11 copies, 2 weak)
Length = 840
Score = 54.0 bits (124), Expect = 8e-08
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Frame = +3
Query: 306 VEEKVFHAYDNLWSVKLEAVLAGHEAWVYGVQWHPYSFDGPTKKPV----YRLLSSSLDK 473
+E VF + + + +E+VL GHE WVY V+W P D + V +LS+S+DK
Sbjct: 280 IEGPVFVSGTFTYQISVESVLIGHEDWVYSVEWQPPVIDFIDGRLVNHQPLSILSASMDK 339
Query: 474 TLIIWEPDSSS 506
T++IW P+ +
Sbjct: 340 TMMIWRPEKKT 350
Score = 33.5 bits (73), Expect = 0.13
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 584 FGPEGMSFLGHGYNGSFHIW 643
+ P +S L HGY G+FH+W
Sbjct: 374 WSPNSLSILAHGYGGAFHLW 393
Score = 32.7 bits (71), Expect = 0.22
Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 11/96 (11%)
Frame = +1
Query: 1 VTLKQSISLHSGLCLTLHAQILPCANKPLLLCALD--DHKIHIFVGE---DYHRAHTLVG 165
V SI + + +TL LP N AL D+KI ++ GE + L G
Sbjct: 163 VVCLDSICVDTKAIVTLSLAELP-QNPGRFALALGGLDNKIKLYSGERTGKFTSVCELKG 221
Query: 166 HEDWVRGLD------VLEVDNDTIIVASASQDTYIR 255
H DW+R LD E ++I++ S+SQD IR
Sbjct: 222 HTDWIRSLDFSLPLHTTEEIPNSIMLVSSSQDKVIR 257
>At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless
protein, putative similar to notchless [Xenopus laevis]
GI:3687833; contains Pfam PF00400: WD domain, G-beta
repeat (8 copies)
Length = 473
Score = 34.3 bits (75), Expect = 0.073
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 366 LAGHEAWVYGVQWHPYSFDGPTKKPVYRLLSSSLDKTLIIWE 491
L GH+ W+ G+ W P P + R ++SS D IW+
Sbjct: 190 LTGHKKWITGISWEPVHLSSPCR----RFVTSSKDGDARIWD 227
>At3g53390.1 68416.m05892 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to Dystrophia myotonica-containing WD repeat
motif protein DMR-N9 protein (DMWD) (DM9) (SP:Q08274)
[Mus musculus]; simlar to DMR protein GI:18028289 [Homo
sapiens];
Length = 558
Score = 33.9 bits (74), Expect = 0.096
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
Frame = +3
Query: 339 LWSVKLEAVLA---GHEAWVYGV----QWHPYSFDGPTKKPVYRLLSSSLDKTLIIWE 491
+WS++ V+A GH +WV GV W + DG + +YR S D L++W+
Sbjct: 371 VWSMEDRKVVAWGEGHNSWVSGVAFDSNWSSPNSDGSGEHVMYRFGSVGQDTQLLLWD 428
>At2g41500.1 68415.m05127 WD-40 repeat family protein / small
nuclear ribonucleoprotein Prp4p-related similar to U4/U6
small nuclear ribonucleoprotein hPrp4 (GP:2708305) {Homo
sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies)|19877698|gb|AU238529.1|AU238529
Length = 554
Score = 33.5 bits (73), Expect = 0.13
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = +1
Query: 88 LLCALDDHKIHIFVGEDYHRAHTLVGHEDWVRGLDVLEVDNDTIIVASASQDTYIR 255
L A D K++I+ G D+ +L GHE V LD+ D+ +A+ S D I+
Sbjct: 481 LATASYDMKVNIWSGRDFSLVKSLAGHESKVASLDITA---DSSCIATVSHDRTIK 533
>At2g26060.1 68415.m03129 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to WD40-repeat containing protein Ciao 1
(SP:O76071) [Homo sapiens]
Length = 352
Score = 33.5 bits (73), Expect = 0.13
Identities = 22/57 (38%), Positives = 29/57 (50%)
Frame = +3
Query: 336 NLWSVKLEAVLAGHEAWVYGVQWHPYSFDGPTKKPVYRLLSSSLDKTLIIWEPDSSS 506
NL V+++ L GH V+ V W+P S P+ L S S D T+ IWE S S
