Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0602
         (716 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17662| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_55028| Best HMM Match : Dynamitin (HMM E-Value=0.66)                28   6.6  

>SB_17662| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = +2

Query: 320 QCPLYV--RQAYLSASWDKNIKLVHLDKSAKCRINFNYTNKKTFTQKKSANS 469
           +C +++  R  Y+SASWDK +++ +  K+++ R     + K    Q + ANS
Sbjct: 140 RCVMHIPERSQYISASWDKTVRIWNAFKNSRKR-----STKDNKEQSEDANS 186


>SB_55028| Best HMM Match : Dynamitin (HMM E-Value=0.66)
          Length = 1709

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +1

Query: 133 HIIISKLFQVKNNLTVAFDFCLTITII 213
           H+++SKL QV N+LT   D  +TI+ I
Sbjct: 686 HLLVSKLSQVINSLTAIADGAVTISRI 712


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,744,947
Number of Sequences: 59808
Number of extensions: 331343
Number of successful extensions: 636
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)