Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0603
         (779 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    28   0.096
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    28   0.096
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      24   1.6  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    23   2.7  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    22   4.8  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    22   6.3  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   8.4  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 27.9 bits (59), Expect = 0.096
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +3

Query: 384 HHEDEHVGRHRCYGQPHSSYCHR*RDRHRMRPSQS*QNQ 500
           HH+  H  +H  YG    +  H+    H+  P Q   NQ
Sbjct: 178 HHQPHHQQQHMMYGGQQGANMHQQGPPHQQPPIQQQPNQ 216


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 27.9 bits (59), Expect = 0.096
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +3

Query: 384 HHEDEHVGRHRCYGQPHSSYCHR*RDRHRMRPSQS*QNQ 500
           HH+  H  +H  YG    +  H+    H+  P Q   NQ
Sbjct: 180 HHQPHHQQQHMMYGGQQGANMHQQGPPHQQPPIQQQPNQ 218


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 663 SVFGLLVPVAAEAGYGWL 716
           S +G+L  +A EAG+ W+
Sbjct: 68  SKYGMLARLAVEAGFDWV 85


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 169 VRQKITIFDRCS*LGRIFAFMIWIICIYYY 80
           +R    + D C  + RIF F+I I C+  +
Sbjct: 517 IRSHDKLCDVCDSVNRIFGFIIIIGCLIQF 546


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 423 HSNDGDRHVRPHDVSVCHSE 364
           HSND + H + H  ++ H E
Sbjct: 307 HSNDLNMHQQHHQQNMSHEE 326


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -1

Query: 692 GDRH*QTEHRVYQHTHSEEQAS 627
           G    Q+ HR+Y H  S  + S
Sbjct: 91  GHEEAQSPHRIYMHPESPSKGS 112


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +3

Query: 309 LGQTKRAWNSALGY 350
           LG+T   WN   GY
Sbjct: 622 LGETIETWNKLFGY 635


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,865
Number of Sequences: 336
Number of extensions: 3961
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21065107
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)