Sbjct: 7 NLELVEIQK-LEGHTDRVWSVAWNPVSSHADGVSPI--LASCSGDNTVRIWEQSSLS 60
>At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1218
Score = 33.5 bits (73), Expect = 0.13
Identities = 18/60 (30%), Positives = 34/60 (56%)
Frame = +1
Query: 76 NKPLLLCALDDHKIHIFVGEDYHRAHTLVGHEDWVRGLDVLEVDNDTIIVASASQDTYIR 255
++PL + DD+KI ++ + + TL+GH D++R ++ ++ + SAS D IR
Sbjct: 62 SQPLFVSGGDDYKIKVWNYKTHRCLFTLLGHLDYIR---TVQFHHENPWIVSASDDQTIR 118
>At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1216
Score = 33.5 bits (73), Expect = 0.13
Identities = 18/60 (30%), Positives = 35/60 (58%)
Frame = +1
Query: 76 NKPLLLCALDDHKIHIFVGEDYHRAHTLVGHEDWVRGLDVLEVDNDTIIVASASQDTYIR 255
++PL + DD+KI ++ +++ TL+GH D++R ++ ++ + SAS D IR
Sbjct: 62 SQPLFVSGGDDYKIKVWNYKNHRCLFTLLGHLDYIR---TVQFHHEYPWIVSASDDQTIR 118
>At4g29830.1 68417.m04246 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400); G
protein beta subunit-like protein, Schistosoma mansoni,
gb:U30261
Length = 321
Score = 32.7 bits (71), Expect = 0.22
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +3
Query: 354 LEAVLAGHEAWVYGVQWHPYSFDGPTKKPVYRLLSSSLDKTLIIWEPD 497
L+++ HE V+ W P + D P LL+ SLD+T+ +W PD
Sbjct: 6 LKSIENAHEDSVWAATWVPATEDRPAL-----LLTGSLDETVKLWRPD 48
>At2g37160.1 68415.m04559 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to Dystrophia myotonica-containing WD repeat
motif protein DMR-N9 protein (DMWD) (DM9) (SP:Q08274)
[Mus musculus]; simlar to DMR protein GI:18028289 [Homo
sapiens];
Length = 544
Score = 32.3 bits (70), Expect = 0.29
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
Frame = +3
Query: 339 LWSVKLEAVLA---GHEAWVYGV----QWHPYSFDGPTKKPVYRLLSSSLDKTLIIWE 491
+WS++ V+A GH +WV GV W + +G + +YR S D L++W+
Sbjct: 371 VWSMEDRKVVAWGEGHNSWVSGVAFDSYWSSPNSEGSGENVMYRFGSVGQDTQLLLWD 428
>At1g12980.1 68414.m01507 AP2 domain-containing transcription
factor, putative / enhancer of shoot regeneration (ESR1)
similar to gb|D38124 EREBP-3 from Nicotiana tabacum and
contains PF|00847 AP2 domain; identical to cDNA enhancer
of shoot regeneration ESR1 GI:18028939, enhancer of
shoot regeneration ESR1 [Arabidopsis thaliana]
GI:18028940
Length = 328
Score = 31.9 bits (69), Expect = 0.39
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = +3
Query: 417 FDGPTKKPVYRLLSSSLDKTLIIWEPDSSSTTKVSG*RRSGWAKWEAE 560
F PT PV R S T + SSTT+ G RR W ++ AE
Sbjct: 24 FTEPTASPVSRNRKLSSKDTTVTIAGAGSSTTRYRGVRRRPWGRYAAE 71
>At2g22040.1 68415.m02617 transducin family protein / WD-40 repeat
family protein similar to Pop3 (GI:3434986)
[Schizosaccharomyces pombe]; contains Pfam PF00400: WD
domain, G-beta repeat (6 copies, 2 weak);
Length = 312
Score = 31.1 bits (67), Expect = 0.68
Identities = 20/51 (39%), Positives = 26/51 (50%)
Frame = +3
Query: 336 NLWSVKLEAVLAGHEAWVYGVQWHPYSFDGPTKKPVYRLLSSSLDKTLIIW 488
NL KLE VL GHE WV+ +S DG L+++S D T +W
Sbjct: 245 NLDGFKLEKVLTGHERWVWDCD---FSMDGE------YLVTASSDTTARLW 286
Score = 28.3 bits (60), Expect = 4.8
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Frame = +1
Query: 52 HAQILPCANKP---LLLCALDDHKIHIFVGEDYHRAHTLVGHEDWVRGLDVLEVDNDTII 222
++ IL C P L A D + I+ + + L GHE WV D +D + ++
Sbjct: 217 NSHILKCLLSPGNKYLATASSDKTVKIWNLDGFKLEKVLTGHERWVWDCD-FSMDGEYLV 275
Query: 223 VASASQDTYIRCGRYKRSK 279
+AS DT R + K
Sbjct: 276 --TASSDTTARLWSMRAGK 292
>At2g05720.1 68415.m00613 transducin family protein / WD-40 repeat
family protein Similar to U4/U6 small nuclear
ribonucleoprotein hPrp4 (gi:2708305)[Homo sapiens];
contains 4 WD-40 repeats
Length = 276
Score = 30.7 bits (66), Expect = 0.90
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 88 LLCALDDHKIHIFVGEDYHRAHTLVGHEDWVRGLDV 195
L A D ++I+ G D+ +LVGHE V LD+
Sbjct: 230 LATASHDMNVNIWSGRDFSLVKSLVGHESKVASLDI 265
>At1g32640.1 68414.m04026 basic helix-loop-helix (bHLH) protein
(RAP-1) identical to bHLH protein GB:CAA67885 GI:1465368
from [Arabidopsis thaliana]
Length = 623
Score = 30.7 bits (66), Expect = 0.90
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = +3
Query: 351 KLEAVLAG-HEAWVYGVQWHP-YSFDG 425
+L+A++ G HE W Y + W P Y F G
Sbjct: 71 RLQALIEGTHEGWTYAIFWQPSYDFSG 97
>At3g18140.1 68416.m02306 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to Pop3 (GP:3434986) [Schizosaccharomyces pombe]
Length = 305
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +3
Query: 339 LWSV---KLEAVLAGHEAWVYGVQWHPYSFDGPTKKPVYRLLSSSLDKTLIIWEPDSSST 509
+W+V KLE VL GH+ WV+ +S DG L+++S D T +W +
Sbjct: 237 IWNVDGFKLEKVLTGHQRWVWDC---VFSVDGEF------LVTASSDMTARLWSMPAGKE 287
Query: 510 TKV 518
KV
Sbjct: 288 VKV 290
Score = 27.5 bits (58), Expect = 8.4
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +1
Query: 61 ILPCANKPLLLCALDDHKIHIFVGEDYHRAHTLVGHEDWVRGLDVLEVDNDTIIVASA 234
+L ANK L A D + I+ + + L GH+ WV V VD + ++ AS+
Sbjct: 218 LLSPANK-YLATASSDKTVKIWNVDGFKLEKVLTGHQRWVWDC-VFSVDGEFLVTASS 273
>At4g35050.1 68417.m04974 WD-40 repeat protein (MSI3) contains 5
WD-40 repeats (PF0400); identical to WD-40 repeat
protein MSI3 (SP:O22469) [Arabidopsis thaliana]
Length = 424
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +3
Query: 366 LAGHEAWVYGVQWHPYSFDGPTKKPVYRLLSSSLDKTLIIWEPDSSSTTKV 518
L GHE YG+ W + K Y LLS S D+ + +W+ +++T KV
Sbjct: 165 LMGHEQEGYGLAWSSF-------KEGY-LLSGSQDQRICLWDVSATATDKV 207
>At4g24250.1 68417.m03480 seven transmembrane MLO family protein /
MLO-like protein 13 (MLO13) identical to membrane
protein Mlo13 [Arabidopsis thaliana]
gi|14091596|gb|AAK53806; similar to MLO protein
SWISS-PROT:P93766, NCBI_gi:1877221 [Hordeum
vulgare][Barley]
Length = 478
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 353 FHRPKIVICMEHFFLNLNQFGLRLCFDLLY 264
FHRP IV+ + HF L N F + F +L+
Sbjct: 352 FHRPGIVLQLIHFILFQNSFEIAFFFWILF 381
>At4g03020.1 68417.m00410 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to L. erythrorhizon LEC14B, GenBank accession
number Q40153
Length = 493
Score = 29.5 bits (63), Expect = 2.1
Identities = 24/70 (34%), Positives = 32/70 (45%)
Frame = +3
Query: 324 HAYDNLWSVKLEAVLAGHEAWVYGVQWHPYSFDGPTKKPVYRLLSSSLDKTLIIWEPDSS 503
+ YD + K+ AVL H + V WHPY PT L+SSS D L+ WE S
Sbjct: 426 YIYDLVSGDKV-AVLKHHSSPVRDCNWHPYY---PT------LISSSWDGDLVKWEFPGS 475
Query: 504 STTKVSG*RR 533
+ +R
Sbjct: 476 GEAPIMSKKR 485
>At3g49400.1 68416.m05400 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400); low
similarity (47%) to Agamous-like MADS box protein AGL5
(SP:P29385) {Arabidopsis thaliana}
Length = 892
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 348 VKLEAVLAGHEAWVYGVQWHPYSFDGPTKKPVYRLLSSSLDKTLIIW 488
V+L A++ H +WV + W + D + P L++ S D ++ IW
Sbjct: 313 VELTAIVQTHSSWVSTMSWGIFGCD--SSNPQVVLVTGSCDGSVKIW 357
>At2g16780.1 68415.m01924 WD-40 repeat protein (MSI2) contains 5
WD-40 repeats (PF0400); identical to WD-40 repeat
protein MSI2 (SP:O22468) [Arabidopsis thaliana] WD-40
repeats (PF0400);
Length = 415
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +3
Query: 366 LAGHEAWVYGVQWHPYSFDGPTKKPVYRLLSSSLDKTLIIWEPDSSSTTKV 518
L GH+ YG+ W P+ K Y LLS S D+ + +W+ ++ KV
Sbjct: 164 LVGHDKEGYGLSWSPF-------KEGY-LLSGSQDQKICLWDVSATPQDKV 206
>At5g43920.1 68418.m05372 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 523
Score = 29.1 bits (62), Expect = 2.7
Identities = 21/53 (39%), Positives = 27/53 (50%)
Frame = +3
Query: 336 NLWSVKLEAVLAGHEAWVYGVQWHPYSFDGPTKKPVYRLLSSSLDKTLIIWEP 494
NL + K VL+GH V V W+P K P L S+S D+T+ IW P
Sbjct: 471 NLKNTKPLEVLSGHSMTVNCVSWNP-------KNP-RMLASASDDQTIRIWGP 515
>At5g15550.2 68418.m01821 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 402
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = +3
Query: 369 AGHEAWVYGVQWHPYSFDGPTKKPVYRLLSSSLDKTLIIWEPDSSSTTK 515
+ H +W+ +WH S+ + LLS+S D +++W+ ++ TK
Sbjct: 355 SSHSSWISACKWHKSSW--------FHLLSASYDGKIMLWDLRTAVMTK 395
>At5g15550.1 68418.m01820 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 433
Score = 29.1 bits (62), Expect = 2.7
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Frame = +3
Query: 369 AGHEAWVYGVQWHPYSFDGPTKKPVYRLLSSSLDKTLIIWE-----PDSSSTTKVSG*RR 533
+ H +W+ +WH S+ + LLS+S D +++W+ P S T
Sbjct: 355 SSHSSWISACKWHKSSW--------FHLLSASYDGKIMLWDLRTAWPLSVIDTHNDKVLS 406
Query: 534 SGWAKWEAEAWVSTGA 581
+ W W+ E+ VS GA
Sbjct: 407 ADW--WKGESVVSGGA 420
>At1g48720.1 68414.m05452 hypothetical protein
Length = 97
Score = 28.7 bits (61), Expect = 3.6
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +3
Query: 330 YDNLWSVKLEAVLAGHEAW 386
YDN WS++++A+L H+ W
Sbjct: 18 YDN-WSLRMKAILGAHDVW 35
>At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 825
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +3
Query: 450 LLSSSLDKTLIIWEPDSSSTTKV 518
LLSSS+DKT+ +W+ S + KV
Sbjct: 482 LLSSSMDKTVRLWDLSSKTCLKV 504
>At1g36070.1 68414.m04484 WD-40 repeat family protein contains 2
WD-40 repeats (PF0400);similar to guanine
nucleotide-binding protein beta subunit GPBA (SP:P36408)
[Dictyostelium discoideum (Slime mold)]; similar to
katanin p80 (WD40-containing) subunit B 1 (GI:12655011)
[Homo sapiens]
Length = 418
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +3
Query: 258 WKIQKVKAQPESKLIKVE-EKVFHAYDNLWSVKLEAVLAGHEAWVYGVQWHP 410
W + P+ KL+ V + + S K+ + L GH+ + + WHP
Sbjct: 249 WSVNNTSVSPDGKLLAVVGDSTECLISDSHSGKVISSLRGHKDYSFASAWHP 300
>At1g15440.2 68414.m01856 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 860
Score = 28.3 bits (60), Expect = 4.8
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Frame = +3
Query: 339 LWSVK---LEAVLAGHEAWVYGVQWHPYSFDGPTKKPVYRLLSSSLDKTLIIWEPDSSST 509
+WS K ++ +L+GHEA V+G+ + P + L SSS D T+ +W+ +S
Sbjct: 461 VWSKKTGQIKDILSGHEAPVHGLMFSPLT---------QLLASSSWDYTVRLWDVFASKG 511
Query: 510 T 512
T
Sbjct: 512 T 512
>At1g15440.1 68414.m01855 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 900
Score = 28.3 bits (60), Expect = 4.8
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Frame = +3
Query: 339 LWSVK---LEAVLAGHEAWVYGVQWHPYSFDGPTKKPVYRLLSSSLDKTLIIWEPDSSST 509
+WS K ++ +L+GHEA V+G+ + P + L SSS D T+ +W+ +S
Sbjct: 501 VWSKKTGQIKDILSGHEAPVHGLMFSPLT---------QLLASSSWDYTVRLWDVFASKG 551
Query: 510 T 512
T
Sbjct: 552 T 552
>At5g57020.1 68418.m07117 myristoyl-CoA:protein
N-myristoyltransferase 1 (NMT1) identical to
N-myristoyltransferase 1 (NMT1) [Arabidopsis thaliana]
GI:7339834
Length = 434
Score = 27.9 bits (59), Expect = 6.3
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -1
Query: 431 SRTIKTIRMPLYPIDPGFMTGKHCLKFHRPKIVICMEHFFLN-LNQFGLRLCFD 273
SRTIK ++P PI PGF + P+ V + N L+QFG+ FD
Sbjct: 257 SRTIKLYKLPDAPITPGF-------RKMEPRDVPAVTRLLRNYLSQFGVATDFD 303
>At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); rab11 binding protein, Bos
taurus, EMBL:AF117897
Length = 905
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = +3
Query: 450 LLSSSLDKTLIIWEPDSSSTTKV 518
LLSSS+DKT+ +W+ ++ S K+
Sbjct: 533 LLSSSMDKTVRLWDIETQSCLKL 555
>At4g31340.1 68417.m04445 myosin heavy chain-related contains weak
similarity to Myosin heavy chain, nonmuscle type A
(Cellular myosin heavy chain, type A) (Nonmuscle myosin
heavy chain-A) (NMMHC-A) (Swiss-Prot:P35579) [Homo
sapiens]
Length = 437
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +3
Query: 252 SLWKIQKVKAQPESKLIKVEEKVFHAYDNLWSVKLEAVLAGHEAWVYGVQWHP 410
SL K+QK + ++K+ K+E + A + + KLEA E W P
Sbjct: 155 SLDKLQKTNEEQKNKIGKLERAIKIAEEEMLRTKLEATTKAKELLEAHGSWLP 207
>At3g09730.1 68416.m01152 expressed protein
Length = 405
Score = 27.9 bits (59), Expect = 6.3
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 12/74 (16%)
Frame = +3
Query: 339 LWSVKLEAVLAGHEAWVYGVQWHPYSFDGPT-------KKPV-----YRLLSSSLDKTLI 482
+W V L A +AG +V ++P+S D PT ++PV L S DKT
Sbjct: 1 MWQVILGAAIAGSTGFVAKRLFNPFSRDSPTPENYAEEQEPVTPPVSIGFLDSPCDKTNG 60
Query: 483 IWEPDSSSTTKVSG 524
++ SS +T SG
Sbjct: 61 VFRFSSSGSTVNSG 74
>At5g46830.1 68418.m05769 basic helix-loop-helix (bHLH) family
protein
Length = 511
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +3
Query: 351 KLEAVLAG-HEAWVYGVQWHPYSFD 422
+L AVL G HE W Y + W P S+D
Sbjct: 37 RLHAVLNGTHEPWSYAIFWKP-SYD 60
>At5g22200.1 68418.m02584 harpin-induced family protein / HIN1
family protein / harpin-responsive family protein
similar to harpin-induced protein hin1 ( GI:1619321)
[Nicotiana tabacum]
Length = 210
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 537 GWAKWEAEAWVSTGAVLDQKVCPSWDMVTMALFTFGLLIR 656
GW +W+ +WVS G+ CP++ VT L G I+
Sbjct: 161 GWVRWKVGSWVS-GSYRLHVNCPAFITVTGKLTGTGPAIK 199
>At4g32990.1 68417.m04692 transducin family protein / WD-40 repeat
family protein HIRA protein, Drosophila melanogaster,
PID:e1250847
Length = 318
Score = 27.5 bits (58), Expect = 8.4
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = +3
Query: 366 LAGHEAWVYGVQWHPYSFDGPTKKPVYRLLSSSLDKTLIIWEPDS 500
L GH V+ V W+P + DG + S S DKT+ IWE S
Sbjct: 16 LEGHTDRVWNVAWNPAA-DGV-------IASCSADKTVRIWEQSS 52
>At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic
regulator 1 (PRL1) identical to PP1/PP2A phosphatases
pleiotropic regulator PRL1 (SP:Q42384) [Arabidopsis
thaliana], PRL1 [Arabidopsis thaliana] GI:577733;
contains Pfam PF00400: WD domain, G-beta repeat (7
copies)
Length = 486
Score = 27.5 bits (58), Expect = 8.4
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +1
Query: 154 TLVGHEDWVRGLDVLEVDNDTIIVASASQDTYIRCGRYKRSKHNRS 291
TL GH + VRG L V N + SA D ++C +++K RS
Sbjct: 213 TLTGHIEQVRG---LAVSNRHTYMFSAGDDKQVKCWDLEQNKVIRS 255
>At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 883
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 450 LLSSSLDKTLIIWEPDSSSTTKV 518
LLSSS+DKT+ +W S + KV
Sbjct: 527 LLSSSMDKTVRLWNLSSQTCLKV 549
>At1g48600.2 68414.m05434 phosphoethanolamine N-methyltransferase 2,
putative (NMT2) very similar to |PEM2_ARATH Putative
phosphoethanolamine N-methyltransferase 2 (EC 2.1.1.103)
(SP:Q944H0){Arabidopsis thaliana}; very similar to
Halotolerance protein Hal3b (SP:P94063)[Arabidopsis
thaliana]; to similar to GB:AAF61950 from [Spinacia
oleracea]
Length = 491
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = +3
Query: 261 KIQKVKAQPESKLIKVEEKVFHAYDNLWSVKLEAVLAGHEAW 386
+++KV+ + E + E+ ++ WS KLE +G + W
Sbjct: 442 ELEKVEKEKEEFISDFSEEDYNDIVGGWSAKLERTASGEQKW 483
>At1g48600.1 68414.m05435 phosphoethanolamine N-methyltransferase 2,
putative (NMT2) very similar to |PEM2_ARATH Putative
phosphoethanolamine N-methyltransferase 2 (EC 2.1.1.103)
(SP:Q944H0){Arabidopsis thaliana}; very similar to
Halotolerance protein Hal3b (SP:P94063)[Arabidopsis
thaliana]; to similar to GB:AAF61950 from [Spinacia
oleracea]
Length = 475
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = +3
Query: 261 KIQKVKAQPESKLIKVEEKVFHAYDNLWSVKLEAVLAGHEAW 386
+++KV+ + E + E+ ++ WS KLE +G + W
Sbjct: 426 ELEKVEKEKEEFISDFSEEDYNDIVGGWSAKLERTASGEQKW 467
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,188,341
Number of Sequences: 28952
Number of extensions: 321927
Number of successful extensions: 1150
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1143
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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